genome.fa.s26.2.7.7.80.10.50.1000.44.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Length:  60343961

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  44  of  204  ( 24404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12832011--12832054	23	1.9	23	85	0	61	43	27	22	6	1.78
12838547--12838590	21	2.0	23	87	12	67	56	0	0	43	0.99
12842372--12842415	22	2.1	22	83	8	56	54	4	15	25	1.60
12843381--12843416	19	1.9	18	100	0	63	61	5	11	22	1.50
12843853--12843902	21	2.4	21	90	3	75	24	36	8	32	1.84
12843853--12843908	21	2.8	19	80	17	60	21	35	7	35	1.81
12847447--12847471	12	2.1	12	100	0	50	40	28	8	24	1.83
12850341--12850431	45	2.0	45	93	0	155	29	24	29	16	1.96
12855573--12855614	12	3.7	12	90	9	54	69	19	0	11	1.19
12855581--12855620	6	6.7	6	88	8	55	70	15	0	15	1.18
12855593--12855686	45	2.1	45	86	4	127	71	6	10	11	1.31
12855678--12855702	8	3.1	8	100	0	50	76	0	24	0	0.80
12856467--12856518	20	2.5	20	81	9	59	73	1	9	15	1.18
12857789--12858473	100	6.8	100	89	0	1010	31	24	19	23	1.98
12859850--12859894	23	2.1	20	84	12	54	24	0	6	68	1.13
12872533--12872684	78	2.0	77	96	1	277	26	26	23	24	2.00
12879264--12879290	8	3.4	8	100	0	54	22	0	0	77	0.76
12882145--12882175	14	2.2	14	94	0	53	48	9	22	19	1.78
12886840--12886882	21	2.2	19	83	8	50	53	2	0	44	1.13
12887140--12887178	19	2.1	19	85	0	51	64	20	10	5	1.44
12890408--12890460	4	13.2	4	82	7	54	22	3	1	71	1.12
12891080--12891133	28	1.9	28	96	0	99	40	5	24	29	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12892905--12892954	26	1.9	26	84	8	66	4	14	4	78	1.05
12900258--12900296	14	2.9	14	92	3	62	53	7	17	20	1.68
12900436--12900463	14	2.0	14	100	0	56	35	7	0	57	1.26
12912945--12912974	6	5.0	6	100	0	60	16	16	33	33	1.92
12922854--12922884	16	1.9	16	93	0	53	35	12	12	38	1.82
12927275--12927341	31	2.3	27	78	14	71	43	11	7	37	1.70
12928960--12929704	110	6.7	110	85	2	962	33	20	13	32	1.91
12932064--12932099	11	3.2	12	85	14	51	44	0	0	55	0.99
12947887--12947964	28	2.8	28	79	14	81	14	8	3	73	1.22
12947901--12947964	27	2.4	27	84	5	76	14	9	3	73	1.20
12950287--12950381	49	1.9	49	89	0	145	42	10	16	30	1.82
12950910--12950978	35	1.9	36	88	2	104	56	2	11	28	1.49
12957968--12958099	26	5.1	26	80	0	138	40	25	18	16	1.91
12957971--12958099	52	2.5	52	83	0	177	39	24	18	17	1.91
12957984--12958103	26	4.6	26	80	0	141	37	24	20	18	1.94
12965374--12965429	26	2.2	26	96	0	103	32	25	25	17	1.97
12969950--12970232	117	2.4	117	83	1	354	27	19	26	26	1.99
12970251--12970724	50	9.5	49	64	8	186	31	21	22	24	1.98
12970201--12970780	100	5.8	100	90	1	869	30	21	23	25	1.99
12970599--12970758	50	3.2	49	67	10	135	31	20	23	24	1.98
12970795--12971147	45	8.0	45	72	9	196	30	20	24	24	1.98
12999690--12999719	10	3.0	10	100	0	60	20	10	0	70	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13001245--13001481	27	8.8	27	84	2	271	21	16	21	41	1.90
13004874--13005060	27	6.9	26	79	5	178	20	14	19	45	1.85
13004872--13005070	81	2.5	81	83	5	233	21	14	19	45	1.84
13004862--13005060	54	3.7	53	82	5	220	21	14	20	43	1.87
13011198--13011340	76	1.9	78	86	2	209	37	3	18	41	1.67
13019299--13019376	34	2.3	34	79	0	93	44	14	17	23	1.85
13022762--13022826	19	3.2	19	68	16	58	16	27	29	26	1.97
13024710--13024756	20	2.3	20	100	0	94	42	19	12	25	1.86
13026102--13026141	21	1.9	21	90	10	64	30	40	22	7	1.81
13026237--13026289	23	2.2	24	77	9	56	47	11	20	20	1.81
13044138--13044177	18	2.2	18	86	4	53	12	27	0	60	1.33
13045242--13045279	14	2.6	15	95	4	69	21	13	5	60	1.52
13045323--13045377	11	4.6	11	79	16	65	16	1	7	74	1.12
13045322--13045377	12	4.6	12	82	4	76	16	1	7	75	1.11
13047772--13047837	34	1.9	34	87	6	98	31	7	15	45	1.74
13057279--13057341	28	2.1	29	82	8	74	20	14	11	53	1.70
13059415--13059451	4	9.2	4	93	0	65	27	0	0	72	0.84
13082425--13082590	25	6.7	25	72	12	103	33	19	25	22	1.97
13082481--13082586	24	4.3	25	72	8	83	32	18	28	20	1.97
13082622--13082673	24	2.2	24	85	0	68	38	19	23	19	1.93
13090232--13090417	50	3.8	49	73	11	150	34	19	27	18	1.95
13090254--13090417	25	6.6	25	76	8	113	34	19	28	18	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13090332--13090433	24	4.2	24	82	3	96	37	21	25	15	1.93
13092222--13092292	24	2.8	25	75	12	65	46	1	5	46	1.35
13098385--13098441	29	2.0	29	92	0	96	24	12	26	36	1.91
13108951--13109011	24	2.5	25	78	7	72	34	22	26	16	1.95
13118634--13118671	18	2.2	17	86	9	51	23	7	0	68	1.16
13120411--13120456	22	2.1	22	100	0	92	17	13	8	60	1.56
13137013--13137065	26	2.0	27	92	3	90	26	7	18	47	1.75
13144514--13144645	37	3.6	37	81	3	160	15	10	32	41	1.81
13147181--13147297	62	1.9	61	83	8	150	50	4	4	41	1.41
13147282--13147336	25	2.2	25	81	12	60	49	5	1	43	1.36
13148942--13148970	14	2.0	15	93	6	51	68	13	6	10	1.37
13153684--13153791	43	2.5	43	87	0	153	37	21	18	22	1.94
13153766--13153880	40	2.9	40	84	2	133	40	16	17	25	1.90
13153806--13153872	20	3.3	20	65	8	55	34	17	20	26	1.96
13153818--13153879	20	3.1	20	65	9	54	38	19	17	24	1.93
13157268--13157323	3	18.0	3	75	14	51	30	1	5	62	1.28
13157255--13157327	28	2.6	28	84	2	94	27	2	6	63	1.34
13157621--13157671	4	12.8	4	95	0	93	52	21	0	25	1.47
13157625--13157677	12	4.3	12	95	2	79	52	20	0	26	1.46
13169580--13169706	45	2.8	45	78	6	130	31	18	21	29	1.96
13169728--13169836	44	2.5	43	80	3	119	34	20	18	26	1.95
13171404--13171463	22	2.6	22	82	10	68	31	1	5	61	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13171391--13171464	28	2.6	28	82	4	87	28	2	6	62	1.35
13180977--13181013	14	2.7	15	84	16	53	16	10	0	72	1.10
13182603--13182640	16	2.3	17	86	4	51	57	21	0	21	1.40
13188578--13188687	46	2.4	46	84	3	141	37	14	18	30	1.90
13188578--13188694	23	5.1	23	80	0	126	37	14	17	29	1.90
13198731--13198760	15	2.0	15	100	0	60	40	13	6	40	1.71
13200856--13200955	42	2.4	42	81	0	101	38	18	25	19	1.93
13206420--13206519	42	2.4	42	86	0	128	37	19	28	16	1.92
13219595--13219685	28	3.2	28	74	11	80	54	2	10	31	1.47
13232116--13232505	196	2.0	196	97	0	744	31	11	20	36	1.89
13236003--13236074	16	5.0	13	75	24	65	29	0	1	69	0.97
13235994--13236075	23	3.8	20	76	19	76	28	1	1	69	1.03
13236030--13236095	25	2.7	24	76	6	60	25	1	4	68	1.18
13241584--13241635	3	17.3	3	95	0	95	30	0	1	67	1.02
13242835--13242860	6	4.3	6	100	0	52	0	53	0	46	1.00
13242897--13243208	143	2.1	148	88	5	463	42	11	3	42	1.57
13244163--13244260	48	2.0	48	100	0	196	34	8	20	36	1.82
13254727--13254784	18	3.2	17	76	13	53	32	1	22	43	1.64
13255266--13255322	23	2.4	24	80	19	66	56	5	3	35	1.39
13259946--13260000	20	2.8	21	89	10	89	50	0	25	23	1.49
13259946--13260023	20	4.1	20	80	15	87	51	0	24	24	1.49
13259986--13260017	16	1.9	17	93	6	57	40	0	31	28	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13260375--13260411	9	4.1	9	89	0	56	32	10	10	45	1.74
13260677--13261837	489	2.3	489	80	5	1271	37	12	11	38	1.79
13267733--13267806	30	2.5	30	88	0	103	37	21	18	21	1.94
13267924--13268171	61	4.1	61	82	5	286	40	25	14	19	1.90
13267961--13268127	32	5.4	31	65	11	92	41	24	13	19	1.88
13278317--13278359	21	2.0	21	95	0	77	27	0	37	34	1.57
13278340--13278372	16	2.1	16	94	0	57	33	0	36	30	1.58
13278351--13278445	45	2.1	44	88	1	136	34	5	27	32	1.79
13278607--13278641	18	2.0	17	88	5	52	54	0	0	45	0.99
13278565--13278637	27	2.7	27	76	8	76	52	2	0	45	1.15

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204