genome.fa.s26.2.7.7.80.10.50.1000.167.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Length:  60343961

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  167  of  204  ( 24404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50152355--50152395	21	2.0	21	100	0	82	34	0	0	65	0.93
50152359--50152403	20	2.2	21	88	4	65	35	0	2	62	1.08
50156593--50156633	21	2.0	21	85	9	57	9	14	14	60	1.57
50161060--50161140	41	2.0	38	79	13	83	24	1	4	69	1.16
50161199--50161270	23	3.1	23	76	11	76	72	2	1	23	1.06
50161329--50161717	142	2.8	140	82	6	439	51	8	12	26	1.68
50168246--50168565	173	1.8	173	80	5	387	29	25	18	26	1.98
50172293--50172329	18	2.0	19	94	5	67	48	13	5	32	1.65
50186002--50186092	26	3.5	26	89	4	123	2	30	18	48	1.60
50188393--50188440	18	2.7	18	93	0	78	35	14	12	37	1.84
50188863--50189035	72	2.4	73	86	5	255	25	6	13	54	1.62
50191079--50191113	13	2.7	13	81	0	52	37	25	8	28	1.85
50193981--50194005	13	1.9	13	100	0	50	56	0	0	44	0.99
50195118--50195836	154	4.8	148	76	12	668	32	8	5	53	1.54
50195173--50195699	288	1.8	289	88	4	805	32	8	5	53	1.55
50195461--50195836	153	2.5	154	83	3	465	31	8	6	53	1.57
50195927--50196758	150	5.5	149	85	6	1101	53	6	9	30	1.60
50197036--50197069	18	1.9	18	88	5	52	29	0	5	64	1.17
50197524--50197557	18	2.0	18	88	11	54	41	0	0	58	0.98
50198109--50198141	17	2.0	16	94	5	57	54	0	0	45	0.99
50198070--50198170	19	5.6	19	72	13	72	61	1	1	34	1.19
50198108--50198205	9	10.8	9	70	12	58	63	0	3	33	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50198133--50198177	19	2.3	21	81	14	60	64	0	4	31	1.13
50198155--50198213	28	2.1	29	83	3	75	67	0	3	28	1.06
50198324--50198373	19	2.6	19	74	0	64	36	4	0	60	1.16
50199188--50199230	19	2.2	20	88	8	63	44	0	6	48	1.29
50204467--50204497	16	1.9	16	93	0	53	19	0	0	80	0.71
50204809--50204866	28	2.1	27	87	3	80	27	5	3	63	1.31
50208151--50208190	12	3.2	12	89	3	53	32	5	2	60	1.32
50208363--50208436	38	1.9	38	83	5	96	35	10	2	51	1.51
50209081--50209390	109	2.8	109	89	2	460	29	15	20	34	1.93
50211626--50211673	3	16.0	3	100	0	96	66	0	0	33	0.92
50217575--50217609	18	1.9	18	88	0	52	0	25	34	40	1.56
50217838--50217872	6	5.8	6	86	0	52	0	11	31	57	1.34
50217770--50217896	51	2.3	54	75	18	129	15	11	31	40	1.84
50219400--50219424	13	1.9	13	100	0	50	56	0	0	44	0.99
50223916--50224034	44	2.7	44	86	0	166	42	17	4	36	1.69
50228002--50228036	18	1.9	18	88	0	52	71	5	8	14	1.29
50228101--50228138	16	2.5	16	87	8	53	42	2	0	55	1.14
50228101--50228141	15	2.8	14	82	10	55	41	2	0	56	1.13
50229228--50229262	18	1.9	18	88	0	52	74	0	25	0	0.82
50232702--50232766	32	2.0	32	100	0	130	29	21	21	27	1.99
50239996--50240028	3	11.0	3	100	0	66	66	0	0	33	0.92
50240984--50241024	15	2.7	15	82	17	50	75	0	7	17	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50245785--50246122	50	6.8	50	80	4	335	33	27	13	26	1.93
50245802--50246085	100	2.9	99	86	3	410	33	27	13	26	1.94
50245785--50246118	150	2.2	148	83	4	413	33	27	12	25	1.93
50251727--50251883	43	3.7	42	82	6	174	22	19	29	29	1.98
50251726--50251883	84	1.9	84	84	5	212	22	18	29	29	1.98
50252044--50252075	16	1.9	17	93	6	57	40	0	21	37	1.54
50262275--50262299	7	3.6	7	100	0	50	28	0	12	60	1.32
50263389--50263511	25	5.1	25	76	15	141	42	0	14	43	1.45
50263560--50263773	28	8.2	24	73	20	116	52	15	6	25	1.67
50263556--50264207	23	26.2	24	86	8	627	50	19	4	25	1.67
50267249--50267613	124	2.9	125	92	1	617	33	21	15	28	1.95
50277642--50277753	59	1.9	59	90	1	181	50	17	12	18	1.77
50282161--50282214	16	3.4	17	77	12	60	14	25	0	59	1.36
50304085--50304794	73	9.4	73	79	11	720	29	16	21	32	1.95
50304085--50304994	144	6.2	144	74	15	741	28	16	21	33	1.95
50304157--50304794	222	2.8	228	87	5	873	29	16	21	32	1.96
50304361--50304794	240	1.8	239	89	3	683	29	15	20	33	1.94
50304812--50304994	74	2.6	69	82	6	222	25	15	24	34	1.94
50304618--50305370	196	3.7	198	79	11	778	26	14	21	37	1.92
50304966--50305354	218	1.8	212	85	5	548	25	15	21	37	1.93
50305225--50305605	73	4.9	74	76	14	297	27	16	22	33	1.95
50305431--50305461	14	2.3	14	94	5	55	12	12	9	64	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50305592--50305619	14	2.0	14	100	0	56	14	21	7	57	1.61
50305683--50305710	14	2.0	14	100	0	56	14	21	7	57	1.61
50305518--50305792	91	3.1	91	91	4	418	26	17	19	36	1.94
50305717--50305934	73	2.9	73	89	2	319	26	16	23	33	1.96
50305922--50305949	14	2.0	14	100	0	56	14	21	7	57	1.61
50305957--50306173	74	2.9	72	90	3	308	27	17	23	32	1.96
50305957--50306173	73	2.9	73	90	2	326	27	17	23	32	1.96
50306162--50306186	13	1.9	13	100	0	50	16	20	8	56	1.65
50306031--50306333	161	1.9	160	90	2	491	27	17	22	32	1.96
50305606--50306423	240	3.4	237	95	2	1419	26	17	21	34	1.95
50306175--50306415	74	3.3	73	84	5	297	27	17	20	35	1.94
50306392--50306433	14	2.9	15	85	7	59	14	14	7	64	1.48
50306395--50306444	14	3.6	14	81	7	57	20	12	4	64	1.43
50307191--50307487	30	9.8	30	91	1	468	25	47	3	24	1.67
50307191--50307487	91	3.3	91	96	0	533	25	47	3	24	1.67
50307191--50307487	121	2.5	121	91	1	488	25	47	3	24	1.67
50308078--50308135	25	2.3	25	78	0	62	36	5	1	56	1.32
50308154--50308212	25	2.5	24	78	10	68	33	8	6	50	1.59
50308170--50308218	25	2.0	25	91	0	80	34	8	6	51	1.57
50308370--50308417	16	3.1	15	90	6	69	31	2	2	64	1.16
50308370--50308421	8	6.5	8	82	8	61	30	1	1	65	1.14
50315792--50315844	25	2.1	25	82	0	61	43	0	9	47	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50320807--50320880	36	2.0	38	89	5	116	59	2	2	35	1.26
50321286--50321418	72	1.9	71	92	4	223	30	3	3	63	1.24
50321346--50321402	10	5.5	11	74	17	50	29	0	1	68	1.00
50321572--50321648	23	3.5	21	69	23	52	66	3	1	28	1.17
50321608--50321658	22	2.3	21	75	15	50	66	5	1	25	1.24
50321690--50321715	13	2.0	13	100	0	52	53	7	0	38	1.30
50322352--50322396	22	2.0	22	82	0	54	55	0	6	37	1.26
50329415--50329662	104	2.4	104	79	6	252	18	32	23	25	1.97
50333378--50333411	17	1.9	18	88	5	52	5	11	2	79	1.02
50334067--50334187	15	9.1	14	70	23	68	28	3	2	65	1.21
50334068--50334171	26	4.2	25	77	17	94	26	3	1	67	1.18
50334090--50334171	25	3.4	23	78	17	78	25	1	2	70	1.06
50336465--50336494	15	2.0	15	93	0	51	13	23	40	23	1.90
50345802--50345988	50	3.6	50	82	4	203	27	21	27	22	1.99
50352660--50352709	25	2.0	25	96	0	91	30	24	20	26	1.98
50355096--50355153	28	2.0	31	86	10	86	36	1	0	62	1.06
50355966--50356002	17	2.1	18	95	5	67	35	0	0	64	0.94
50360093--50360140	25	1.9	25	95	0	87	29	12	27	31	1.93
50371990--50372132	72	2.0	72	95	0	259	35	18	18	27	1.94
50372870--50372943	23	3.7	20	76	13	71	62	4	4	29	1.32
50372871--50372913	19	2.2	21	88	12	65	60	4	2	32	1.30
50372900--50372932	17	1.9	17	100	0	66	66	0	9	24	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50374516--50374619	44	2.4	44	80	6	122	29	19	21	29	1.97
50374752--50375292	220	2.5	219	84	2	654	26	24	18	30	1.98
50379798--50379836	5	7.4	5	83	11	51	0	17	2	79	0.84
50379796--50379838	17	2.5	17	92	3	68	0	18	2	79	0.85
50383210--50383252	19	2.2	21	88	12	65	60	4	2	32	1.30
50383239--50383271	17	1.9	17	100	0	66	66	0	9	24	1.20
50390782--50390811	14	2.1	14	100	0	60	20	13	6	60	1.55
50393365--50393389	9	2.8	9	100	0	50	24	0	8	68	1.16
50393675--50393860	97	1.9	97	98	0	363	27	9	23	39	1.86
50395771--50395820	25	2.0	25	100	0	100	28	24	12	36	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204