genome.fa.s26.2.7.7.80.10.50.1000.111.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Length:  60343961

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  111  of  204  ( 24404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34516970--34517011	19	2.2	19	100	0	84	54	4	7	33	1.49
34526499--34526553	21	2.7	20	77	8	65	38	3	3	54	1.36
34530055--34530083	13	2.3	13	94	5	51	27	10	0	62	1.28
34531500--34531536	9	4.1	9	85	0	56	45	10	10	32	1.74
34531885--34531945	19	3.4	19	76	15	58	22	31	0	45	1.53
34532871--34532915	22	2.1	21	83	4	54	75	6	2	15	1.11
34537751--34537803	23	2.2	24	96	3	99	41	24	3	30	1.72
34538375--34538416	21	2.0	21	85	0	57	38	19	26	16	1.92
34546835--34546887	22	2.3	23	87	3	72	52	7	0	39	1.30
34548044--34548350	150	2.0	150	95	0	551	40	6	35	17	1.75
34548355--34548471	36	3.2	36	85	0	153	30	8	30	29	1.87
34550927--34550991	33	2.0	33	100	0	130	9	26	18	46	1.79
34550928--34550982	17	3.3	17	69	5	58	9	25	20	45	1.80
34556118--34556159	18	2.4	17	84	7	57	45	2	14	38	1.58
34558426--34558463	17	2.2	18	90	4	60	68	0	5	26	1.11
34558452--34558503	24	2.2	24	82	0	59	53	0	1	44	1.11
34558452--34558517	23	2.8	23	81	6	62	50	3	1	45	1.26
34561881--34561921	20	2.0	20	86	9	57	39	2	4	53	1.35
34562445--34562574	49	2.6	50	83	6	176	32	13	22	32	1.92
34562632--34562678	23	2.0	23	100	0	94	21	17	25	36	1.94
34569919--34569986	32	2.1	32	88	0	100	45	11	13	29	1.79
34571505--34571686	4	45.5	4	95	0	310	22	1	25	50	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34581093--34581363	125	2.2	124	89	4	420	29	14	22	33	1.94
34584518--34585068	29	18.5	29	83	7	624	33	1	21	43	1.61
34584537--34585068	179	2.9	179	87	3	721	33	1	22	43	1.62
34584863--34584970	36	3.1	36	93	2	175	32	0	25	40	1.62
34584934--34585059	28	4.5	26	87	5	83	30	0	23	44	1.59
34586232--34586256	7	3.6	7	100	0	50	60	12	0	28	1.32
34587214--34587247	15	2.3	15	90	5	52	67	5	0	26	1.13
34587345--34587402	29	2.0	28	90	9	91	58	1	0	39	1.08
34587434--34587486	22	2.4	21	87	9	79	32	0	32	35	1.58
34587439--34587538	52	1.9	52	89	0	155	37	0	32	31	1.58
34587491--34587546	22	2.5	22	97	2	103	41	0	30	28	1.57
34591461--34591617	42	3.7	42	74	1	136	17	23	15	43	1.87
34599076--34599232	42	3.8	41	77	5	154	15	22	16	45	1.85
34599094--34599150	21	2.7	21	76	10	62	19	19	15	45	1.85
34599140--34599209	21	3.3	21	71	0	68	12	22	18	45	1.83
34599135--34599237	21	4.9	20	67	7	62	13	23	19	43	1.86
34601525--34601771	50	4.8	50	77	8	187	23	26	21	28	1.99
34612068--34612112	22	2.0	22	100	0	90	44	0	13	42	1.43
34612290--34612500	54	3.6	56	69	20	146	42	3	3	51	1.35
34612339--34612537	66	3.2	62	68	19	164	41	4	5	49	1.43
34612426--34612587	15	10.9	15	67	21	58	43	2	3	50	1.31
34612301--34612590	120	2.4	120	94	1	492	43	3	3	50	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34612555--34612596	15	2.7	16	82	14	52	45	0	2	52	1.13
34612710--34612814	44	2.5	40	76	15	113	31	29	4	34	1.78
34612708--34612817	45	2.6	44	81	8	131	31	29	5	33	1.80
34612796--34612833	16	2.4	16	90	0	58	34	34	0	31	1.58
34613026--34613167	50	2.8	50	84	0	185	21	27	23	28	1.99
34615579--34615710	54	2.4	54	79	9	137	20	10	25	43	1.84
34619039--34619122	42	2.0	42	95	0	150	27	20	15	36	1.93
34619445--34619470	13	2.0	13	100	0	52	23	46	7	23	1.78
34623388--34623440	18	2.9	18	76	15	56	9	18	1	69	1.25
34636064--34636132	22	2.9	21	76	21	57	21	5	0	72	1.05
34636096--34636142	12	3.9	12	76	17	53	23	6	0	70	1.10
34636066--34636134	17	4.1	17	71	16	63	20	5	0	73	1.03
34636066--34636142	24	3.1	25	77	17	81	20	6	0	72	1.06
34636994--34637180	101	1.8	100	82	7	241	27	16	24	31	1.96
34637168--34637217	16	3.1	16	83	11	57	78	2	2	18	0.95
34644789--34645105	44	7.2	44	65	12	157	26	23	19	30	1.98
34644741--34645475	132	5.6	132	93	0	1245	26	23	20	30	1.98
34651646--34651691	24	1.9	24	86	0	65	13	26	15	45	1.82
34655546--34655585	16	2.5	16	83	0	53	75	12	0	12	1.06
34658361--34658396	15	2.5	14	86	8	54	44	0	11	44	1.39
34661693--34661778	13	6.5	13	70	16	52	45	2	20	31	1.64
34661726--34661776	14	3.8	14	74	7	52	43	1	21	33	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34661713--34661777	27	2.4	27	92	5	105	40	3	23	33	1.70
34661727--34661787	27	2.3	27	82	5	70	44	3	22	29	1.69
34665439--34665493	28	2.0	28	96	0	101	29	20	5	45	1.73
34674688--34674761	30	2.5	29	82	8	78	56	1	5	36	1.31
34674806--34674858	20	2.6	21	80	11	58	28	1	9	60	1.38
34674907--34674959	17	3.1	17	73	13	54	32	0	0	67	0.91
34676614--34676692	25	3.2	25	79	0	95	32	13	18	34	1.91
34679798--34680094	50	5.8	50	84	5	303	27	20	28	23	1.99
34682610--34682672	31	2.0	31	100	0	126	46	9	15	28	1.78
34687253--34687296	23	1.9	23	100	0	88	40	18	6	34	1.77
34688857--34688904	17	3.1	14	85	14	51	56	0	2	41	1.11
34689070--34689127	28	2.0	29	83	9	75	53	6	0	39	1.28
34700963--34701002	21	1.9	21	85	10	55	15	25	25	35	1.94
34705423--34705502	40	2.0	40	100	0	160	32	20	20	27	1.97
34705536--34705592	21	2.7	22	83	8	82	29	8	33	28	1.87
34705795--34705835	17	2.4	18	80	12	50	53	0	2	43	1.13
34709146--34709226	39	2.1	39	100	0	162	19	14	9	55	1.67
34709537--34710362	29	28.2	29	94	4	1437	37	10	0	51	1.38
34709537--34710362	59	14.1	58	94	3	1437	37	10	0	51	1.38
34709537--34710362	88	9.4	88	94	3	1429	37	10	0	51	1.38
34710408--34710496	44	2.0	44	87	6	128	10	50	3	35	1.53
34712306--34712381	21	3.7	21	94	3	129	36	11	14	36	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34712318--34712404	21	4.0	24	88	8	93	37	8	16	37	1.78
34712827--34712873	3	16.0	3	79	20	55	34	0	0	65	0.93
34712827--34712874	18	2.7	19	87	9	66	35	0	0	64	0.94
34719488--34719626	44	3.2	44	63	8	120	25	28	25	20	1.99
34719440--34719928	88	5.6	88	88	0	690	28	28	23	20	1.99
34719930--34720282	44	8.2	44	79	8	357	29	17	24	28	1.97
34719972--34720204	126	1.8	126	93	0	403	30	18	24	27	1.98
34719949--34720257	170	1.8	170	87	2	469	30	16	24	28	1.97
34720610--34720717	44	2.5	44	83	3	119	30	18	19	31	1.96
34721145--34721209	21	3.1	21	95	0	121	38	9	12	40	1.75
34721144--34721220	21	3.8	19	82	12	100	37	9	14	38	1.78
34721199--34721243	23	2.0	23	86	4	65	40	2	17	40	1.62
34721209--34721253	23	2.0	23	82	4	56	35	2	15	46	1.58
34721663--34721700	15	2.6	15	83	4	51	26	0	2	71	1.00
34721665--34721715	12	4.0	12	82	12	50	29	0	1	68	1.00
34721679--34721716	12	2.8	13	88	11	51	34	0	0	65	0.93
34723520--34723588	21	3.2	21	79	6	77	55	15	26	2	1.55
34723533--34723604	21	3.4	21	82	1	81	50	16	29	4	1.64
34731283--34731321	18	2.2	19	90	9	64	25	12	0	61	1.31
34737088--34737117	13	2.3	13	94	0	51	50	23	16	10	1.75
34743397--34743553	23	7.0	23	83	6	160	20	21	22	36	1.95
34743400--34743553	46	3.4	45	82	7	179	20	20	22	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34743397--34743555	69	2.4	67	84	5	196	20	20	22	36	1.95
34746212--34746268	28	2.0	28	86	6	80	54	12	8	24	1.65
34747565--34747605	19	2.3	17	87	8	55	17	7	0	75	1.02
34749575--34749610	18	2.0	18	88	0	54	27	0	8	63	1.23
34756392--34756457	28	2.3	29	84	10	82	51	1	10	36	1.46
34760083--34760116	12	2.8	12	86	4	50	23	0	8	67	1.18
34760291--34760331	14	2.7	15	88	7	57	26	4	2	65	1.25
34760320--34760353	10	3.2	10	88	12	50	38	0	0	61	0.96
34768378--34768411	14	2.4	14	85	0	50	52	5	8	32	1.56
34770135--34770179	22	2.1	22	95	4	83	28	4	8	57	1.48

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204