genome.fa.s26.2.7.7.80.10.50.1000.145.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Length:  60343961

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  145  of  204  ( 24404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44351330--44351805	9	52.1	9	68	24	116	46	13	1	38	1.52
44351365--44351397	16	2.1	16	100	0	66	45	24	0	30	1.53
44351384--44351779	31	12.5	31	80	8	456	46	12	1	38	1.51
44351397--44351777	65	5.9	65	85	5	510	47	12	1	38	1.51
44351758--44351805	16	2.8	17	87	12	71	43	22	0	33	1.54
44355396--44355460	21	3.1	21	79	0	76	35	18	43	3	1.66
44355862--44356110	42	5.9	42	80	9	142	26	22	21	30	1.99
44355880--44356191	85	3.7	84	83	7	355	25	22	20	30	1.98
44355880--44356191	43	7.3	42	84	6	348	25	22	20	30	1.98
44355923--44356171	127	2.0	128	87	4	360	26	22	20	30	1.99
44359199--44359338	43	3.3	42	79	6	140	30	26	17	25	1.98
44361484--44361524	20	2.0	20	90	0	64	56	2	4	36	1.34
44363286--44363441	44	3.6	44	76	1	170	26	24	19	29	1.99
44363278--44363444	87	1.9	87	91	0	271	25	24	20	29	1.99
44363635--44364013	44	8.8	44	74	6	238	28	19	18	32	1.96
44363532--44364133	219	2.8	219	86	1	894	28	19	17	34	1.95
44379441--44379465	12	2.1	12	100	0	50	84	0	0	16	0.63
44401080--44401154	26	2.9	26	89	0	114	42	24	18	14	1.88
44401331--44401410	27	3.0	27	83	7	108	28	17	16	37	1.91
44401374--44401565	27	7.2	26	77	10	138	20	14	16	48	1.81
44401374--44401565	54	3.6	52	81	6	215	20	14	16	48	1.81
44401687--44401718	9	3.6	9	95	0	55	3	18	15	62	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44404274--44404312	20	2.0	20	94	0	69	74	0	0	25	0.82
44406122--44406161	16	2.6	16	96	4	73	45	5	0	50	1.23
44407865--44407923	20	2.9	21	73	19	61	71	6	10	11	1.31
44408923--44408950	13	2.2	13	100	0	56	35	14	7	42	1.73
44409524--44409645	45	2.7	45	83	2	147	29	13	22	34	1.93
44413944--44413982	20	2.0	20	94	0	69	74	0	0	25	0.82
44416168--44416194	13	2.1	13	100	0	54	40	14	7	37	1.74
44426144--44426457	43	7.3	43	90	2	436	18	18	32	31	1.95
44427321--44427345	11	2.3	11	100	0	50	60	0	24	16	1.36
44439821--44439864	16	2.9	14	78	21	52	45	9	0	45	1.35
44439821--44439892	32	2.3	31	83	9	83	45	11	0	43	1.39
44450584--44450928	180	1.9	180	89	1	530	22	31	10	35	1.88
44457824--44457855	13	2.5	13	95	5	57	53	18	0	28	1.45
44461006--44461080	15	5.1	15	68	18	50	60	1	2	36	1.20
44460980--44461077	43	2.3	43	92	0	169	56	2	3	38	1.27
44464391--44464423	15	2.1	16	88	5	50	6	18	3	72	1.18
44473342--44473386	13	3.5	13	90	0	72	33	44	20	2	1.63
44478223--44478278	27	2.1	27	83	3	69	33	23	26	16	1.95
44478093--44478464	105	3.6	104	89	2	559	30	29	20	19	1.97
44478793--44478857	30	2.2	29	81	8	76	30	27	6	35	1.81
44478800--44478857	30	1.9	30	85	0	80	31	24	6	37	1.82
44482503--44482584	25	3.4	25	70	21	66	17	29	21	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44482450--44482618	26	6.8	24	71	11	92	16	25	23	34	1.95
44482670--44482717	25	1.9	25	86	0	69	25	29	14	31	1.95
44484879--44485023	74	2.0	73	94	4	256	34	17	20	27	1.95
44494059--44494203	74	2.0	73	90	1	227	37	17	18	26	1.93
44494578--44494602	10	2.5	10	100	0	50	44	0	8	48	1.32
44494680--44494714	12	2.9	12	86	0	52	48	0	11	40	1.39
44494672--44494714	14	3.2	14	77	12	54	48	0	11	39	1.40
44494761--44494828	31	2.2	30	84	7	84	42	1	11	44	1.50
44496902--44497144	50	4.7	50	84	3	288	24	21	30	23	1.99
44497393--44497437	20	2.2	20	92	0	72	51	4	24	20	1.66
44497726--44497850	60	2.1	60	96	0	232	42	8	20	29	1.80
44498319--44498455	43	3.2	41	75	6	112	27	25	24	22	2.00
44498491--44498710	43	5.1	43	78	3	203	27	29	17	25	1.98
44498319--44498710	86	4.6	84	76	8	312	26	27	20	25	1.99
44499061--44499153	21	4.4	21	83	0	105	5	43	16	35	1.71
44499101--44499165	21	3.1	21	84	0	76	4	43	18	33	1.71
44499158--44499290	66	2.0	66	88	5	198	14	27	18	39	1.90
44499164--44499313	66	2.3	66	86	4	196	14	26	18	40	1.89
44502258--44502330	25	2.7	25	81	10	74	34	1	16	47	1.55
44502313--44502777	9	52.9	9	67	19	107	38	2	13	44	1.56
44502317--44502464	34	4.5	31	70	18	84	37	1	18	43	1.59
44502451--44503699	31	39.2	32	73	17	568	41	2	10	45	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44502247--44502777	16	30.2	18	65	21	114	38	2	14	45	1.57
44502635--44502804	22	8.0	21	66	24	81	38	2	11	47	1.55
44502818--44502903	22	4.2	22	75	17	103	41	0	9	48	1.35
44502604--44503765	277	4.1	277	91	4	1772	41	2	11	45	1.53
44502818--44503619	65	13.1	56	76	16	474	41	2	10	45	1.50
44502916--44503077	22	7.6	22	68	22	87	38	3	11	46	1.56
44503097--44503331	9	25.6	9	66	22	55	39	2	10	47	1.52
44503095--44503180	22	4.2	22	75	17	103	41	0	9	48	1.35
44503142--44503195	22	2.3	22	87	9	72	40	1	11	46	1.50
44503191--44503354	22	7.7	22	67	24	75	38	3	11	46	1.56
44503256--44503358	22	4.9	22	68	21	76	38	1	11	47	1.51
44503377--44503435	17	3.2	17	70	25	57	42	0	6	50	1.28
44502727--44503525	94	8.7	90	80	13	898	41	2	10	45	1.51
44503496--44503665	90	1.9	94	92	5	294	41	1	11	46	1.47
44503685--44503737	16	3.3	16	79	12	56	32	1	22	43	1.64
44503688--44503734	23	2.0	23	95	0	85	31	2	21	44	1.64
44506646--44506744	7	13.0	8	67	19	52	34	47	1	17	1.54
44508570--44508971	41	9.8	41	82	4	409	34	25	24	15	1.95
44508587--44508971	82	4.7	82	87	2	479	35	25	23	15	1.94
44521982--44522021	14	2.9	14	100	0	80	5	22	0	72	1.04
44525414--44525451	18	2.2	17	90	4	58	34	2	0	63	1.09
44525536--44525573	18	2.2	17	95	4	67	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44525343--44525951	122	5.1	120	95	2	1057	41	1	4	53	1.27
44525536--44525600	16	4.2	16	75	16	66	38	0	0	61	0.96
44525657--44525691	17	2.0	18	94	5	63	40	0	0	60	0.97
44525343--44525951	241	2.5	239	94	3	1055	41	1	4	53	1.27
44525770--44525810	18	2.3	18	87	4	57	43	0	2	53	1.13
44525343--44526050	241	3.0	239	87	6	798	42	1	3	51	1.31
44526101--44526190	44	2.0	44	86	4	126	35	30	5	28	1.80
44526172--44526224	16	3.3	16	83	0	79	26	32	5	35	1.80
44529592--44529960	18	20.5	17	72	13	161	43	9	13	33	1.77
44529592--44529969	37	10.5	35	69	12	160	43	9	13	33	1.76
44529633--44529966	18	18.4	19	71	15	183	43	9	13	33	1.77
44530114--44530176	14	4.5	14	88	6	83	0	19	0	80	0.70
44530115--44530162	9	5.2	9	78	12	53	0	16	0	83	0.65
44530114--44530174	16	4.2	16	75	23	64	0	18	0	81	0.68
44530114--44530162	11	4.8	10	85	9	55	0	16	0	83	0.64
44530114--44530174	27	2.3	26	91	5	95	0	18	0	81	0.68
44530300--44530341	7	6.4	7	78	15	54	0	11	2	85	0.68
44530301--44530389	6	14.3	6	72	13	65	0	23	1	75	0.87
44530861--44531016	30	5.2	29	87	6	206	40	1	21	36	1.62
44530861--44531016	59	2.6	60	86	4	226	40	1	21	36	1.62
44531185--44531390	78	2.6	76	87	6	288	36	22	16	23	1.94
44531359--44531427	35	2.0	35	100	0	138	37	17	15	28	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44531281--44531500	110	2.0	113	90	4	349	36	20	16	27	1.93
44531203--44531582	188	2.0	190	87	3	552	36	20	16	25	1.94
44531394--44531984	78	7.6	77	87	5	777	35	20	17	26	1.95
44531171--44531650	266	1.8	266	86	5	709	35	21	17	25	1.95
44531394--44531984	157	3.8	152	84	6	769	35	20	17	26	1.95
44531394--44531981	310	1.9	311	88	5	904	35	20	17	26	1.95
44532838--44532922	1	85.0	1	71	0	62	4	3	5	85	0.81
44532867--44532922	10	5.7	10	91	4	87	1	1	7	89	0.63
44532831--44532923	29	3.2	28	83	4	114	6	4	5	83	0.89
44536431--44536792	46	8.6	45	83	14	415	35	14	20	29	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204