genome.fa.s26.2.7.7.80.10.50.1000.173.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Length:  60343961

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  173  of  204  ( 24404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51463618--51463698	34	2.5	32	82	9	101	81	0	14	3	0.82
51463614--51463678	20	3.0	21	84	8	87	78	0	21	0	0.75
51463614--51463684	26	3.0	23	82	12	72	78	0	19	1	0.82
51463673--51463698	7	3.7	7	100	0	52	88	0	0	11	0.52
51463851--51463883	5	6.6	5	100	0	66	36	0	0	63	0.95
51464043--51464108	19	3.5	18	78	15	62	31	15	9	43	1.77
51464043--51464108	20	3.5	19	79	16	66	31	15	9	43	1.77
51464335--51464869	18	29.1	18	71	16	316	29	11	11	46	1.76
51464429--51464475	24	2.0	24	87	8	69	46	8	6	38	1.60
51464703--51464765	20	3.0	22	77	11	78	28	9	9	52	1.65
51464703--51464776	21	3.7	21	79	13	77	32	10	8	48	1.67
51464749--51464878	53	2.4	52	78	6	136	33	10	11	44	1.75
51465761--51465970	107	2.0	107	80	7	239	20	28	20	30	1.98
51474762--51474791	15	2.0	15	100	0	60	26	0	0	73	0.84
51476667--51476753	46	1.9	45	92	2	147	51	18	6	22	1.69
51494733--51494790	25	2.3	26	93	3	100	32	13	12	41	1.82
51496617--51496675	23	2.6	23	76	7	57	30	0	3	66	1.08
51499847--51499916	3	23.3	3	72	5	52	58	8	2	30	1.42
51499835--51499916	24	3.4	24	75	9	62	59	9	2	28	1.42
51499835--51499904	12	5.8	12	74	0	50	57	11	2	28	1.48
51503539--51503591	8	6.6	8	85	8	54	47	0	1	50	1.12
51505647--51505689	18	2.4	18	84	7	52	55	0	2	41	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51505779--51505855	14	5.0	15	71	20	52	42	14	9	33	1.77
51505795--51505834	20	2.0	20	90	0	62	50	12	10	27	1.72
51505783--51505849	34	1.9	35	90	3	109	46	13	8	31	1.74
51507442--51507471	2	15.0	2	100	0	60	50	0	0	50	1.00
51511843--51511903	17	3.5	17	72	16	61	27	13	11	47	1.77
51511835--51511905	36	2.0	36	97	0	133	28	12	12	46	1.78
51511835--51511886	19	2.9	18	72	16	54	26	13	13	46	1.80
51514346--51514411	31	2.1	33	82	5	82	56	0	28	15	1.40
51515361--51515386	2	13.0	2	100	0	52	50	0	0	50	1.00
51527332--51527388	5	11.6	5	86	3	53	24	45	15	14	1.83
51529559--51529589	16	1.9	16	93	0	53	22	0	6	70	1.09
51529640--51529678	19	2.0	20	85	5	53	23	10	7	58	1.56
51531242--51531268	13	2.1	13	100	0	54	29	14	0	55	1.40
51532121--51532170	25	2.0	25	88	0	73	20	22	22	36	1.96
51537045--51537287	50	4.8	50	90	0	360	26	22	30	20	1.98
51539379--51539424	21	2.0	24	84	12	62	47	8	4	39	1.54
51553529--51553558	15	2.0	15	93	0	51	63	6	6	23	1.43
51564515--51564559	3	15.0	3	95	0	81	66	2	0	31	1.04
51564580--51564796	95	2.3	96	80	10	252	36	17	10	35	1.85
51564818--51564883	29	2.2	28	82	12	71	34	0	3	62	1.11
51570054--51570122	12	5.5	13	76	11	72	30	1	7	60	1.32
51570045--51570117	12	5.8	13	77	7	71	26	2	6	64	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51570058--51570122	25	2.6	26	80	7	80	29	1	6	63	1.28
51570045--51570117	37	1.9	38	94	2	130	26	2	6	64	1.32
51574344--51574401	18	3.1	18	80	9	55	58	0	1	39	1.08
51577597--51577664	12	5.5	13	74	15	63	30	1	7	60	1.33
51577588--51577659	12	5.8	13	76	11	62	26	2	6	63	1.33
51577588--51577659	37	1.9	37	91	5	119	26	2	6	63	1.33
51579559--51579598	3	14.0	3	80	19	50	62	2	0	35	1.09
51579559--51579598	13	2.8	16	82	17	52	62	2	0	35	1.09
51579845--51579943	49	2.0	48	84	11	130	34	2	4	59	1.28
51579859--51579917	29	2.0	30	83	9	77	35	0	3	61	1.13
51585132--51585193	12	5.1	12	82	9	81	29	1	8	61	1.34
51585121--51585193	36	2.0	37	94	2	130	27	2	8	61	1.38
51593833--51593859	12	2.2	12	100	0	54	48	18	18	14	1.82
51598564--51598594	6	5.2	6	92	0	53	51	12	16	19	1.76
51613569--51613649	25	3.3	25	68	8	76	35	18	25	19	1.95
51613580--51613803	49	4.5	49	79	10	197	35	20	25	19	1.96
51613584--51613797	25	8.7	24	74	7	180	34	20	25	19	1.96
51613584--51613819	99	2.4	99	77	9	257	35	20	25	19	1.96
51618226--51618271	3	15.7	3	90	4	76	32	2	0	65	1.05
51623330--51623369	14	2.9	14	80	0	53	52	2	5	40	1.37
51623455--51623487	16	2.1	16	94	0	57	63	0	3	33	1.10
51625144--51625538	45	8.7	45	73	7	273	27	22	18	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51625041--51625495	228	2.0	228	91	0	741	28	20	18	32	1.96
51625805--51626102	45	6.6	46	80	4	322	30	22	17	29	1.97
51625805--51626102	90	3.3	90	83	1	375	30	22	17	29	1.97
51627383--51627434	6	9.0	6	87	4	54	0	25	0	75	0.81
51627387--51627431	3	15.7	3	81	9	58	0	26	0	73	0.84
51627383--51627434	12	4.5	12	83	9	72	0	25	0	75	0.81
51631548--51631631	40	2.1	40	95	2	152	69	4	4	21	1.26
51631652--51631736	30	2.8	30	73	19	77	51	1	7	40	1.37
51631881--51631917	3	12.0	3	88	5	56	62	0	2	35	1.10
51639164--51639484	173	1.8	175	82	5	407	36	15	9	38	1.80
51646547--51646622	23	3.3	23	71	10	66	38	19	22	19	1.94
51646592--51646646	24	2.4	24	84	6	69	41	20	20	18	1.90
51649760--51649921	87	1.9	86	85	2	227	27	14	22	35	1.93
51652194--51652265	28	2.6	28	82	8	85	23	12	6	56	1.60
51652910--51652934	13	1.9	13	100	0	50	24	16	12	48	1.79
51653528--51653607	29	2.8	29	82	3	90	42	18	27	11	1.84
51653582--51653624	17	2.5	18	88	7	63	39	20	27	11	1.88
51655158--51655268	50	2.2	50	82	3	125	37	20	19	21	1.94
51663875--51664021	58	2.5	58	80	3	143	32	13	21	31	1.92
51666165--51666363	102	2.0	102	89	2	310	39	11	19	29	1.87
51668073--51668107	3	12.0	3	93	6	63	68	0	31	0	0.90
51673830--51673886	22	2.7	22	79	15	66	17	3	0	78	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51673830--51673886	11	5.4	11	78	12	57	17	3	0	78	0.88
51687110--51687164	28	2.0	28	88	0	83	45	16	12	25	1.83
51687665--51687719	25	2.1	25	83	6	65	58	7	5	29	1.48
51690060--51690153	44	2.1	44	86	7	127	35	5	24	35	1.78
51690046--51690153	46	2.4	46	83	6	132	31	6	25	37	1.81
51691175--51691267	35	2.5	37	84	8	120	49	0	1	49	1.07
51691214--51691267	8	6.9	8	76	16	51	53	0	1	44	1.11
51691207--51691258	22	2.4	22	86	0	68	50	0	1	48	1.12
51691178--51691292	35	3.1	39	80	12	109	51	1	0	46	1.17
51699709--51699786	19	4.0	19	77	11	77	37	8	1	52	1.41
51699868--51699908	15	2.6	16	84	7	57	43	0	0	56	0.99
51700130--51700154	13	1.9	13	100	0	50	44	8	0	48	1.32
51704198--51704276	35	2.3	35	97	0	149	31	22	16	29	1.96
51705115--51705150	9	4.1	9	96	3	65	0	22	0	77	0.76
51705134--51705189	24	2.4	24	82	8	71	3	26	7	62	1.38
51705256--51705295	21	1.9	21	89	0	62	45	5	40	10	1.60
51705253--51705318	24	2.8	24	78	0	69	43	9	37	9	1.68
51705259--51705318	27	2.2	27	84	0	75	45	6	38	10	1.64
51705390--51705478	15	6.2	15	72	13	71	1	26	1	70	1.01
51705397--51705478	6	13.2	6	75	16	60	1	26	1	70	1.02
51705466--51705562	48	2.0	48	85	0	131	7	38	2	52	1.41
51705503--51705563	21	2.9	21	73	7	61	6	39	1	52	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51713641--51713766	62	2.0	62	93	3	218	34	15	11	38	1.82
51715334--51715432	50	2.0	50	94	4	173	33	17	11	38	1.85
51722647--51722698	16	3.3	16	75	2	52	67	1	0	30	1.02
51722882--51722941	22	2.7	22	76	0	66	68	10	11	10	1.40
51723869--51723927	10	6.1	10	80	4	68	69	1	1	27	1.07
51723869--51723927	28	2.1	28	84	6	75	69	1	1	27	1.07
51724194--51724230	11	3.0	13	76	15	51	59	0	0	40	0.97
51725432--51725474	16	2.7	15	79	10	50	55	2	0	41	1.12
51726098--51726125	9	3.1	9	100	0	56	21	0	0	78	0.75
51726498--51726543	13	3.5	13	81	0	56	21	13	26	39	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204