genome.fa.s26.2.7.7.80.10.50.1000.124.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Length:  60343961

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  124  of  204  ( 24404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38542764--38542891	31	4.1	31	82	6	141	39	3	1	56	1.25
38544186--38544272	39	2.2	38	84	11	106	39	2	6	51	1.41
38553729--38553770	20	2.2	20	87	12	61	57	4	21	16	1.58
38554229--38554258	16	1.9	16	93	6	53	30	0	20	50	1.49
38560385--38560544	49	3.3	49	75	6	146	47	12	10	29	1.75
38560533--38560612	32	2.5	31	86	6	99	52	12	10	25	1.70
38564709--38565206	44	11.4	43	69	14	229	27	22	20	29	1.99
38564656--38565218	217	2.6	217	90	0	883	26	22	21	29	1.99
38565000--38565212	84	2.5	85	80	11	229	27	23	19	29	1.98
38578800--38578873	31	2.3	31	78	17	80	36	14	6	41	1.73
38578902--38578944	21	2.0	21	82	8	52	32	13	6	46	1.71
38580334--38580373	20	2.0	20	90	0	62	27	10	12	50	1.72
38580319--38580385	34	1.9	35	90	3	109	31	8	13	46	1.74
38580313--38580389	14	5.0	15	71	20	52	33	9	14	42	1.77
38581460--38581567	55	2.0	55	87	7	157	38	12	7	40	1.72
38588099--38588149	21	2.5	20	82	17	61	0	37	0	62	0.95
38591387--38591426	16	2.5	17	84	12	57	32	5	32	30	1.79
38592185--38592251	30	2.2	30	94	0	116	56	20	11	10	1.64
38594435--38594515	27	3.0	26	73	10	81	43	2	2	51	1.28
38595325--38595412	31	3.0	30	82	9	83	54	2	2	40	1.25
38596125--38596218	33	2.8	33	80	6	109	36	25	8	29	1.86
38597158--38597336	71	2.5	71	81	4	198	31	22	17	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38599744--38599784	21	1.9	22	85	14	59	73	0	0	26	0.84
38608812--38609107	84	3.5	84	97	0	556	35	25	16	21	1.95
38608767--38609107	42	8.1	42	81	8	406	35	26	17	21	1.95
38609112--38609192	26	3.2	26	64	28	64	34	29	13	22	1.92
38611642--38611673	12	2.6	13	85	14	50	28	43	21	6	1.77
38612988--38613073	10	9.0	10	66	23	51	52	1	0	46	1.08
38612970--38613075	34	3.2	33	81	10	144	53	0	0	44	1.13
38612991--38613093	32	3.2	31	77	13	109	55	0	0	43	1.06
38613083--38613205	30	4.2	28	72	14	90	40	0	2	56	1.12
38613105--38613157	16	3.5	16	71	21	51	30	0	0	69	0.88
38613143--38613194	26	2.0	25	82	10	61	50	0	1	48	1.12
38613394--38613461	16	4.3	15	75	17	57	30	22	1	45	1.61
38613394--38613461	32	2.1	32	83	0	82	30	22	1	45	1.61
38613924--38613975	15	3.2	15	73	19	50	46	0	0	53	1.00
38613937--38613973	19	1.9	19	88	0	56	51	0	0	48	1.00
38614008--38614032	13	1.9	13	100	0	50	48	0	0	52	1.00
38617486--38617518	6	5.5	6	100	0	66	18	18	33	30	1.94
38637539--38637625	27	3.1	27	75	15	70	58	1	3	36	1.22
38641633--38641659	6	4.5	6	100	0	54	0	18	48	33	1.49
38641625--38641659	18	1.9	18	88	0	52	2	20	45	31	1.65
38643497--38643525	8	3.6	8	100	0	58	44	0	27	27	1.54
38644126--38644274	33	4.5	33	88	1	228	26	20	22	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38644126--38644274	66	2.3	66	95	0	262	26	20	22	30	1.98
38655078--38655129	16	3.2	16	94	0	86	28	0	36	34	1.58
38655110--38655204	45	2.1	44	88	1	136	34	5	27	32	1.79
38655346--38655387	15	2.7	16	82	14	52	52	2	0	45	1.13
38655355--38655396	15	2.9	15	82	10	52	52	0	0	47	1.00
38655518--38655666	47	3.3	46	69	17	132	47	3	3	45	1.35
38659279--38659324	21	2.2	21	96	0	83	28	4	15	52	1.61
38669387--38669617	50	4.6	50	85	1	277	26	22	29	21	1.99
38677893--38678081	24	7.8	24	80	5	200	28	20	22	28	1.98
38677906--38678082	49	3.6	49	90	2	257	27	20	22	28	1.99
38680696--38680734	5	7.8	5	94	0	60	20	53	0	25	1.45
38680693--38680735	20	2.2	20	95	0	77	18	51	0	30	1.47
38683946--38684008	30	2.1	29	85	2	81	25	14	14	46	1.82
38687526--38687550	10	2.5	10	100	0	50	48	0	8	44	1.32
38687533--38687676	56	2.5	57	75	12	152	48	7	9	34	1.63
38687646--38687700	26	2.1	26	100	0	110	60	7	7	25	1.49
38687702--38688259	28	19.4	28	81	12	612	25	0	24	50	1.52
38687816--38688276	89	5.2	89	90	5	700	25	0	25	49	1.53
38687702--38688276	178	3.3	172	87	7	774	25	0	24	50	1.51
38688337--38688385	25	1.9	25	87	4	71	38	16	4	40	1.67
38688500--38688551	24	2.2	24	89	0	77	1	23	32	42	1.65
38688806--38688851	18	2.6	18	82	0	56	39	8	30	21	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38689496--38689525	7	4.4	7	95	4	53	60	10	0	30	1.30
38690538--38690601	30	2.1	31	91	2	103	64	0	0	35	0.94
38690595--38690671	40	1.9	40	84	7	102	42	0	24	32	1.55
38692241--38692267	11	2.5	11	100	0	54	81	0	0	18	0.69
38701887--38701929	5	8.0	5	80	14	50	18	4	0	76	0.95
38701887--38701931	17	2.7	17	82	3	56	20	4	0	75	0.97
38701887--38701931	11	4.1	11	80	8	56	20	4	0	75	0.97
38707670--38707748	41	1.9	41	84	5	106	22	37	18	20	1.94
38709719--38709753	15	2.2	16	90	5	54	31	8	0	60	1.27
38715798--38715861	32	2.0	32	100	0	128	37	18	3	40	1.67
38718001--38718154	50	3.1	50	79	1	175	24	18	27	29	1.98
38718590--38718967	44	8.8	44	72	13	223	29	20	21	27	1.98
38718720--38719007	44	6.6	44	73	14	176	30	21	21	26	1.98
38718720--38718918	89	2.2	88	80	7	208	30	20	22	27	1.98
38718723--38718967	133	1.9	127	80	9	278	31	21	22	25	1.98
38718590--38719004	217	1.9	217	86	2	584	30	20	21	27	1.98
38718809--38719061	128	2.0	128	82	6	316	30	22	20	26	1.98
38720335--38720394	6	9.8	6	94	3	102	31	15	0	53	1.42
38720819--38720844	4	6.5	4	100	0	52	26	0	0	73	0.84
38721051--38721088	13	2.8	14	80	19	53	21	7	5	65	1.38
38721954--38722005	27	1.9	27	96	0	95	40	13	9	36	1.77
38723131--38723174	20	2.2	20	91	0	70	18	15	18	47	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38724851--38724973	62	2.0	62	96	0	228	21	18	13	46	1.84
38725543--38725674	40	3.3	40	83	6	187	16	28	18	36	1.93
38725543--38725605	20	3.2	20	69	0	63	14	26	20	38	1.91
38728958--38729155	42	4.7	42	77	7	188	36	23	13	26	1.92
38728985--38729146	85	1.9	84	84	3	218	36	24	14	24	1.93
38729195--38729238	19	2.2	20	84	4	54	27	25	0	47	1.52
38729691--38729724	17	2.0	17	100	0	68	29	17	17	35	1.93
38730690--38730752	32	2.0	32	90	0	99	28	4	15	50	1.64
38730998--38731079	37	2.2	37	83	10	105	35	8	8	47	1.65
38736109--38736174	32	2.1	32	100	0	132	30	6	22	40	1.78
38738421--38738499	38	2.1	38	100	0	158	39	2	15	43	1.60
38746496--38746583	27	3.3	27	87	3	124	40	18	17	23	1.90
38746548--38746619	27	2.7	27	86	0	90	37	16	23	22	1.94
38749276--38749592	47	6.6	47	88	4	454	31	11	29	26	1.92
38749251--38749592	94	3.6	98	88	5	502	31	11	29	26	1.92
38749402--38749476	23	3.2	23	62	23	57	29	10	32	28	1.90
38749276--38749592	147	2.2	141	90	3	490	31	11	29	26	1.92
38749566--38749656	46	2.0	46	86	0	128	32	8	31	26	1.87
38749251--38749641	147	2.7	140	84	7	412	32	11	29	26	1.91
38749801--38749945	37	3.9	37	96	0	254	24	19	31	25	1.98
38750821--38750929	24	4.5	24	82	4	94	26	8	20	44	1.79
38750998--38751054	27	2.1	27	81	12	64	22	26	19	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38751101--38751239	32	4.4	32	89	0	190	20	20	20	38	1.94
38751231--38751304	22	3.3	21	77	5	67	16	18	20	44	1.87
38752209--38752239	9	3.4	9	100	0	62	58	0	19	22	1.40
38753075--38753261	101	1.8	102	88	3	288	24	16	26	33	1.96
38753070--38753261	51	3.8	50	81	6	203	25	15	26	32	1.95
38762383--38762425	21	2.0	21	81	0	50	51	16	0	32	1.45
38769463--38769606	43	3.3	43	84	3	173	25	33	18	22	1.97
38769634--38769839	44	4.7	43	81	2	214	23	28	20	26	1.99
38769499--38769709	109	1.9	108	83	6	266	25	32	19	22	1.97
38769644--38769839	87	2.3	87	81	3	234	25	28	20	26	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204