genome.fa.s26.2.7.7.80.10.50.1000.186.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Length:  60343961

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  186  of  204  ( 24404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55318289--55318317	15	1.9	15	100	0	58	48	0	17	34	1.47
55320657--55320694	20	1.9	20	84	10	51	55	7	2	34	1.43
55321630--55321729	51	2.0	51	86	4	139	44	2	27	27	1.65
55321689--55321743	11	4.9	11	75	20	60	41	0	30	27	1.56
55321689--55321743	22	2.5	22	83	16	69	41	0	30	27	1.56
55323135--55323187	28	1.9	27	88	3	79	58	16	9	15	1.62
55323197--55323294	47	2.1	47	94	0	169	26	23	18	31	1.97
55323844--55323942	27	3.8	24	88	10	92	63	1	0	35	1.01
55323880--55323932	11	5.4	11	75	25	64	60	0	0	39	0.97
55323874--55323938	27	2.4	27	97	2	121	64	0	0	35	0.94
55323890--55323921	16	2.0	16	100	0	64	62	0	0	37	0.95
55324716--55324790	36	2.0	38	84	5	100	41	0	0	58	0.98
55324752--55324811	26	2.3	26	85	5	77	35	0	1	63	1.05
55325009--55325063	29	1.9	28	85	10	76	36	1	1	60	1.18
55325034--55325078	22	2.0	23	86	4	65	48	0	2	48	1.13
55333220--55333284	25	2.6	26	100	0	116	40	6	7	46	1.58
55339338--55339440	42	2.5	41	81	13	106	20	14	19	45	1.85
55343742--55343867	42	3.0	42	79	6	139	39	20	22	17	1.92
55363126--55363192	28	2.4	28	76	18	68	46	0	4	49	1.22
55371029--55371067	19	2.0	20	85	14	55	25	0	2	71	0.98
55377505--55377546	18	2.3	18	87	0	57	28	11	21	38	1.89
55377514--55377546	9	3.7	9	95	0	57	27	12	24	36	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55389986--55390046	26	2.3	27	85	5	79	40	1	24	32	1.65
55392541--55392574	17	1.9	18	94	5	61	58	0	8	32	1.29
55396972--55397007	3	12.0	3	93	0	63	63	0	2	33	1.08
55398058--55398087	15	1.9	16	93	6	53	6	0	46	46	1.29
55398653--55399021	44	8.5	43	73	8	180	27	20	20	31	1.98
55398641--55398802	87	1.9	87	84	2	218	25	24	20	29	1.99
55398780--55399021	46	5.6	44	69	18	161	28	19	20	31	1.97
55411568--55411603	3	12.0	3	93	0	63	63	0	2	33	1.08
55412655--55412684	15	1.9	16	93	6	53	6	0	46	46	1.29
55414306--55414364	11	5.3	11	81	4	55	62	3	0	33	1.12
55414309--55414364	22	2.5	22	82	2	67	62	3	0	33	1.12
55416531--55416584	28	2.0	27	85	3	72	48	5	0	46	1.25
55416807--55416874	16	4.2	16	84	0	82	30	1	32	35	1.67
55417110--55417144	18	2.0	17	88	5	52	54	0	0	45	0.99
55416997--55417310	157	2.0	157	96	0	583	44	3	5	47	1.41
55417247--55417288	15	2.7	16	82	14	52	52	2	0	45	1.13
55417256--55417297	15	2.9	15	82	10	52	52	0	0	47	1.00
55425272--55425334	25	2.6	25	74	2	65	34	19	26	19	1.95
55427685--55427729	19	2.5	19	80	20	60	42	13	0	44	1.43
55438767--55438858	9	10.4	9	72	15	50	61	3	4	30	1.31
55438811--55438882	8	8.8	8	71	19	51	61	2	1	34	1.19
55438809--55438873	25	2.6	26	72	18	66	63	3	1	32	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55458355--55458395	20	2.0	20	90	0	64	29	12	21	36	1.90
55469589--55469635	20	2.3	20	79	13	53	57	4	4	34	1.38
55471155--55471438	44	6.4	44	72	7	191	27	23	19	29	1.98
55471143--55471304	87	1.9	87	84	2	218	25	24	20	29	1.99
55471188--55471487	44	6.8	43	73	8	160	26	24	20	29	1.99
55471194--55471438	134	1.8	135	81	4	307	26	24	20	28	1.99
55485191--55485231	20	2.0	20	90	0	64	29	12	21	36	1.90
55491666--55491716	23	2.3	22	90	6	77	49	0	0	50	1.00
55500257--55500302	23	2.0	24	82	4	58	30	32	13	23	1.93
55500330--55500398	27	2.5	27	77	15	70	60	0	1	37	1.06
55501384--55501430	10	4.5	10	78	19	51	65	2	2	29	1.15
55513754--55513816	10	6.4	10	78	21	71	28	1	0	69	0.97
55513722--55513848	40	3.2	38	83	7	155	30	2	0	66	1.04
55513782--55513839	12	5.5	11	74	19	52	36	3	0	60	1.14
55513743--55513866	40	3.0	41	89	4	169	33	2	0	62	1.14
55517171--55517256	42	2.0	42	100	0	172	22	15	13	48	1.79
55518963--55519331	30	12.0	30	87	4	308	25	21	23	28	1.99
55518990--55519181	15	12.8	15	67	8	86	26	22	23	27	2.00
55519164--55519218	18	3.2	18	70	15	62	29	14	23	32	1.94
55519128--55519310	33	5.7	33	87	5	243	26	18	24	31	1.97
55519011--55519310	96	3.2	96	81	2	303	26	21	24	29	1.99
55519227--55519276	15	3.3	15	80	0	64	28	20	22	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55525721--55525758	20	1.9	20	84	10	51	44	0	2	52	1.14
55525720--55525758	21	1.9	20	89	5	60	43	0	2	53	1.14
55534647--55534689	19	2.3	18	80	4	50	44	9	0	46	1.35
55536206--55536248	21	2.0	21	86	4	59	27	0	4	67	1.10
55537686--55537783	22	4.8	21	71	17	80	25	12	29	32	1.92
55537963--55538032	29	2.4	29	97	2	133	38	5	14	41	1.69
55545460--55545486	6	4.5	6	100	0	54	0	33	14	51	1.43
55566899--55566951	20	2.6	20	81	3	61	33	5	7	52	1.53
55566972--55567324	161	2.2	162	86	5	493	33	15	15	35	1.89
55567947--55570032	415	5.0	415	85	4	2594	39	12	13	33	1.83
55567965--55570032	835	2.5	828	84	6	2617	39	12	13	33	1.83
55572461--55573965	414	3.6	412	85	4	2006	40	12	13	33	1.81
55574532--55574594	30	2.1	30	93	0	108	58	11	3	26	1.47
55577003--55579901	822	3.5	810	82	8	3124	38	12	14	33	1.84
55577003--55579901	413	7.0	410	86	6	3182	38	12	14	33	1.84
55581182--55582679	414	3.6	410	85	5	1948	40	12	13	34	1.82
55583121--55583166	16	2.6	18	73	16	51	63	10	0	26	1.27
55583243--55583306	30	2.1	31	94	2	112	57	12	3	26	1.50
55584673--55587439	418	6.6	419	84	5	3390	39	11	14	34	1.82
55601102--55601345	46	5.6	46	85	11	327	28	22	14	34	1.94
55601237--55601309	36	2.0	36	94	0	128	28	21	12	36	1.90
55601191--55601345	82	1.9	82	93	0	265	29	22	12	35	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55607446--55607535	19	5.0	17	73	17	83	42	12	14	31	1.82
55607448--55607535	36	2.4	36	88	5	124	40	12	14	31	1.84
55607448--55607535	18	4.8	18	79	6	106	40	12	14	31	1.84
55607566--55607623	17	3.4	17	74	11	64	37	12	12	37	1.80
55607716--55607764	17	2.8	17	82	11	64	44	10	16	28	1.80
55608268--55608350	43	2.0	42	83	7	105	9	27	36	26	1.88
55608354--55608420	23	2.8	24	85	12	86	1	23	5	68	1.20
55608354--55608420	22	3.0	22	81	14	66	1	23	5	68	1.20
55608516--55608583	4	18.5	4	71	19	51	0	23	1	75	0.89
55608517--55608585	19	3.8	18	83	14	72	0	24	1	73	0.91
55608670--55608733	19	3.2	20	82	13	78	1	12	10	75	1.13
55608670--55608717	21	2.3	21	89	10	73	0	12	10	77	1.00
55608827--55608852	11	2.4	11	100	0	52	7	7	15	69	1.35
55609154--55609266	60	1.9	60	80	7	131	44	4	21	30	1.72
55609169--55609266	30	3.3	30	88	5	128	44	5	20	29	1.73
55609419--55610364	74	12.5	75	91	4	1465	38	19	15	26	1.91
55609419--55610364	152	6.2	151	93	3	1496	38	19	15	26	1.91
55611432--55611466	9	3.9	9	100	0	70	11	34	20	34	1.88
55613898--55613934	16	2.3	16	95	0	65	32	10	8	48	1.67
55613898--55613943	16	3.1	15	82	14	51	30	8	8	52	1.62
55616177--55616545	78	4.8	77	91	3	584	35	20	15	28	1.93
55617413--55617475	28	2.2	29	86	8	85	3	9	4	82	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55617415--55617483	17	3.9	17	81	11	59	4	8	4	82	0.93
55617440--55617484	19	2.4	18	85	10	63	4	4	4	86	0.78
55623127--55623160	14	2.6	14	90	9	54	64	2	11	20	1.39
55623261--55623324	30	2.1	30	94	0	110	45	4	21	28	1.72
55625460--55625526	23	2.9	24	82	8	77	41	20	10	26	1.85
55625485--55625803	23	13.9	23	68	11	109	44	20	9	26	1.81
55625470--55625842	69	5.4	68	88	2	471	44	19	10	26	1.82
55625671--55625838	23	7.4	23	69	9	103	44	18	13	23	1.85
55625470--55625842	137	2.7	138	86	2	491	44	19	10	26	1.82
55626645--55626800	41	3.8	41	79	5	127	34	25	17	22	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204