genome.fa.s26.2.7.7.80.10.50.1000.118.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Length:  60343961

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  118  of  204  ( 24404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36714514--36714603	3	29.0	3	74	8	65	62	2	4	31	1.27
36714564--36714626	18	3.4	19	78	10	67	58	0	4	36	1.19
36715345--36715376	11	2.8	12	90	9	57	78	6	15	0	0.95
36720599--36720624	10	2.6	10	100	0	52	19	0	23	57	1.40
36722606--36722682	33	2.4	32	81	12	86	49	19	5	25	1.69
36722668--36722709	14	3.0	14	83	13	52	35	19	7	38	1.79
36722673--36722716	14	3.2	14	83	3	54	38	15	9	36	1.80
36728513--36728538	7	3.7	7	100	0	52	84	15	0	0	0.62
36739700--36739739	19	2.2	18	86	13	55	42	10	2	45	1.51
36743951--36744031	42	1.9	42	92	0	135	48	14	6	30	1.69
36744062--36744101	19	2.2	18	90	4	62	40	17	2	40	1.63
36745225--36745266	15	2.8	16	78	10	52	11	4	0	83	0.79
36746004--36746045	21	2.0	21	81	9	50	30	7	0	61	1.22
36746035--36746087	6	8.8	6	93	0	61	50	0	0	49	1.00
36746038--36746072	3	11.7	3	87	0	52	60	0	0	40	0.97
36746071--36746109	3	13.0	3	84	10	53	30	5	0	64	1.15
36746074--36746114	21	2.0	21	95	0	73	31	4	0	63	1.15
36746804--36746853	1	50.0	1	79	0	55	90	4	4	2	0.62
36746805--36746853	11	4.5	11	87	10	64	89	4	4	2	0.63
36748191--36748941	44	17.1	43	64	19	196	25	23	26	25	2.00
36748999--36749137	44	3.2	44	67	11	113	27	28	20	23	1.99
36748106--36749138	88	11.8	88	93	0	1645	25	24	25	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36750947--36751023	3	25.7	3	78	10	77	29	5	0	64	1.15
36750938--36751023	30	2.9	30	87	0	109	27	5	1	65	1.23
36751380--36751429	18	2.7	19	87	6	84	36	8	0	56	1.29
36751481--36751507	4	6.8	4	100	0	54	51	22	0	25	1.48
36769483--36769514	14	2.3	14	100	0	64	6	15	46	31	1.71
36774597--36774628	14	2.3	14	100	0	64	6	15	46	31	1.71
36790313--36790358	21	2.2	21	84	0	56	26	21	34	17	1.95
36790331--36790370	21	1.9	21	84	0	53	25	25	35	15	1.94
36794090--36794150	23	2.6	23	73	2	68	57	8	13	21	1.62
36794144--36794190	17	2.9	16	84	6	58	63	10	8	17	1.49
36798141--36798166	13	2.0	13	100	0	52	53	0	0	46	1.00
36809351--36809398	16	3.1	16	85	8	55	54	0	0	45	0.99
36815999--36816027	2	14.5	2	100	0	58	0	0	48	51	1.00
36817063--36817138	27	2.8	27	84	4	82	31	15	32	19	1.94
36819518--36819546	13	2.1	14	93	6	51	68	13	6	10	1.37
36830178--36830215	20	2.0	20	90	10	62	26	0	5	68	1.11
36830175--36830213	15	2.6	16	84	8	55	28	0	2	69	1.02
36830705--36830763	28	2.1	27	87	3	82	27	3	3	66	1.24
36831069--36831103	13	2.6	13	90	4	52	17	2	5	74	1.14
36842931--36843626	44	15.8	44	62	21	154	29	19	25	24	1.99
36842893--36843700	132	6.2	132	91	1	1227	29	20	25	24	1.99
36842893--36843700	265	3.1	264	91	1	1281	29	20	25	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36842893--36843700	397	2.1	390	91	2	1303	29	20	25	24	1.99
36845582--36845618	13	2.7	14	88	12	51	16	2	5	75	1.10
36848636--36849580	105	9.1	105	84	1	1103	23	16	22	38	1.93
36849834--36849868	3	11.7	3	100	0	70	68	0	0	31	0.90
36857789--36857831	21	1.9	24	86	13	65	30	4	11	53	1.57
36862414--36862479	23	2.9	23	93	0	105	22	16	28	31	1.96
36862690--36862737	23	2.0	25	84	8	64	39	0	22	37	1.55
36869062--36869184	42	3.0	41	83	5	140	16	25	16	42	1.88
36869110--36869178	21	3.3	21	72	8	68	17	24	15	42	1.88
36872508--36872628	44	2.8	44	83	7	131	21	19	14	44	1.86
36875327--36875413	27	3.2	27	78	0	102	37	16	25	20	1.93
36877724--36877782	31	1.9	31	89	0	91	37	23	16	22	1.94
36887819--36887853	18	1.9	18	88	0	52	37	5	20	37	1.76
36890534--36890579	21	2.2	21	96	0	83	26	8	26	39	1.85
36892867--36893079	89	2.4	90	79	7	227	44	13	15	26	1.84
36892873--36893079	45	4.6	44	78	3	182	42	13	16	27	1.85
36900193--36900227	4	8.8	4	93	0	61	25	0	22	51	1.48
36900355--36900405	26	1.9	26	84	11	68	27	7	11	52	1.65
36901937--36901976	20	2.0	20	95	0	71	25	22	2	50	1.62
36909396--36909485	10	9.4	10	76	14	52	58	1	4	35	1.25
36909396--36909477	20	4.2	18	75	18	67	58	1	4	35	1.27
36909396--36909479	21	4.2	21	75	11	72	58	1	4	35	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36909405--36909486	9	8.7	9	75	16	60	59	1	4	34	1.26
36909734--36909789	11	5.5	11	82	8	66	26	0	0	73	0.84
36909736--36909805	9	7.2	9	76	13	68	30	0	1	68	0.98
36909734--36909798	31	2.2	29	88	5	94	26	0	1	72	0.94
36909771--36909817	19	2.6	18	77	12	51	29	2	2	65	1.15
36909733--36909818	40	2.2	40	82	4	111	27	1	1	69	1.03
36910670--36910722	6	8.8	6	85	0	61	64	0	1	33	1.05
36917260--36917294	18	1.9	18	94	0	61	17	11	37	34	1.85
36924314--36924349	19	1.9	19	94	5	65	22	8	0	69	1.15
36925103--36925225	55	2.2	55	80	8	135	16	40	17	25	1.90
36929305--36929342	20	1.9	20	88	0	58	13	2	39	44	1.57
36929638--36929709	31	2.3	31	87	0	108	33	20	4	41	1.72
36941812--36941855	17	2.5	17	85	3	61	13	4	2	79	0.98
36945478--36945520	22	2.0	22	95	0	77	9	16	27	46	1.77
36945548--36945799	43	5.9	43	75	10	187	29	31	18	20	1.97
36945550--36945799	86	2.9	86	79	10	237	29	31	18	20	1.97
36945684--36945861	43	4.1	43	73	5	128	24	32	17	26	1.97
36945616--36945834	86	2.5	85	79	8	221	26	30	16	25	1.97
36946185--36946255	21	3.4	21	86	0	97	7	45	15	32	1.73
36946226--36946370	65	2.2	66	89	6	215	13	29	17	40	1.87
36946226--36946395	66	2.6	65	86	4	218	14	28	17	40	1.88
36947982--36948272	145	2.0	145	100	0	582	43	13	9	34	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36949403--36950070	9	78.2	9	65	23	190	33	1	19	45	1.60
36949418--36949479	25	2.5	25	86	5	81	35	1	20	41	1.62
36949450--36949544	16	5.8	16	74	9	77	30	3	20	46	1.66
36949403--36949540	66	2.1	68	88	2	208	32	2	21	43	1.67
36949468--36949541	25	3.0	25	83	0	103	29	4	21	44	1.71
36949536--36949612	32	2.3	34	80	17	97	41	0	15	42	1.47
36949561--36949603	12	4.0	11	77	17	54	41	0	11	46	1.40
36949588--36949612	13	1.9	13	100	0	50	36	0	16	48	1.46
36949571--36949957	50	7.5	50	67	20	185	32	1	19	46	1.58
36949663--36949705	16	2.7	16	85	0	59	30	2	20	46	1.63
36949682--36950007	25	13.2	25	70	14	135	31	1	20	46	1.61
36949742--36949786	23	1.9	24	90	4	74	40	0	17	42	1.50
36949747--36949823	32	2.3	35	78	19	99	40	0	15	44	1.47
36949772--36949814	12	4.0	11	77	17	54	41	0	11	46	1.40
36949442--36949938	211	2.4	211	94	1	854	33	1	19	45	1.60
36949799--36949823	13	1.9	13	100	0	50	36	0	16	48	1.46
36949782--36949825	22	2.0	21	91	4	70	36	0	15	47	1.46
36949874--36949939	16	4.6	16	70	24	56	28	0	25	45	1.54
36949897--36949978	16	5.0	16	77	5	83	29	1	20	48	1.57
36949679--36950007	50	6.7	49	70	16	189	31	1	20	46	1.61
36949987--36950031	23	1.9	24	90	4	74	40	0	17	42	1.50
36950000--36950193	32	6.2	32	70	21	126	36	0	15	47	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36950027--36950165	21	6.0	21	66	22	66	34	0	15	48	1.51
36950027--36950215	49	3.9	49	78	12	208	34	0	15	49	1.49
36949997--36950219	96	2.3	97	87	6	321	35	0	15	48	1.49
36950060--36950145	36	2.3	37	86	9	113	36	0	13	50	1.43
36949989--36950163	12	15.1	11	70	20	83	36	0	15	47	1.50
36950225--36950269	19	2.3	19	85	11	56	53	2	0	44	1.13
36950236--36950288	21	2.5	22	78	9	65	54	1	1	41	1.22
36952912--36952978	20	3.2	21	75	14	59	49	0	7	43	1.31
36953657--36953719	8	8.1	8	74	13	60	33	46	0	20	1.51
36953656--36953702	17	3.0	17	88	11	66	36	42	0	21	1.53

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204