genome.fa.s26.2.7.7.80.10.50.1000.60.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Length:  60343961

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  60  of  204  ( 24404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17720870--17720921	15	3.2	15	75	19	59	40	0	1	57	1.10
17720870--17720920	17	3.0	17	73	21	61	41	0	1	56	1.10
17720968--17720998	16	2.0	16	93	6	55	38	0	0	61	0.96
17721012--17721069	29	2.0	30	86	3	82	50	0	1	48	1.11
17723166--17723246	27	2.9	26	82	10	90	60	3	1	34	1.22
17723170--17723246	10	8.4	9	73	18	61	59	2	1	36	1.19
17723180--17723241	18	3.3	18	80	13	63	64	1	1	32	1.13
17723250--17723292	20	2.1	21	86	4	61	65	0	2	32	1.06
17723754--17724003	9	26.8	9	66	15	80	34	1	2	61	1.18
17723754--17723911	19	8.3	19	71	16	87	34	1	3	61	1.20
17723758--17723826	29	2.5	28	79	9	79	31	1	4	62	1.24
17723762--17723961	19	10.5	19	68	18	80	35	1	2	60	1.19
17723764--17723848	37	2.2	37	81	8	100	32	2	3	61	1.26
17723863--17723966	27	3.9	27	75	16	92	31	0	1	65	1.10
17723861--17723975	28	4.2	26	76	9	95	31	0	2	65	1.12
17723971--17724013	20	2.2	20	87	8	61	37	2	0	60	1.10
17731685--17731722	17	2.2	17	86	9	51	34	7	0	57	1.28
17735480--17735543	21	3.0	22	72	9	69	35	23	20	20	1.96
17738028--17738148	57	2.1	59	86	9	167	32	19	23	24	1.97
17738236--17738367	67	2.0	67	92	0	219	21	18	31	28	1.97
17740047--17740077	7	4.4	7	95	0	53	0	16	0	83	0.64
17742400--17742560	82	2.0	82	86	2	225	34	14	24	26	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17744026--17744070	12	3.7	12	88	5	63	77	6	2	13	1.05
17744128--17744172	17	2.6	18	85	7	65	68	4	11	15	1.34
17745072--17745130	21	2.8	21	84	5	66	69	0	23	6	1.12
17745169--17745231	12	5.2	12	75	21	60	68	0	20	11	1.20
17747291--17747491	56	3.6	56	80	8	160	34	10	17	36	1.85
17747350--17747510	56	2.9	56	89	2	227	34	11	16	37	1.85
17747614--17748057	69	6.4	69	76	4	252	20	21	24	33	1.97
17756178--17756212	17	2.1	17	89	5	54	2	11	22	62	1.41
17759996--17760034	19	2.0	20	85	14	55	51	7	12	28	1.67
17761172--17761213	17	2.4	18	88	11	70	33	4	21	40	1.74
17761769--17761808	21	1.9	21	84	0	53	72	0	20	7	1.08
17761908--17761948	20	2.0	21	85	4	57	31	4	0	63	1.15
17768265--17768314	24	2.1	24	100	0	100	20	20	4	56	1.58
17768732--17768761	2	15.0	2	92	0	51	0	46	0	53	1.00
17771435--17771463	7	4.1	7	100	0	58	0	0	13	86	0.58
17778401--17778457	20	2.8	22	75	21	61	47	26	0	26	1.52
17778463--17778507	21	2.1	21	84	8	56	46	22	4	26	1.70
17780846--17780931	25	3.3	27	63	21	74	18	17	10	53	1.71
17782119--17782179	28	2.2	28	85	11	81	14	21	19	44	1.86
17787301--17787332	6	5.3	6	100	0	64	81	0	0	18	0.70
17793511--17793543	16	2.1	16	100	0	66	45	6	6	42	1.53
17793727--17793759	17	2.0	17	88	5	50	60	0	0	39	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17795404--17795444	8	5.1	8	84	0	55	68	0	4	26	1.10
17797361--17798375	94	10.8	94	83	2	1038	25	20	19	35	1.96
17797467--17798182	50	15.2	49	63	22	142	25	20	18	34	1.96
17803371--17803410	14	2.7	15	92	7	64	47	2	20	30	1.63
17805302--17805524	104	2.2	103	92	2	367	17	18	31	31	1.95
17805444--17805594	71	2.1	72	91	2	243	23	16	29	30	1.96
17812852--17813074	104	2.2	103	93	2	376	17	19	31	31	1.95
17812993--17813144	71	2.1	72	92	1	252	23	17	29	30	1.97
17815550--17815593	19	2.5	18	85	10	56	68	0	4	27	1.09
17818364--17818413	20	2.5	20	81	12	59	58	2	2	38	1.21
17818380--17818413	17	2.0	17	88	11	52	52	0	2	44	1.16
17818761--17818792	14	2.1	16	88	11	50	40	0	12	46	1.42
17819927--17819971	8	5.4	8	82	10	54	80	2	0	17	0.82
17822449--17822858	141	3.0	135	82	6	511	41	23	16	18	1.89
17822446--17822861	135	3.0	135	82	6	523	41	23	16	18	1.89
17838436--17838463	12	2.3	12	100	0	56	60	0	10	28	1.30
17839870--17839927	21	2.8	20	84	10	80	31	15	25	27	1.96
17843084--17843194	45	2.4	45	85	4	134	36	18	20	24	1.95
17843432--17843506	39	1.9	39	83	0	96	37	17	17	28	1.92
17844218--17844265	12	4.1	11	79	10	51	75	0	18	6	1.01
17844218--17844266	18	2.7	18	84	9	64	73	0	20	6	1.04
17844221--17844259	6	6.3	6	88	5	51	76	0	17	5	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17844391--17844424	18	1.9	17	88	5	50	67	0	26	5	1.13
17848402--17848466	27	2.4	28	82	7	71	24	27	18	29	1.98
17855391--17855454	30	2.2	30	91	2	103	23	1	15	59	1.45
17861899--17861961	26	2.4	26	72	0	63	26	20	19	33	1.96
17874499--17874543	22	2.0	23	83	12	58	40	8	2	48	1.47
17882451--17882513	26	2.5	24	78	19	65	69	0	11	19	1.17
17886380--17886428	3	16.7	3	95	4	91	34	0	30	34	1.58
17895029--17895067	17	2.2	17	86	13	53	58	2	0	38	1.12
17895028--17895068	18	2.3	18	83	8	57	60	2	0	36	1.10
17895026--17895095	20	3.6	19	74	16	63	67	1	0	31	1.00
17895054--17895103	20	2.4	21	80	12	59	68	0	2	30	1.01
17895312--17895358	26	1.9	23	87	12	67	34	17	6	42	1.74
17915423--17915466	19	2.2	20	88	4	63	52	0	25	22	1.48
17918934--17919156	40	5.6	39	82	5	225	24	27	21	26	2.00
17918932--17919156	80	2.8	80	82	4	258	24	27	21	25	1.99
17926805--17927026	40	5.7	40	81	8	233	25	27	21	25	1.99
17926805--17927026	79	2.8	79	81	7	247	25	27	21	25	1.99
17926958--17927035	40	1.9	41	82	10	97	26	28	20	24	1.99
17935988--17936068	39	2.1	39	81	4	92	33	22	22	22	1.97
17936045--17936400	196	1.8	195	80	6	432	33	20	20	25	1.97
17936351--17936444	40	2.3	40	80	3	109	30	20	23	25	1.98
17936702--17936740	14	2.7	15	92	7	64	15	0	46	38	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17936732--17936770	14	2.8	14	80	0	51	23	0	20	56	1.42
17936659--17936843	57	3.2	57	74	10	164	23	0	31	44	1.53
17936754--17936812	22	2.7	22	76	5	66	27	0	32	40	1.56
17936764--17936877	21	5.3	22	75	12	85	21	0	39	38	1.54
17936845--17936875	14	2.2	14	94	0	53	16	0	51	32	1.44
17936722--17937019	142	2.1	142	86	2	411	22	0	34	41	1.57
17936920--17936970	14	3.6	14	74	12	50	19	0	39	41	1.52
17936850--17936971	57	2.1	57	76	0	127	22	0	36	40	1.60
17936718--17937107	135	2.8	137	81	8	400	22	1	34	41	1.62
17936718--17937067	142	2.5	139	76	10	354	23	1	34	41	1.62
17939962--17940026	28	2.3	27	80	12	78	32	6	13	47	1.68
17939940--17940087	66	2.2	66	90	0	224	34	3	11	50	1.55
17940070--17940120	23	2.2	22	79	6	57	37	0	7	54	1.29
17940445--17940566	18	6.7	18	72	12	106	48	16	0	35	1.46
17940486--17940566	9	8.9	9	80	8	92	45	18	0	35	1.50
17946427--17946782	173	2.1	173	87	3	502	25	15	26	31	1.96
17946427--17946763	43	7.8	43	90	2	487	25	15	27	31	1.96
17952174--17952276	54	1.9	54	95	0	188	38	24	20	16	1.92
17966683--17966708	8	3.2	8	100	0	52	11	11	0	76	1.01
17967076--17967177	27	3.8	27	92	0	159	31	25	12	30	1.93
17982801--17982961	45	3.6	45	87	3	191	32	26	16	24	1.96
17982801--17982965	90	1.8	90	84	5	226	32	26	15	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17982801--17982981	45	4.0	45	85	2	186	32	26	15	25	1.95
17987308--17987396	41	2.2	41	85	2	117	22	25	14	37	1.92
17989625--17989655	15	2.1	15	100	0	62	19	25	29	25	1.99
17994603--17994729	40	3.2	39	78	5	128	19	28	14	37	1.92
17994674--17994723	20	2.4	21	76	3	57	18	30	16	36	1.92
18000781--18000821	21	2.0	21	100	0	82	53	9	14	21	1.70
18002270--18002489	51	4.4	50	73	7	178	25	15	26	33	1.95
18002325--18002455	50	2.6	51	80	3	149	22	16	26	33	1.96
18009895--18010119	51	4.4	50	77	7	197	24	16	27	31	1.97
18009899--18010089	101	1.9	101	82	5	242	23	16	27	32	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204