genome.fa.s26.2.7.7.80.10.50.1000.115.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Length:  60343961

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  115  of  204  ( 24404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35717045--35717093	18	2.7	18	93	0	80	14	28	0	57	1.38
35720490--35720536	25	1.9	25	82	4	60	14	23	21	40	1.90
35720642--35720750	24	4.5	24	70	15	71	18	22	20	38	1.93
35720644--35720757	49	2.3	47	79	8	113	20	22	20	36	1.95
35733891--35733980	38	2.4	36	78	10	99	30	25	21	23	1.99
35744273--35744375	30	3.4	30	93	2	172	41	0	23	34	1.55
35747139--35747196	30	1.9	30	100	0	116	25	13	20	39	1.90
35748641--35748671	13	2.4	13	94	0	53	35	0	58	6	1.24
35748634--35748689	18	3.4	18	74	20	59	39	0	57	3	1.16
35752275--35752328	28	2.0	27	85	3	72	48	35	3	12	1.60
35758072--35758117	19	2.4	19	85	3	56	54	0	2	43	1.12
35758081--35758159	30	2.6	31	86	5	110	50	0	0	49	1.00
35758053--35758215	20	8.1	20	68	14	61	53	0	4	41	1.25
35758106--35758195	32	3.0	29	69	20	67	51	1	1	46	1.15
35759276--35759301	5	5.2	5	100	0	52	0	38	19	42	1.51
35760232--35760276	23	1.9	24	86	4	65	55	2	6	35	1.38
35760394--35760466	28	2.5	28	78	10	67	32	1	1	64	1.11
35760393--35760466	20	3.8	20	73	10	71	32	1	1	64	1.10
35760447--35760484	15	2.4	16	82	8	51	36	0	2	60	1.11
35760525--35760604	16	4.9	17	76	13	78	33	1	1	63	1.10
35760536--35760604	8	8.5	8	82	7	68	33	1	0	65	1.02
35760525--35760608	24	3.4	25	77	9	84	35	1	1	61	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35761339--35761515	91	1.9	91	83	0	228	25	22	29	22	1.99
35763357--35763969	307	2.0	307	98	0	1172	35	21	18	24	1.95
35772121--35772390	51	5.3	51	93	0	450	34	15	21	28	1.94
35773827--35773876	21	2.5	20	81	15	59	40	6	10	44	1.63
35777399--35777433	15	2.3	15	95	0	61	65	11	0	22	1.24
35777675--35777712	18	2.1	19	90	5	60	42	0	13	44	1.43
35777793--35777835	22	2.0	21	95	4	77	55	4	4	34	1.41
35777793--35777849	22	2.6	21	86	5	60	54	3	5	36	1.40
35777842--35777887	22	2.1	21	84	11	58	76	6	0	17	1.00
35777846--35777886	20	2.0	20	86	9	57	75	7	0	17	1.02
35780279--35780346	34	2.0	35	85	2	93	57	0	2	39	1.14
35780477--35780516	20	2.1	19	86	9	55	50	5	0	45	1.23
35780740--35780775	18	2.0	18	100	0	72	55	22	5	16	1.62
35781077--35781123	3	16.0	3	95	4	87	68	0	31	0	0.90
35782136--35782160	12	2.1	12	100	0	50	24	20	0	56	1.43
35786259--35786306	22	2.2	22	92	0	78	31	31	0	37	1.58
35786278--35786336	30	2.0	30	90	6	93	30	37	0	32	1.58
35786259--35786358	52	1.9	51	85	2	137	34	32	0	34	1.58
35786308--35786349	22	1.9	22	90	0	66	33	33	0	33	1.58
35786392--35786448	30	1.9	30	89	7	89	35	0	1	63	1.05
35786547--35786580	15	2.3	15	90	5	52	26	0	5	67	1.13
35788735--35788823	23	3.9	23	92	0	151	46	23	0	30	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35788735--35788823	46	1.9	46	97	0	169	46	23	0	30	1.53
35789410--35789533	56	2.1	57	82	5	142	49	4	0	45	1.26
35800221--35800383	63	2.6	64	77	6	179	28	26	17	26	1.98
35813815--35813894	34	2.4	34	86	0	115	47	20	7	25	1.75
35822842--35822886	22	2.0	22	95	0	81	37	0	37	24	1.56
35828731--35828762	16	2.0	16	93	0	55	46	0	0	53	1.00
35832095--35832125	2	15.5	2	100	0	62	51	0	0	48	1.00
35838950--35839021	10	7.1	10	71	7	56	79	4	2	13	1.00
35838950--35839031	12	7.2	11	74	12	67	79	3	3	13	1.00
35838976--35839032	25	2.2	27	81	6	73	80	3	3	12	0.96
35838989--35839031	17	2.5	17	85	14	61	83	0	4	11	0.78
35839731--35839756	12	2.2	12	100	0	52	23	0	0	76	0.78
35848906--35848933	14	2.0	14	100	0	56	35	14	21	28	1.92
35849553--35849600	22	2.0	24	84	11	64	50	2	8	39	1.44
35849703--35849754	20	2.7	18	82	14	59	44	7	11	36	1.70
35849703--35849763	20	3.1	18	76	21	52	40	8	11	39	1.71
35852456--35852551	41	2.3	41	85	1	129	33	23	18	23	1.97
35864154--35864184	10	3.2	10	90	9	55	83	0	16	0	0.64
35864152--35864194	19	2.3	18	92	4	68	83	0	13	2	0.74
35865431--35865652	45	5.0	45	73	6	191	28	22	23	24	1.99
35865431--35865657	89	2.6	89	87	0	319	29	22	23	24	1.99
35865819--35866042	115	1.9	115	82	5	274	34	20	20	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35867511--35867538	6	4.7	6	100	0	56	28	0	0	71	0.86
35867502--35867570	35	2.0	34	83	16	88	28	0	0	71	0.87
35867594--35867639	8	6.1	8	82	12	53	30	0	0	69	0.89
35868025--35868066	13	3.2	13	80	9	50	38	9	7	45	1.64
35868403--35868469	35	1.9	35	93	0	116	46	10	5	37	1.63
35870532--35870569	18	2.1	18	90	0	58	42	2	31	23	1.68
35875874--35876065	28	6.9	28	95	0	332	27	10	27	34	1.90
35878061--35878184	43	2.9	43	86	0	158	26	20	23	29	1.98
35887933--35887997	30	2.2	30	88	5	96	18	21	38	21	1.93
35893728--35893766	18	2.2	18	90	4	62	48	12	0	38	1.42
35903941--35904014	24	3.0	24	80	16	89	22	28	16	32	1.96
35903949--35904035	25	3.5	25	79	13	90	24	26	18	31	1.98
35911015--35911812	134	6.0	134	80	3	809	35	14	17	32	1.90
35934480--35934515	18	2.0	18	88	0	54	63	0	16	19	1.30
35940189--35940219	7	4.6	7	96	4	55	16	9	0	74	1.07
35944262--35944332	25	2.8	25	82	4	81	19	29	18	32	1.96
35944270--35944333	25	2.5	26	82	7	87	21	28	18	31	1.97
35950640--35950703	23	2.8	23	83	9	87	18	25	20	35	1.95
35950640--35950720	23	3.6	22	78	6	74	20	23	19	35	1.96
35951869--35951893	13	1.9	13	100	0	50	48	0	16	36	1.46
35952508--35952553	7	6.6	7	92	7	76	39	2	0	58	1.10
35952738--35952797	31	1.9	31	86	0	84	40	13	18	28	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35952751--35952811	31	2.0	31	83	6	79	39	18	16	26	1.91
35958929--35958971	18	2.5	17	85	7	52	46	4	0	48	1.22
35962329--35962382	20	2.7	20	80	8	65	40	1	14	42	1.57
35967575--35967613	19	2.1	19	85	9	53	17	7	2	71	1.21
35967902--35967954	24	2.2	24	83	6	63	24	1	1	71	1.06
35980704--35980753	26	1.9	26	87	0	73	46	0	2	52	1.12
35980828--35980964	28	5.0	26	65	15	71	40	0	3	55	1.23
35980828--35980868	13	3.2	13	80	12	50	39	0	0	60	0.96
35980886--35980920	18	2.0	17	88	5	52	40	2	2	54	1.30
35981110--35981179	16	4.4	16	90	0	104	25	32	2	38	1.71
35986149--35986246	28	3.6	26	86	9	133	31	12	26	29	1.92
35987233--35987520	47	6.1	47	87	2	348	25	13	17	44	1.84
35987443--35987520	23	3.4	22	74	11	68	24	15	17	42	1.88
35988502--35988646	47	3.1	47	69	16	122	44	2	4	48	1.33
35988483--35988690	91	2.3	91	89	0	317	45	3	3	47	1.37
35988605--35988665	28	2.2	28	85	5	81	45	0	3	50	1.17
35988523--35988665	44	3.2	43	69	20	121	46	2	3	48	1.31
35988717--35989145	66	7.2	57	64	21	184	41	2	5	50	1.38
35988706--35989238	120	4.4	120	96	1	937	41	2	5	50	1.38
35988831--35988882	15	3.6	15	80	12	56	44	0	1	53	1.11
35989200--35989241	15	2.7	16	82	14	52	45	0	2	52	1.13
35989191--35989232	15	2.9	15	82	10	52	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35989455--35989508	16	3.4	16	84	0	72	25	33	3	37	1.74
35993013--35993042	13	2.3	13	94	0	51	50	6	13	30	1.67
35994529--35994714	59	3.1	58	70	14	189	40	1	6	51	1.37
35994603--35994637	18	2.0	18	94	5	63	42	0	0	57	0.99
35994610--35994655	18	2.8	17	83	9	51	45	0	0	54	0.99
35994622--35994678	26	2.2	25	81	3	69	40	0	3	56	1.17
35994526--35994772	120	2.0	121	95	0	442	40	1	5	52	1.32
35994725--35994760	18	2.0	18	100	0	72	33	0	0	66	0.92
35994729--35994768	18	2.2	18	86	0	53	42	0	0	57	0.98
35994918--35995012	45	2.1	44	86	1	127	34	27	6	31	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204