genome.fa.s26.2.7.7.80.10.50.1000.22.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Length:  60343961

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  22  of  204  ( 24404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6372559--6372720	23	6.9	23	84	4	164	44	5	27	22	1.75
6378207--6378240	16	2.1	16	100	0	68	41	5	20	32	1.76
6378210--6378253	16	2.8	16	89	0	61	45	4	13	36	1.64
6378576--6378699	50	2.5	50	90	0	185	24	25	15	35	1.94
6378576--6378712	25	5.5	25	84	1	168	24	25	16	33	1.95
6383548--6383572	6	4.2	6	100	0	50	32	16	0	52	1.44
6384883--6384935	27	2.0	26	81	3	61	49	1	3	45	1.31
6386176--6386265	37	2.5	37	85	7	116	35	25	10	28	1.88
6386481--6386685	41	5.0	41	95	0	374	22	28	20	28	1.99
6386912--6386955	17	2.7	17	89	6	65	43	18	2	36	1.63
6389298--6389343	3	15.3	3	100	0	92	34	0	0	65	0.93
6390405--6390550	37	4.0	37	93	1	242	24	21	16	36	1.94
6390514--6390736	52	4.6	46	88	7	275	27	22	14	35	1.93
6390557--6390730	52	3.3	52	93	1	285	27	22	13	36	1.92
6393861--6394055	49	4.0	49	93	0	309	31	29	14	24	1.95
6395313--6395464	37	3.9	37	81	13	173	26	21	15	36	1.94
6395381--6395603	52	4.6	46	89	7	284	27	22	14	35	1.93
6395424--6395597	52	3.3	52	93	1	285	26	22	14	36	1.93
6400419--6400647	37	6.0	37	84	8	298	37	14	20	27	1.91
6400381--6400686	118	2.6	118	76	18	344	36	14	21	27	1.92
6408156--6408385	37	6.0	37	84	7	298	37	14	20	27	1.92
6408156--6408386	82	3.0	75	88	8	347	37	14	20	27	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6408265--6408411	45	3.4	45	78	14	202	33	17	21	27	1.96
6408230--6408424	82	2.4	82	97	1	367	35	15	21	26	1.94
6415939--6415983	19	2.3	19	88	11	65	57	0	8	33	1.30
6415970--6416016	19	2.3	20	82	10	60	61	4	4	29	1.34
6415970--6416011	10	4.2	10	84	9	50	66	2	2	28	1.16
6416532--6416612	39	2.1	40	84	13	109	35	1	3	59	1.23
6416563--6416661	47	2.1	47	81	10	114	31	2	4	62	1.25
6416515--6416631	10	12.2	10	72	20	56	33	0	5	59	1.27
6423875--6423922	24	2.0	24	95	0	87	50	10	4	35	1.56
6426435--6426611	94	1.9	94	88	4	268	24	11	20	42	1.86
6426328--6426749	221	1.9	219	82	7	525	27	9	20	42	1.83
6426638--6426956	95	3.1	101	80	11	325	26	9	20	43	1.82
6426461--6427088	329	1.9	323	83	6	807	26	9	21	42	1.84
6426793--6427306	217	2.4	216	81	10	532	27	9	22	41	1.85
6430282--6430349	35	1.9	35	100	0	136	33	14	20	30	1.93
6432270--6432305	7	5.1	7	100	0	72	13	41	13	30	1.84
6433352--6433430	11	7.5	11	67	21	53	25	30	1	43	1.63
6433351--6433451	51	2.0	51	88	3	150	25	29	0	43	1.61
6435072--6435102	6	5.0	6	96	4	53	35	48	0	16	1.46
6435078--6435671	205	2.8	204	86	9	809	42	17	2	37	1.63
6435839--6435901	24	2.5	26	80	17	78	31	3	0	65	1.09
6435840--6435901	25	2.4	27	86	10	94	32	3	0	64	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6435840--6435911	26	2.8	26	85	10	87	29	4	2	63	1.27
6442080--6442114	14	2.5	14	90	0	52	34	17	5	42	1.73
6443292--6443326	14	2.5	14	95	0	61	45	2	5	45	1.41
6443269--6443436	62	2.7	62	96	0	309	49	10	5	35	1.59
6446408--6446443	18	1.9	19	88	5	56	44	16	8	30	1.77
6449410--6449449	3	13.3	3	100	0	80	67	0	0	32	0.91
6451576--6451626	26	2.0	26	100	0	102	41	3	3	50	1.39
6452747--6452771	8	3.1	8	100	0	50	52	0	0	48	1.00
6461696--6461742	22	2.1	21	84	7	58	70	2	8	19	1.24
6466072--6466162	37	2.5	37	83	1	112	41	31	10	15	1.82
6474897--6474923	4	6.8	4	100	0	54	22	0	0	77	0.76
6480332--6480376	3	15.0	3	85	0	63	28	4	0	66	1.11
6480578--6480606	13	2.3	13	94	5	51	17	0	13	68	1.20
6484517--6484598	26	3.2	26	82	0	92	40	3	21	34	1.71
6484517--6484598	13	6.3	13	73	0	74	40	3	21	34	1.71
6484623--6484679	27	2.2	25	84	6	69	43	5	17	33	1.71
6484631--6484688	25	2.2	27	84	6	75	39	1	18	39	1.61
6487690--6487745	13	4.3	13	93	0	85	32	10	21	35	1.88
6487673--6487745	39	1.9	37	88	5	110	28	10	23	36	1.89
6487914--6487989	29	2.7	26	78	17	73	46	1	2	50	1.24
6488331--6488374	22	2.0	21	91	4	70	40	4	13	40	1.65
6488358--6488428	22	3.2	22	63	21	58	38	7	12	42	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6488353--6488446	44	2.1	44	100	0	188	42	6	13	37	1.70
6496696--6496744	21	2.2	22	80	16	57	22	34	24	18	1.96
6503282--6503332	25	2.0	25	96	0	93	35	7	11	45	1.70
6503282--6503351	25	2.8	25	87	6	81	37	8	11	42	1.72
6503903--6503992	37	2.4	38	83	1	119	31	41	11	16	1.83
6508536--6508583	24	2.0	24	84	15	64	31	0	16	52	1.45
6515491--6515553	25	2.7	22	80	7	63	71	3	4	20	1.18
6515539--6515583	6	7.5	6	97	0	81	84	2	0	13	0.72
6517327--6517405	35	2.2	36	84	11	99	29	11	16	43	1.83
6518338--6518407	31	2.2	32	84	5	88	37	7	8	47	1.62
6518524--6518581	30	2.0	29	83	10	73	51	10	5	32	1.58
6522611--6522639	9	3.0	10	90	10	51	10	0	0	89	0.48
6524077--6524107	5	6.0	5	96	3	53	58	3	0	38	1.15
6525536--6525649	37	3.1	37	65	14	101	29	3	23	42	1.71
6525504--6525612	35	3.1	35	66	15	96	30	4	19	45	1.70
6525504--6525649	72	2.0	72	97	0	274	30	4	21	43	1.71
6538496--6538533	16	2.5	15	87	8	51	55	0	7	36	1.29
6541969--6542008	14	2.9	14	84	0	53	35	7	15	42	1.75
6541992--6542030	20	2.0	20	89	0	60	30	10	10	48	1.70
6541977--6542042	34	1.9	34	84	6	89	33	10	10	45	1.73
6543536--6543578	21	2.0	21	90	0	68	44	27	13	13	1.83
6543805--6544211	162	2.4	170	76	10	388	36	23	5	33	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6545984--6546016	12	2.5	13	90	9	50	39	0	9	51	1.34
6549502--6549652	33	4.6	34	72	12	129	19	23	12	44	1.85
6549837--6549962	51	2.5	51	83	5	157	27	26	10	34	1.89
6556782--6556849	28	2.4	27	80	9	73	32	1	7	58	1.34
6557387--6557426	21	1.9	21	100	0	80	37	10	5	47	1.59
6560955--6561038	44	1.9	44	82	4	107	41	1	2	54	1.21
6560872--6561359	117	4.3	117	89	8	794	41	1	3	52	1.30
6561086--6561222	17	8.0	17	66	20	72	40	1	2	55	1.24
6560989--6561332	103	3.2	103	90	7	496	40	1	3	53	1.29
6561117--6561156	20	2.0	21	85	5	55	35	0	5	60	1.19
6561076--6561131	29	1.9	29	89	7	87	41	1	0	57	1.09
6561130--6561325	59	3.3	59	71	16	197	40	2	4	53	1.32
6560881--6561332	220	2.1	221	97	1	856	41	1	3	53	1.29
6561306--6561339	17	2.0	17	100	0	68	41	0	0	58	0.98
6561306--6561353	15	3.0	15	81	9	51	41	2	0	56	1.11
6561486--6561593	46	2.5	43	84	11	134	36	29	3	30	1.75
6561503--6561594	46	2.0	44	89	4	139	39	28	4	28	1.76
6562797--6562873	38	2.0	38	87	5	111	40	16	9	33	1.81
6564376--6564428	26	2.0	26	96	0	97	54	5	0	39	1.24
6566813--6566932	43	2.8	43	79	9	127	31	30	19	18	1.95
6588612--6588643	16	2.0	16	93	0	55	15	3	0	81	0.82
6590942--6591117	3	58.3	3	72	12	96	63	1	6	28	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6595413--6595449	3	12.3	3	100	0	74	0	32	0	67	0.91
6595751--6595818	29	2.3	29	80	10	75	30	5	1	61	1.28
6605612--6605636	8	3.1	8	100	0	50	24	0	12	64	1.27
6608763--6608794	15	2.1	15	94	0	55	15	6	9	68	1.36
6613155--6613190	17	2.1	17	89	0	54	38	2	5	52	1.39
6613183--6613236	25	2.1	26	83	10	67	40	0	7	51	1.30
6613142--6613248	20	5.8	18	67	20	51	41	0	5	52	1.31
6613227--6613343	62	1.9	59	84	5	153	41	4	5	49	1.44
6616892--6616940	20	2.5	20	86	0	71	20	32	20	26	1.97
6616932--6617017	20	4.3	20	73	16	70	11	32	19	36	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204