genome.fa.s26.2.7.7.80.10.50.1000.129.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Length:  60343961

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  129  of  204  ( 24404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39866816--39866854	16	2.4	16	91	0	69	46	10	15	28	1.78
39877744--39877811	3	22.7	3	78	0	73	58	4	4	32	1.37
39879325--39879391	8	8.1	8	72	6	53	46	1	5	46	1.36
39879334--39879391	17	3.5	17	80	4	82	44	1	5	48	1.35
39879349--39879409	16	3.8	16	76	4	68	47	6	4	40	1.51
39879334--39879408	33	2.3	33	95	0	132	45	5	5	44	1.49
39880829--39880879	15	3.4	15	68	10	50	49	7	19	23	1.74
39880825--39880904	30	2.7	30	92	0	124	47	6	21	25	1.73
39885497--39885572	15	5.1	15	68	10	57	46	6	21	26	1.75
39885493--39885572	30	2.7	30	92	0	124	47	6	21	25	1.73
39888620--39888659	20	2.0	20	90	9	64	25	7	2	65	1.32
39897380--39897415	11	3.3	11	88	0	54	77	0	0	22	0.76
39900479--39900521	22	1.9	22	85	4	59	58	6	6	27	1.50
39902287--39902398	16	7.0	16	70	20	83	31	14	18	35	1.91
39902291--39902398	28	3.4	34	76	18	140	32	13	17	36	1.89
39903789--39904096	88	3.6	87	80	11	407	37	16	5	40	1.71
39903754--39904008	83	3.0	83	76	14	320	37	16	8	38	1.78
39903754--39904096	171	2.0	171	98	0	668	37	16	6	39	1.75
39903960--39904124	47	3.6	47	79	9	216	36	15	3	44	1.64
39904161--39904269	49	2.2	49	85	6	150	46	15	0	37	1.46
39904211--39904316	17	6.4	17	70	20	82	46	12	0	41	1.41
39904210--39904316	9	11.9	9	69	20	64	45	13	0	41	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39912174--39912281	43	2.5	43	81	0	126	33	26	13	25	1.94
39915985--39916156	91	1.8	95	87	6	262	29	11	8	50	1.69
39916562--39916622	29	2.1	30	87	3	88	21	16	19	42	1.89
39917624--39917657	14	2.4	14	90	0	50	32	41	0	26	1.56
39917634--39917675	15	2.9	15	85	3	50	35	45	0	19	1.50
39917655--39917704	24	2.0	26	88	7	77	42	34	0	24	1.55
39917698--39917739	14	2.9	14	82	6	57	35	35	0	28	1.58
39917694--39917740	15	3.3	15	82	8	62	40	31	0	27	1.57
39917890--39917945	22	2.5	23	82	8	71	33	41	0	25	1.56
39918251--39918416	73	2.3	72	91	3	269	28	26	19	25	1.99
39918321--39918530	114	1.8	114	86	2	305	25	25	21	27	2.00
39918256--39918722	187	2.5	188	86	3	643	26	25	21	25	2.00
39918430--39918585	73	2.1	74	88	4	237	21	22	25	30	1.99
39918503--39918834	115	2.9	114	87	4	461	26	26	21	25	2.00
39921701--39921974	40	6.9	40	83	0	325	35	18	26	19	1.95
39921864--39921954	20	4.6	19	68	8	56	38	18	26	16	1.92
39922525--39922620	24	4.0	24	75	2	86	38	6	38	16	1.74
39925073--39925111	20	2.0	20	84	0	51	12	7	2	76	1.09
39927426--39927474	16	3.1	16	81	0	53	38	18	24	18	1.93
39929575--39929620	22	2.1	22	100	0	92	45	19	8	26	1.79
39932274--39932691	209	2.0	209	94	0	730	29	17	23	28	1.97
39948856--39948900	21	2.1	21	87	0	63	33	20	15	31	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39949007--39949141	71	1.9	71	90	0	216	31	28	14	25	1.94
39957786--39957838	9	6.2	9	86	8	67	81	9	7	1	0.96
39957785--39957832	15	3.0	15	85	11	60	81	10	8	0	0.88
39957788--39957838	24	2.1	23	89	7	75	80	9	7	1	0.98
39957842--39957880	21	1.9	20	89	5	60	79	0	15	5	0.90
39957842--39957884	16	2.6	16	82	10	52	79	0	16	4	0.90
39959981--39960339	100	3.6	99	87	3	495	32	23	20	23	1.98
39960013--39960290	50	5.5	50	75	6	267	34	23	19	22	1.97
39959981--39960339	50	7.1	50	73	5	240	32	23	20	23	1.98
39960265--39960414	74	2.0	75	92	1	248	34	22	20	23	1.97
39960357--39960663	50	6.1	51	73	6	254	34	22	18	24	1.96
39960165--39960514	174	2.0	175	87	3	501	33	22	20	24	1.97
39960064--39960613	274	2.0	276	87	1	791	33	22	19	23	1.97
39960340--39960663	100	3.2	100	85	0	461	34	22	17	24	1.96
39960639--39960688	25	2.0	25	88	0	73	34	20	20	26	1.96
39960664--39960841	50	3.6	49	74	4	160	33	19	20	26	1.96
39960541--39960788	125	2.0	125	87	1	363	35	22	17	25	1.95
39960664--39960844	100	1.8	100	89	2	283	33	19	19	27	1.97
39960664--39960871	100	2.1	100	84	5	269	33	20	19	26	1.96
39970763--39970993	27	8.6	27	74	4	180	38	18	19	23	1.93
39970790--39970931	53	2.6	54	79	5	155	40	16	20	23	1.91
39970763--39970993	54	4.3	54	75	2	214	38	18	19	23	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39970900--39971013	54	2.1	53	80	4	131	35	20	21	21	1.96
39971032--39971128	24	4.0	24	82	2	106	22	6	23	47	1.74
39971063--39971136	24	3.1	24	86	0	103	20	8	22	48	1.75
39971312--39971450	32	4.4	32	85	0	172	20	20	18	40	1.92
39975912--39975960	22	2.1	24	82	14	59	55	30	0	14	1.40
39977148--39977193	21	2.3	20	78	14	51	45	17	6	30	1.73
39981489--39981550	30	2.1	30	84	6	81	50	11	8	30	1.67
39990906--39990931	11	2.4	11	100	0	52	7	7	7	76	1.15
39995467--39995493	14	1.9	14	100	0	54	14	25	22	37	1.93
39996720--39996760	16	2.6	16	84	11	57	53	0	0	46	1.00
39996720--39996770	15	3.5	15	84	10	61	52	0	0	47	1.00
39996877--39996922	18	2.5	19	76	20	53	41	4	4	50	1.42
39996718--39997039	119	2.8	115	88	3	457	46	4	3	45	1.40
39996937--39997138	91	2.2	92	84	5	282	48	4	3	43	1.41
39998589--39998615	11	2.5	11	100	0	54	51	18	7	22	1.70
40000025--40000179	67	2.3	68	95	2	276	52	12	7	27	1.65
40000272--40000337	33	2.0	33	90	0	105	37	7	15	39	1.75
40001222--40001287	25	2.6	26	95	4	118	22	19	10	46	1.80
40003108--40003157	25	2.0	25	100	0	100	28	12	40	20	1.87
40003220--40003321	38	2.9	33	82	13	141	54	12	28	3	1.55
40003220--40003321	33	2.9	36	84	11	147	54	12	28	3	1.55
40007502--40007566	28	2.3	28	83	0	76	27	15	18	38	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40007527--40007615	28	3.2	28	80	6	99	26	20	15	37	1.93
40009430--40009492	12	5.4	12	71	19	53	50	1	6	41	1.37
40009450--40009503	26	2.1	26	82	6	65	46	3	9	40	1.54
40009674--40009718	23	1.9	24	86	4	65	37	6	17	37	1.76
40011631--40011715	44	1.9	44	85	4	118	27	22	18	31	1.97
40011820--40012155	100	3.4	100	86	0	465	27	19	22	31	1.97
40011802--40012155	50	7.1	50	75	1	278	27	18	22	31	1.97
40012229--40012285	24	2.4	24	90	0	87	31	24	12	31	1.92
40018215--40018308	26	3.6	25	74	16	75	47	2	7	42	1.43
40018170--40018457	107	2.8	99	72	16	251	50	4	7	37	1.50
40018323--40018433	58	1.9	59	85	5	154	47	4	10	36	1.59
40019370--40019416	19	2.5	19	73	10	51	23	8	2	65	1.31
40031316--40031428	12	9.8	12	68	20	55	39	1	4	53	1.31
40031334--40031463	68	1.9	67	87	4	170	40	2	3	53	1.29
40031402--40031512	51	2.2	49	82	6	125	42	3	1	52	1.29
40034869--40036013	413	2.8	409	77	6	1037	32	14	14	38	1.87
40041659--40041702	19	2.3	19	88	0	61	56	27	2	13	1.49
40044330--40044727	90	4.4	90	91	5	629	48	10	10	30	1.70
40044325--40044714	187	2.1	185	93	3	671	48	10	10	30	1.70
40044917--40044962	22	2.2	20	82	14	58	30	8	2	58	1.40
40044924--40044974	22	2.3	22	100	0	102	27	7	3	60	1.42
40045040--40045091	17	3.1	17	91	0	86	38	9	1	50	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40045480--40045541	19	3.2	19	76	13	72	50	14	16	19	1.79
40048662--40048707	24	1.9	24	86	0	65	41	4	0	54	1.20
40051393--40051485	44	2.1	44	100	0	186	41	13	18	25	1.88
40073468--40073871	89	4.5	89	83	0	459	27	22	24	25	2.00
40073892--40074084	50	3.9	50	73	4	183	27	19	25	26	1.99
40073897--40074108	50	4.2	49	72	9	142	29	19	24	27	1.98
40073916--40074108	100	1.9	100	86	2	271	27	20	24	27	1.99
40074220--40074328	44	2.5	44	83	1	128	28	17	30	23	1.97
40074257--40074364	44	2.5	44	84	6	130	29	20	23	26	1.99
40074738--40074777	6	6.7	6	100	0	80	85	0	0	15	0.61

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204