genome.fa.s26.2.7.7.80.10.50.1000.97.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Length:  60343961

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  97  of  204  ( 24404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30197105--30197212	56	1.9	55	84	1	144	16	46	11	25	1.80
30203543--30203589	8	5.9	8	78	16	53	63	0	0	36	0.94
30222875--30222908	3	11.0	3	93	6	59	32	0	0	67	0.91
30222876--30222909	16	2.1	16	100	0	68	29	0	0	70	0.87
30228527--30228560	3	11.3	3	100	0	68	32	0	0	67	0.91
30230609--30230634	13	2.0	13	100	0	52	23	7	23	46	1.78
30232770--30232796	7	3.9	7	100	0	54	85	14	0	0	0.61
30233773--30233977	43	4.8	43	85	1	259	28	31	19	20	1.97
30233927--30234035	55	2.0	55	87	3	157	24	30	22	22	1.99
30234362--30234401	21	1.9	21	100	0	80	5	40	20	35	1.74
30234372--30234537	66	2.5	66	83	1	190	15	29	16	38	1.89
30239853--30239963	25	4.9	23	73	20	99	29	4	18	46	1.69
30239933--30240013	16	4.9	16	69	14	58	24	3	22	49	1.66
30239851--30240033	66	2.8	65	81	8	201	28	4	20	46	1.69
30239921--30239994	25	3.0	25	84	7	80	25	4	20	50	1.66
30239866--30239995	41	3.2	41	85	0	161	26	4	19	49	1.68
30239950--30240037	25	3.5	25	74	9	72	27	4	22	45	1.72
30240064--30240153	25	3.6	25	78	3	83	28	4	21	45	1.71
30240162--30240272	20	5.8	20	74	12	106	41	4	5	48	1.46
30240153--30240261	56	1.9	58	88	5	170	43	3	6	46	1.47
30243078--30243142	14	4.4	15	73	13	55	38	43	0	18	1.50
30243087--30243157	22	3.2	22	81	0	88	38	42	0	19	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30243662--30243817	41	3.8	41	91	1	242	26	30	25	17	1.98
30243853--30243927	39	1.9	38	89	2	114	21	26	18	33	1.96
30244293--30244334	22	1.9	22	85	0	57	47	11	11	28	1.76
30245174--30245216	23	1.9	22	85	4	59	18	13	27	39	1.89
30248911--30248957	19	2.4	19	82	10	60	36	0	4	59	1.17
30252746--30252796	18	2.8	18	84	0	66	45	0	3	50	1.20
30258139--30258262	19	6.6	19	68	21	84	38	22	17	20	1.93
30258140--30258242	38	2.7	38	95	0	179	38	22	19	19	1.93
30258229--30258263	17	2.1	17	100	0	70	42	22	11	22	1.85
30258235--30258394	58	2.8	56	81	4	169	33	22	22	21	1.97
30259746--30259805	11	5.5	11	75	13	54	65	1	0	33	1.03
30259790--30259850	22	2.6	24	80	17	58	68	11	0	19	1.19
30260808--30260858	17	3.0	17	82	5	59	72	0	17	9	1.11
30260931--30260979	21	2.3	22	85	3	64	32	0	2	65	1.04
30262301--30262368	30	2.3	31	82	7	79	42	5	5	45	1.52
30262736--30262775	17	2.3	17	95	4	71	60	0	35	5	1.19
30265070--30265124	20	2.7	20	82	2	65	63	7	1	27	1.31
30265092--30265129	20	1.9	20	94	0	67	63	5	2	28	1.30
30270347--30270379	16	2.1	16	88	11	50	60	0	3	36	1.12
30274158--30274342	101	1.8	102	89	3	293	23	17	28	31	1.97
30274149--30274349	51	4.0	50	79	4	208	23	16	28	30	1.97
30274351--30274438	45	2.0	45	93	0	149	26	18	21	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30279887--30280102	101	2.1	101	80	9	226	24	16	27	31	1.96
30279917--30280102	51	3.7	50	76	7	196	23	17	26	32	1.96
30280109--30280203	45	2.1	45	92	0	163	26	18	24	30	1.98
30282432--30282473	20	2.1	20	86	0	57	47	0	7	45	1.30
30290134--30290173	16	2.6	16	80	4	55	40	25	20	15	1.90
30290155--30290264	41	2.7	41	85	0	139	34	24	18	22	1.96
30290914--30290947	17	1.9	18	88	5	52	32	11	5	50	1.63
30302372--30302400	14	2.1	14	100	0	58	79	6	0	13	0.93
30303471--30303509	19	2.1	19	85	0	51	46	0	7	46	1.31
30303489--30303538	16	3.0	17	82	5	66	58	0	2	40	1.10
30304161--30304192	13	2.4	14	94	5	57	75	0	0	25	0.81
30304160--30304194	14	2.5	15	86	13	56	74	0	0	25	0.82
30326893--30326932	21	1.9	21	84	0	53	25	10	15	50	1.74
30328640--30328758	38	3.2	37	75	4	96	24	21	22	31	1.99
30335432--30335523	47	2.0	47	93	0	157	48	16	11	22	1.78
30340200--30340340	38	3.8	36	75	11	106	29	26	20	24	1.99
30340279--30340363	38	2.3	36	83	4	98	30	28	16	24	1.96
30343393--30343465	8	8.4	9	71	23	59	43	0	0	56	0.99
30343394--30343467	5	15.4	5	74	23	70	43	0	0	56	0.99
30344057--30344101	23	1.9	24	86	13	67	55	2	22	20	1.54
30344703--30344745	23	2.0	23	86	9	63	11	4	39	44	1.62
30349252--30349285	16	2.1	16	88	0	50	35	20	0	44	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30359006--30359039	15	2.3	15	90	5	52	70	2	0	26	1.01
30359608--30359642	16	2.1	17	89	5	54	51	5	0	42	1.25
30359777--30359827	23	2.2	24	89	3	77	45	0	3	50	1.20
30366842--30367148	153	2.0	153	96	0	560	24	18	7	50	1.72
30377378--30377511	62	2.1	63	84	1	180	21	17	28	32	1.96
30381023--30381129	20	5.2	21	74	9	96	23	2	28	45	1.67
30381023--30381143	7	17.7	7	69	14	65	23	2	28	46	1.65
30392714--30392783	34	2.1	34	91	0	113	28	12	5	52	1.62
30393693--30393739	18	2.7	17	75	12	51	38	17	2	42	1.61
30400791--30400823	17	1.9	17	93	0	57	33	33	9	24	1.87
30402614--30402768	33	4.6	33	72	17	115	34	27	19	19	1.96
30402565--30402745	75	2.4	76	88	1	265	33	27	16	23	1.96
30402788--30402988	51	4.0	51	78	8	221	30	29	16	23	1.96
30404927--30404973	24	2.0	24	83	8	60	17	34	0	48	1.47
30409929--30409976	25	1.9	25	86	0	69	33	14	14	37	1.87
30410706--30410788	39	2.1	40	78	14	93	27	24	18	30	1.98
30413454--30413829	194	1.9	194	89	1	583	29	14	18	37	1.91
30413792--30413887	49	2.0	47	92	8	158	29	3	11	56	1.50
30417029--30417070	15	2.9	14	80	16	50	78	2	16	2	0.96
30419988--30420376	194	2.0	194	94	0	688	30	15	19	35	1.93
30420340--30420435	49	2.0	47	90	8	149	28	4	11	56	1.53
30422266--30422304	20	2.0	20	89	0	60	41	5	15	38	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30422577--30422635	31	1.9	31	83	10	77	40	5	10	44	1.60
30426574--30426649	31	2.5	30	80	4	89	21	3	2	72	1.13
30426851--30426879	3	9.7	3	100	0	58	0	0	31	68	0.89
30433960--30433987	3	9.3	3	100	0	56	67	0	0	32	0.91
30438160--30438219	30	2.0	31	86	3	86	40	0	40	20	1.52
30438417--30438453	9	4.1	9	85	0	56	29	8	13	48	1.71
30440798--30440860	30	2.1	30	90	0	99	28	1	11	58	1.41
30447659--30447725	34	1.9	35	90	3	109	34	8	10	46	1.70
30447883--30447933	26	2.2	24	78	21	56	60	5	0	33	1.21
30463888--30463947	29	2.1	29	93	0	102	43	18	8	30	1.79
30466519--30466610	34	2.7	34	81	8	91	34	13	15	36	1.86
30468823--30468855	15	2.2	15	94	0	57	27	18	15	39	1.90
30488221--30488255	18	1.9	18	88	0	52	20	5	5	68	1.31
30491536--30491565	15	2.0	15	100	0	60	53	6	20	20	1.67
30499368--30499413	20	2.3	20	100	0	92	41	13	10	34	1.79
30500525--30500564	20	2.0	20	100	0	80	20	20	20	40	1.92
30502694--30502718	12	2.1	12	100	0	50	24	36	24	16	1.94
30502881--30502956	9	8.4	9	89	0	98	43	23	7	25	1.80
30502881--30502956	27	2.8	27	87	0	116	43	23	7	25	1.80
30503273--30503310	18	2.1	18	100	0	76	21	21	26	31	1.98
30504673--30504846	9	18.3	9	67	21	63	62	5	1	31	1.25
30504776--30504847	35	2.0	36	84	7	94	65	2	0	31	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30511781--30511816	19	1.9	19	88	5	56	41	2	16	38	1.63
30512392--30512460	9	7.6	9	74	9	50	28	4	1	65	1.21
30517288--30517349	32	1.9	32	90	0	97	43	9	4	41	1.59
30522548--30522733	50	3.6	50	79	7	176	24	28	19	27	1.99
30526213--30526251	19	2.1	19	100	0	78	30	25	10	33	1.89
30529024--30529219	50	3.8	51	81	8	218	22	28	21	26	1.99
30533140--30533165	10	2.6	10	100	0	52	46	19	11	23	1.82
30533672--30533720	19	2.8	17	79	14	55	42	0	30	26	1.55
30533806--30533865	30	2.0	30	83	3	75	41	0	38	20	1.52
30534079--30534115	9	4.1	9	85	0	56	32	10	10	45	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204