genome.fa.s26.2.7.7.80.10.50.1000.134.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Length:  60343961

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  134  of  204  ( 24404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41219529--41219701	85	2.0	84	83	1	211	27	14	25	32	1.95
41219529--41219656	43	3.0	41	83	10	168	25	15	26	32	1.96
41219535--41219702	43	4.0	42	81	3	167	28	14	25	30	1.95
41221123--41221163	16	2.6	16	88	7	57	29	14	0	56	1.39
41224645--41224683	18	2.1	19	85	4	53	30	23	0	46	1.53
41224802--41224866	23	2.8	23	92	0	112	47	32	9	10	1.70
41225827--41225878	21	2.5	22	90	6	81	53	0	0	46	1.00
41225825--41225869	12	3.7	12	84	3	63	53	0	0	46	1.00
41226249--41226277	15	1.9	15	100	0	58	55	13	0	31	1.39
41229638--41229683	18	2.6	18	86	6	58	13	13	4	69	1.33
41231152--41231191	20	2.0	21	85	14	57	52	20	5	22	1.65
41231993--41232069	14	5.0	15	71	20	52	42	14	9	33	1.77
41232009--41232048	20	2.0	20	90	0	62	50	12	10	27	1.72
41231997--41232063	34	1.9	35	90	3	109	46	13	8	31	1.74
41235769--41235832	20	3.0	22	61	21	55	43	15	14	26	1.85
41235751--41235832	41	2.0	41	100	0	164	43	17	14	24	1.86
41239930--41239974	22	2.0	22	83	8	56	42	0	0	57	0.98
41239950--41240004	8	7.4	8	87	8	64	41	0	0	58	0.98
41239932--41240023	28	3.3	28	82	7	107	41	0	0	58	0.98
41239950--41240022	36	2.0	36	94	5	130	39	0	0	60	0.97
41244136--41244166	9	3.4	9	90	0	53	38	22	12	25	1.90
41249495--41249607	51	2.2	51	95	0	199	32	13	24	29	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41252218--41252244	12	2.2	12	100	0	54	37	14	0	48	1.45
41256085--41256138	25	2.2	25	86	6	74	22	14	5	57	1.58
41257765--41257818	7	7.4	7	78	21	58	72	0	12	14	1.13
41257768--41257818	14	3.5	14	82	10	66	74	0	11	13	1.07
41258028--41258065	14	2.8	14	96	4	69	36	13	21	28	1.91
41259254--41259944	44	15.8	44	64	13	185	29	17	24	28	1.97
41259209--41260280	517	2.1	522	86	3	1476	29	17	24	29	1.97
41259198--41260246	132	8.0	131	90	2	1497	29	17	24	28	1.97
41260952--41260987	17	2.1	17	89	0	54	77	5	16	0	0.94
41261172--41261206	16	2.3	15	90	5	52	0	14	5	80	0.89
41262153--41262316	51	3.2	51	92	0	283	34	12	22	30	1.92
41265121--41265178	25	2.4	24	77	11	66	34	3	6	55	1.44
41270425--41270477	21	2.5	21	90	6	81	30	35	9	24	1.87
41274257--41274395	42	3.2	42	77	7	120	30	25	17	26	1.97
41280867--41280984	33	3.6	33	78	11	134	40	14	8	36	1.76
41284046--41284127	26	3.0	27	75	12	87	43	1	2	52	1.22
41284181--41284215	18	2.0	17	88	5	52	45	0	0	54	0.99
41284128--41284472	120	2.9	120	98	0	665	44	1	6	47	1.39
41284301--41284335	18	2.0	17	88	5	52	45	0	0	54	0.99
41284421--41284455	18	2.0	17	88	5	52	45	0	0	54	0.99
41284691--41284726	16	2.2	16	100	0	72	38	36	0	25	1.56
41285189--41285230	20	2.2	20	87	8	61	38	0	9	52	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41286099--41286155	27	2.1	27	83	9	71	49	3	1	45	1.29
41289468--41289515	21	2.3	21	81	0	60	27	2	31	39	1.68
41289577--41289624	21	2.3	21	96	0	87	25	0	39	35	1.56
41291457--41291503	22	2.1	22	96	0	85	38	4	12	44	1.62
41292613--41292650	19	2.0	19	94	0	67	47	7	0	44	1.32
41292717--41292767	25	2.0	25	96	0	93	45	15	1	37	1.58
41292836--41292879	19	2.3	19	96	0	79	47	11	0	40	1.39
41292915--41292947	17	1.9	17	88	11	50	39	6	0	54	1.25
41292944--41292994	25	2.0	25	96	0	93	45	15	1	37	1.58
41292613--41293118	227	2.2	228	96	0	933	44	13	1	41	1.53
41293063--41293106	19	2.3	19	92	0	70	47	11	2	38	1.52
41293102--41293692	9	65.2	9	75	14	486	45	17	1	36	1.56
41293102--41293728	235	2.7	233	90	5	955	44	17	1	36	1.57
41299204--41299243	12	3.3	12	82	0	53	42	15	37	5	1.68
41299663--41299953	42	6.9	42	83	8	337	25	22	20	31	1.98
41299663--41299952	126	2.3	126	85	7	392	25	22	20	31	1.98
41300045--41300087	21	2.0	21	90	0	68	46	27	13	11	1.78
41300805--41300846	17	2.6	16	79	17	50	45	9	9	35	1.69
41302724--41302881	83	1.9	83	89	0	244	36	5	15	43	1.68
41309665--41309947	50	5.7	50	85	1	309	29	21	27	21	1.99
41312540--41312583	12	3.6	12	84	3	52	45	4	22	27	1.72
41312637--41312675	14	2.9	14	88	3	53	51	10	17	20	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41312560--41312675	13	8.9	14	69	17	54	50	10	16	23	1.76
41312712--41312762	25	2.0	25	100	0	102	43	7	7	41	1.63
41313122--41313164	14	3.1	14	86	0	59	18	11	11	58	1.63
41313127--41313189	29	2.2	28	88	8	92	25	7	11	55	1.62
41313127--41313180	15	3.9	13	77	17	56	24	9	11	55	1.64
41313127--41313191	14	4.6	14	82	3	76	24	7	10	56	1.59
41313212--41313247	13	2.8	13	91	4	56	25	25	5	44	1.75
41313213--41313258	24	1.9	24	82	8	58	26	21	4	47	1.69
41317184--41317274	6	15.3	6	80	6	96	75	0	1	23	0.86
41317184--41317286	35	2.9	34	78	9	100	74	0	0	24	0.87
41317184--41317286	12	8.8	12	74	13	65	74	0	0	24	0.87
41324086--41324208	12	9.9	12	71	13	79	49	8	16	26	1.73
41324086--41324208	25	5.0	25	71	15	103	49	8	16	26	1.73
41327447--41327505	17	3.4	17	83	4	82	40	8	15	35	1.77
41327379--41327521	38	3.9	37	78	10	143	44	9	12	32	1.75
41327379--41327523	35	4.0	36	76	12	145	44	9	12	33	1.75
41327379--41327523	73	2.0	73	81	5	168	44	9	12	33	1.75
41328221--41328262	14	3.0	13	86	13	57	11	2	0	85	0.68
41328221--41328273	15	3.7	15	82	7	56	9	7	0	83	0.83
41328643--41328817	29	6.0	28	75	9	145	45	4	18	32	1.70
41328674--41328817	59	2.5	57	78	10	150	45	4	18	31	1.70
41328980--41330938	79	25.4	77	80	9	1887	36	19	16	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41328980--41332400	233	15.0	229	86	6	3859	36	19	16	27	1.94
41330989--41331843	79	11.0	78	81	8	978	36	19	17	27	1.94
41329106--41332400	905	3.6	903	89	4	4420	36	19	16	27	1.94
41331844--41332407	79	7.4	77	82	6	623	35	19	17	28	1.94
41333279--41333333	17	3.3	16	87	9	83	0	1	7	90	0.51
41333291--41333339	25	2.0	25	88	8	73	4	0	8	87	0.65
41333279--41333333	1	55.0	1	81	0	65	0	1	7	90	0.51
41339408--41339554	36	4.1	37	82	6	185	43	10	10	34	1.75
41339408--41339534	17	7.1	17	75	14	114	43	11	11	33	1.77
41339442--41339557	17	6.4	17	76	14	99	42	10	10	37	1.73
41339408--41339554	35	4.1	36	84	6	183	43	10	10	34	1.75
41340259--41340328	18	4.1	16	87	12	95	0	22	0	77	0.78
41340241--41340328	15	5.1	18	83	12	105	0	20	0	79	0.73
41340246--41340325	26	3.2	26	78	8	94	0	21	0	78	0.75
41340269--41340329	3	20.0	3	88	6	63	0	26	0	73	0.83
41340685--41340843	29	5.4	29	77	3	149	44	6	16	32	1.73
41340685--41340843	87	1.8	87	86	2	230	44	6	16	32	1.73
41340685--41340844	59	2.8	57	80	7	180	43	6	16	33	1.73
41340841--41340875	10	3.4	10	92	7	61	17	0	8	74	1.06
41340841--41340876	11	3.4	11	96	3	65	16	0	8	75	1.04
41345624--41345658	6	5.7	6	90	6	52	11	5	0	82	0.82
41346785--41346841	16	3.4	17	78	9	55	31	7	3	57	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41346884--41346960	35	2.2	33	82	13	93	40	7	1	50	1.39
41346992--41347234	120	2.0	120	98	0	468	36	12	5	46	1.64
41357808--41357876	22	3.0	23	80	8	77	37	8	0	53	1.32
41357808--41357876	24	3.0	24	82	6	88	37	8	0	53	1.32
41357992--41358050	30	2.0	29	90	3	91	30	11	5	52	1.59
41362796--41362821	5	5.2	5	100	0	52	19	0	0	80	0.71
41365681--41366196	109	4.7	108	89	5	763	34	19	16	30	1.93
41365681--41366196	217	2.4	218	90	3	817	34	19	16	30	1.93
41366170--41366211	18	2.4	17	84	11	57	30	9	7	52	1.61
41366325--41366376	25	2.1	24	85	3	68	73	7	3	15	1.21

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204