genome.fa.s26.2.7.7.80.10.50.1000.52.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Length:  60343961

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  52  of  204  ( 24404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15227133--15227176	19	2.5	19	85	10	58	65	9	2	22	1.32
15230902--15230945	22	2.0	23	86	4	63	36	0	2	61	1.09
15230932--15231101	38	4.7	36	70	19	113	41	1	6	50	1.35
15230892--15231105	106	2.0	106	96	0	392	40	0	5	53	1.30
15231084--15231118	18	2.0	17	88	5	52	45	0	0	54	0.99
15231275--15231371	45	2.2	45	83	9	119	34	26	5	34	1.79
15241158--15241223	13	5.5	13	74	20	72	48	9	0	42	1.35
15241158--15241230	23	3.2	23	92	1	121	49	8	0	42	1.32
15249238--15249280	13	3.5	13	75	18	56	48	13	0	37	1.43
15249238--15249289	23	2.3	23	96	0	95	50	13	0	36	1.42
15260121--15260208	40	2.2	41	83	4	115	28	2	11	57	1.45
15260195--15260355	68	2.4	68	82	4	173	19	9	11	59	1.58
15260255--15260355	34	3.0	34	94	0	175	17	7	10	63	1.50
15263793--15263832	20	2.0	21	90	5	64	37	0	0	62	0.95
15266927--15266978	16	3.2	16	94	0	86	28	0	36	34	1.58
15267201--15267235	18	2.0	18	88	5	54	54	0	0	45	0.99
15267338--15267379	15	2.7	16	82	14	52	52	2	0	45	1.13
15267347--15267388	15	2.9	15	82	10	52	52	0	0	47	1.00
15267108--15267404	157	1.9	157	96	0	549	45	2	4	47	1.37
15267341--15267633	120	2.4	121	94	1	509	49	4	3	42	1.38
15267457--15267508	15	3.6	15	80	12	56	53	1	0	44	1.11
15267615--15267781	47	3.6	46	71	12	146	47	4	2	45	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15267674--15267745	28	2.6	28	84	8	85	51	4	0	44	1.20
15267913--15267957	22	2.0	22	100	0	90	42	13	0	44	1.43
15279813--15279955	45	3.2	45	85	1	207	22	20	23	33	1.97
15279860--15279928	23	3.1	21	67	18	50	26	23	18	31	1.97
15279852--15279919	22	3.0	22	66	19	59	27	20	19	32	1.97
15284239--15284355	42	2.8	42	88	3	166	28	17	24	29	1.97
15284237--15284391	84	1.9	83	81	9	190	29	16	25	29	1.96
15284239--15284391	42	3.7	42	80	11	156	29	15	25	29	1.96
15286293--15286327	17	2.1	17	89	10	54	42	0	14	42	1.45
15286998--15287084	20	4.4	20	73	7	79	10	26	21	41	1.85
15287001--15287057	19	2.9	20	78	5	62	8	24	21	45	1.80
15301590--15301631	19	2.2	19	95	0	75	16	19	14	50	1.79
15310579--15310619	6	6.5	6	89	10	64	14	19	0	65	1.26
15313680--15313741	20	3.0	20	71	13	63	16	30	19	33	1.94
15313666--15313770	21	5.1	21	67	13	83	20	32	17	29	1.96
15313666--15313797	41	3.2	41	89	1	194	21	30	17	30	1.96
15321135--15321263	61	2.1	61	100	0	258	38	22	6	31	1.81
15321762--15321840	39	2.0	39	100	0	158	30	25	7	36	1.84
15323483--15323508	13	2.0	13	100	0	52	23	7	15	53	1.67
15326139--15326173	15	2.4	15	90	4	54	48	0	8	42	1.33
15330830--15330954	62	2.0	63	84	7	166	27	30	19	23	1.98
15342410--15342509	51	2.0	51	86	4	139	25	27	3	45	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15342386--15342485	11	9.4	11	64	17	50	23	30	3	44	1.68
15346599--15346646	25	1.9	25	91	0	78	43	0	18	37	1.51
15346649--15346685	9	4.2	9	96	3	67	29	0	10	59	1.31
15346716--15347216	23	22.6	23	86	6	655	47	26	0	25	1.52
15346716--15347216	44	11.3	44	88	5	585	47	26	0	25	1.52
15346712--15347216	67	7.6	65	89	4	683	47	26	0	25	1.52
15350230--15350482	125	2.0	126	87	2	366	32	22	14	30	1.94
15359165--15359269	9	11.1	9	70	13	68	60	0	0	38	1.03
15359165--15359291	10	12.9	10	70	21	74	59	0	2	37	1.10
15359222--15359262	17	2.3	18	91	4	66	63	0	0	36	0.95
15360181--15360241	21	2.9	20	76	11	68	44	1	3	50	1.28
15360207--15360262	24	2.4	23	84	3	67	44	3	0	51	1.18
15361253--15361295	19	2.4	19	88	7	63	37	13	11	37	1.82
15361261--15361297	19	1.9	19	100	0	74	37	10	16	35	1.83
15361261--15361320	19	2.8	22	82	9	54	38	6	16	38	1.75
15362005--15362051	24	2.0	24	83	8	60	34	6	0	59	1.23
15364987--15365168	28	6.5	28	95	0	303	33	28	12	25	1.92
15376795--15376870	40	1.9	40	94	0	134	26	19	22	31	1.98
15377629--15377664	17	2.1	17	89	0	54	16	11	5	66	1.40
15378405--15378454	23	2.2	23	86	13	68	18	8	24	50	1.73
15379647--15379848	25	8.2	25	76	14	197	49	5	7	37	1.55
15379640--15379822	48	3.8	48	97	0	339	49	6	7	36	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15379640--15379861	96	2.3	95	86	6	281	49	5	7	37	1.55
15383422--15383629	92	2.3	92	85	5	271	45	4	3	46	1.41
15383558--15383605	26	1.9	25	84	16	64	45	0	2	52	1.12
15383656--15383844	59	3.2	59	71	19	201	42	4	3	49	1.40
15383645--15384053	120	3.4	120	96	2	718	43	2	4	49	1.38
15383766--15383800	18	2.0	17	88	5	52	45	0	0	54	0.99
15383890--15383941	15	3.6	15	80	12	56	44	0	1	53	1.11
15384018--15384059	15	2.7	16	82	14	52	45	0	2	52	1.13
15384009--15384050	15	2.9	15	82	10	52	47	0	0	52	1.00
15383994--15384232	75	3.1	75	63	16	189	46	3	3	46	1.35
15383993--15384309	157	2.0	157	97	0	598	47	4	3	44	1.40
15384162--15384196	18	2.0	17	88	5	52	45	0	0	54	0.99
15384344--15384448	44	2.5	40	76	15	113	31	29	4	34	1.78
15384342--15384451	45	2.6	44	81	8	131	31	29	5	33	1.80
15384430--15384467	16	2.4	16	90	0	58	34	34	0	31	1.58
15386398--15386562	89	1.9	89	83	5	217	43	12	12	32	1.79
15386899--15386956	22	2.6	22	83	8	64	27	1	3	67	1.17
15389686--15389790	32	3.2	32	64	15	86	27	10	5	56	1.56
15389621--15389848	66	3.4	67	95	2	397	27	11	5	55	1.57
15390343--15390488	78	1.9	78	81	8	181	26	25	26	22	2.00
15392177--15392217	19	2.2	19	100	0	82	48	14	0	36	1.44
15394955--15395092	27	5.1	27	86	5	181	34	16	21	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15394966--15395111	27	5.5	28	84	9	173	32	15	25	26	1.96
15395133--15395215	24	3.5	23	74	9	69	20	4	25	49	1.68
15395359--15395607	32	7.8	32	80	5	209	20	21	22	35	1.96
15395359--15395629	64	4.2	63	83	3	251	20	21	22	36	1.96
15395358--15395607	96	2.6	96	80	4	272	20	22	22	35	1.96
15395390--15395656	32	8.4	32	78	2	189	20	20	21	36	1.95
15395458--15395657	96	2.1	95	85	0	265	19	21	22	37	1.95
15396753--15396826	36	2.1	36	89	0	112	39	18	20	21	1.93
15397475--15397524	25	2.0	25	100	0	100	36	12	20	32	1.89
15418285--15418339	24	2.2	25	87	3	76	45	16	18	20	1.86
15435296--15436751	44	33.6	44	66	14	408	28	19	24	27	1.99
15435228--15436407	218	5.4	217	91	0	1869	27	18	25	28	1.98
15435643--15435804	89	1.8	88	81	6	202	27	17	24	30	1.97
15436402--15436713	127	2.4	128	86	4	434	33	21	20	23	1.97
15443521--15443565	24	1.9	23	86	4	63	35	15	0	48	1.45
15448112--15448138	5	5.4	5	100	0	54	22	0	0	77	0.76
15448706--15448754	4	12.2	4	100	0	98	24	0	24	51	1.49
15455626--15455879	127	2.0	127	96	0	463	48	14	20	16	1.80
15463670--15463806	40	3.6	39	71	11	131	29	23	23	23	1.99
15463664--15463989	75	4.4	74	75	8	299	31	22	22	24	1.98
15463718--15463819	40	2.8	35	66	13	87	29	22	22	25	1.99
15467323--15467497	40	4.4	40	88	0	260	32	17	30	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15467400--15467465	20	3.3	20	64	8	53	28	18	33	19	1.95
15473897--15474134	39	6.0	40	81	4	277	33	17	28	21	1.96
15473897--15474134	79	3.0	79	82	4	257	33	17	28	21	1.96
15473907--15474132	118	1.9	118	89	1	355	33	17	28	20	1.95
15476269--15476368	43	2.3	45	78	13	120	38	24	17	21	1.93
15476421--15476543	42	2.9	42	78	6	124	40	18	17	23	1.91
15479712--15479947	120	2.0	122	82	6	297	39	7	10	42	1.67
15484572--15484629	27	2.1	27	100	0	116	48	20	15	15	1.81
15490080--15490120	7	5.9	7	94	0	55	39	29	0	31	1.57
15497174--15497236	22	2.6	24	78	21	69	44	1	4	49	1.33

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204