genome.fa.s26.2.7.7.80.10.50.1000.187.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Length:  60343961

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  187  of  204  ( 24404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55627388--55627426	16	2.4	16	100	0	78	48	25	7	17	1.74
55636844--55636873	15	2.0	15	100	0	60	40	0	0	60	0.97
55636928--55636964	16	2.2	18	85	9	51	45	0	2	51	1.15
55648534--55648571	19	2.0	19	85	10	51	36	0	0	63	0.95
55660503--55660534	15	2.1	15	94	0	55	40	21	6	31	1.78
55663061--55663107	17	2.7	18	83	3	51	31	2	2	63	1.18
55666711--55666756	19	2.3	20	85	10	60	54	6	0	39	1.26
55671133--55671171	19	2.1	19	95	0	69	35	23	12	28	1.91
55689746--55689800	22	2.5	23	79	5	69	60	3	5	30	1.37
55691731--55691987	125	2.1	125	85	2	338	28	15	21	33	1.95
55695190--55695224	7	5.1	7	96	3	63	14	0	42	42	1.45
55695190--55695233	21	2.2	20	87	4	61	20	0	38	40	1.53
55695240--55695285	23	2.0	23	86	4	65	34	0	23	41	1.55
55695217--55696005	30	27.3	29	86	6	966	30	1	24	44	1.61
55695217--55696005	59	13.6	58	89	4	1036	30	1	24	44	1.61
55695299--55695344	23	2.0	23	86	4	65	32	0	23	43	1.54
55695580--55696021	29	16.0	25	81	13	205	30	1	23	45	1.62
55695991--55696030	19	2.2	19	86	4	55	32	0	20	47	1.50
55695998--55696035	19	2.0	19	89	0	58	31	2	18	47	1.62
55698170--55698203	15	2.3	15	90	5	52	67	5	2	23	1.26
55698399--55698440	22	1.9	22	90	0	66	33	0	33	33	1.58
55698442--55698518	22	3.5	22	85	1	102	37	1	27	33	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55701654--55701881	112	2.0	111	88	2	341	30	19	14	35	1.91
55709035--55709098	24	2.9	22	78	13	69	46	0	0	53	1.00
55709444--55709504	11	5.9	11	74	18	60	40	1	0	57	1.08
55709421--55709523	40	2.6	40	75	20	124	39	0	0	59	1.04
55709493--55709548	23	2.4	23	85	5	69	44	0	1	53	1.11
55713458--55713504	21	2.3	20	85	3	58	21	2	17	59	1.47
55717741--55717790	25	2.0	25	84	4	64	52	6	0	42	1.26
55718068--55718117	13	3.8	13	82	7	66	38	26	0	36	1.57
55718434--55718484	19	2.8	19	77	16	56	62	9	7	19	1.50
55722530--55722587	26	2.1	28	84	6	75	53	0	3	43	1.17
55725030--55725424	132	3.0	132	93	0	664	27	23	20	29	1.99
55729493--55729554	30	2.1	30	96	0	115	40	19	12	27	1.88
55733836--55733949	48	2.3	49	80	4	124	28	21	19	30	1.98
55735084--55735171	30	2.9	30	80	11	99	53	1	2	43	1.20
55736178--55736282	33	3.3	33	68	12	112	22	7	17	52	1.69
55736167--55736288	61	2.0	61	100	0	244	24	8	14	52	1.69
55753912--55753950	21	1.9	20	89	5	60	61	0	2	35	1.10
55757919--55757983	23	2.7	24	86	11	89	47	1	0	50	1.10
55757921--55757960	9	4.7	9	82	17	50	45	0	0	55	0.99
55757873--55758029	85	1.9	84	89	9	241	47	2	1	48	1.23
55765759--55765869	44	2.5	42	81	9	132	30	24	19	25	1.98
55765977--55766257	87	3.3	86	72	9	266	28	22	20	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55765833--55766303	172	2.7	172	85	6	600	27	23	19	28	1.98
55765927--55766209	83	3.3	83	71	8	244	28	22	20	28	1.98
55765759--55766474	216	3.3	213	82	7	729	28	23	19	28	1.98
55766053--55766345	89	3.4	88	74	7	294	27	24	20	27	1.99
55766049--55766680	172	3.7	172	79	8	503	28	22	19	29	1.98
55765722--55766736	388	2.6	388	91	1	1611	28	22	19	28	1.98
55766097--55766519	216	2.0	216	93	0	722	28	23	19	28	1.98
55766313--55766692	173	2.2	172	86	3	532	29	21	19	29	1.98
55765798--55766736	44	21.7	43	66	17	220	28	23	19	29	1.98
55775902--55775931	11	2.7	11	89	0	51	46	3	0	50	1.18
55775916--55775991	30	2.5	31	95	2	136	32	0	0	67	0.91
55775884--55775961	41	1.9	41	94	0	138	34	1	0	64	1.02
55779389--55779420	17	1.9	16	93	6	55	65	6	0	28	1.16
55783588--55783925	33	9.7	33	68	25	137	21	20	27	31	1.98
55783586--55783889	102	3.0	102	87	4	443	20	19	27	31	1.97
55783763--55783815	27	2.0	26	92	3	88	16	22	30	30	1.96
55786747--55786859	57	2.0	57	85	3	156	30	18	24	25	1.98
55788162--55788211	3	16.7	3	76	15	50	34	2	2	62	1.18
55788180--55788211	16	2.0	16	93	0	55	31	3	0	65	1.08
55788767--55788798	12	2.7	12	95	0	55	18	9	0	71	1.12
55791272--55791369	28	3.5	28	83	6	135	51	18	13	17	1.77
55791263--55791369	30	3.9	28	81	10	125	50	18	14	16	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55809778--55809809	6	5.3	6	100	0	64	15	0	0	84	0.63
55813529--55813561	13	2.4	14	90	5	50	42	12	6	39	1.67
55822314--55822390	37	2.0	39	87	9	115	66	0	2	31	1.05
55822655--55822724	10	7.2	10	74	9	56	64	0	1	34	1.03
55822718--55822782	19	3.4	18	78	6	67	60	3	9	27	1.43
55822718--55822782	20	3.4	19	76	6	69	60	3	9	27	1.43
55822653--55822784	9	13.9	9	67	20	65	62	1	5	31	1.27
55822802--55822832	16	1.9	16	93	0	53	19	3	0	77	0.90
55824114--55824182	35	2.0	34	88	5	104	43	8	5	42	1.59
55824153--55824222	18	3.9	18	73	17	65	51	12	10	25	1.71
55824152--55824585	17	24.3	18	67	17	135	40	10	15	32	1.82
55824351--55824496	35	4.1	33	79	13	116	40	11	15	32	1.84
55824382--55824496	53	2.2	54	85	4	162	39	12	16	32	1.86
55824120--55824499	52	7.2	52	72	11	179	40	11	15	32	1.83
55824376--55824497	35	3.5	35	82	5	122	39	13	16	31	1.87
55824704--55824757	16	3.5	15	87	2	63	61	0	1	37	1.07
55824704--55824756	5	10.2	5	84	8	70	60	0	1	37	1.08
55824718--55824757	21	1.9	21	94	0	62	62	0	2	35	1.09
55824916--55824961	10	4.1	12	78	21	55	0	23	0	76	0.79
55824914--55824956	11	3.7	11	87	9	59	0	23	0	76	0.78
55824914--55824959	23	2.0	24	86	4	67	0	23	0	76	0.79
55825049--55825095	18	2.6	18	82	0	58	2	19	23	55	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55825209--55825268	11	5.8	11	80	11	58	0	25	0	75	0.81
55825210--55825276	11	6.2	11	76	15	52	0	26	0	73	0.84
55825644--55825799	30	5.2	30	80	3	163	45	1	16	36	1.58
55825644--55825808	59	2.8	59	83	4	188	47	1	15	35	1.56
55825659--55825805	29	5.0	29	80	4	150	47	2	16	34	1.58
55825946--55827611	78	21.8	76	75	11	1005	35	20	16	27	1.94
55825947--55826623	73	8.7	79	76	10	551	35	20	16	27	1.94
55826258--55826634	77	5.0	77	79	9	318	37	20	15	26	1.92
55826688--55827631	78	12.2	78	83	7	1103	36	19	16	26	1.93
55826629--55827632	153	6.5	153	83	7	1107	36	19	17	26	1.94
55825965--55827632	463	3.6	454	79	11	1638	36	19	16	27	1.94
55828496--55828577	10	8.6	9	82	12	67	1	6	9	82	0.88
55828490--55828577	19	4.6	18	73	17	70	1	6	9	82	0.88
55828507--55828578	37	1.9	38	86	8	103	2	4	11	81	0.92
55828490--55828566	27	2.9	26	76	19	79	1	6	9	83	0.87
55836130--55836201	16	4.2	17	72	16	60	52	9	9	27	1.65
55836273--55836537	18	14.9	18	77	14	232	42	12	14	30	1.82
55836264--55836538	35	7.8	34	81	11	272	42	11	14	31	1.82
55836613--55836639	10	2.7	10	100	0	54	14	0	7	77	0.97
55836890--55836922	13	2.7	13	86	13	52	0	24	0	75	0.80
55836890--55836937	10	4.2	12	80	20	59	0	25	0	75	0.81
55836884--55836935	23	2.3	23	86	3	70	0	21	0	78	0.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55836884--55836932	11	4.5	11	85	7	64	0	20	0	79	0.73
55837029--55837063	18	1.9	18	94	0	61	2	20	22	54	1.58
55837031--55837072	18	2.3	18	84	8	50	4	16	23	54	1.61
55837175--55837222	16	2.9	16	84	3	69	0	25	0	75	0.81
55837176--55837219	24	1.9	22	90	9	70	0	25	0	75	0.81
55837604--55837754	58	2.6	57	82	7	160	49	2	15	32	1.59
55837604--55837731	30	4.4	29	78	11	127	46	3	17	32	1.64
55842654--55842719	24	2.8	23	84	11	89	46	16	1	34	1.56
55843087--55843139	25	2.1	25	86	6	72	30	0	0	69	0.88
55847880--55848070	36	5.0	36	84	12	247	28	20	13	37	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204