genome.fa.s26.2.7.7.80.10.50.1000.158.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Length:  60343961

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  158  of  204  ( 24404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47840882--47840933	18	2.9	18	82	5	61	42	13	17	26	1.86
47843088--47843211	58	2.1	60	92	6	207	40	14	11	33	1.82
47847996--47848105	41	2.7	42	76	8	118	20	18	28	33	1.96
47852224--47852265	21	2.0	22	90	4	68	30	7	7	54	1.54
47852269--47852360	44	2.1	44	91	0	148	26	15	19	39	1.91
47863796--47863822	6	4.5	6	100	0	54	0	0	29	70	0.88
47870286--47870342	25	2.2	27	81	6	64	45	1	5	47	1.35
47872786--47872864	26	3.0	26	76	14	72	35	7	10	46	1.66
47882356--47882430	39	1.9	39	91	0	123	48	2	9	40	1.50
47892553--47892596	21	2.2	21	88	8	65	63	15	2	18	1.41
47892800--47892843	12	3.7	12	93	0	70	54	0	13	31	1.39
47892799--47892847	15	3.3	15	88	0	62	57	0	12	30	1.36
47892855--47892888	17	1.9	18	88	5	52	82	11	2	2	0.89
47893430--47893456	1	27.0	1	100	0	54	100	0	0	0	0.00
47894839--47894939	52	1.9	52	95	0	184	40	7	5	45	1.58
47902608--47902732	62	2.0	62	100	0	250	33	14	25	26	1.94
47903214--47903257	22	2.0	22	100	0	88	13	18	13	54	1.71
47903313--47903339	12	2.2	12	100	0	54	59	14	25	0	1.36
47908720--47908765	5	9.4	5	95	4	85	58	0	0	41	0.98
47909172--47910644	737	2.0	737	93	0	2545	34	20	10	34	1.88
47913307--47913380	29	2.5	29	82	8	87	41	5	4	48	1.45
47916036--47916069	17	1.9	18	88	5	52	38	0	17	44	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47919275--47919318	15	3.1	15	74	12	56	13	22	9	54	1.67
47920769--47920833	31	2.1	31	97	0	121	32	10	10	46	1.73
47921226--47921287	23	2.5	24	84	12	81	37	3	8	51	1.48
47922344--47922442	40	2.5	40	83	0	126	42	18	16	23	1.89
47922424--47922483	27	2.3	27	82	8	70	53	16	5	25	1.63
47926489--47926764	43	6.5	42	78	5	176	21	17	29	31	1.96
47926493--47926739	86	2.9	85	79	2	226	23	17	30	28	1.97
47927304--47927474	72	2.4	72	85	4	249	25	5	14	54	1.61
47929506--47929530	13	1.9	13	100	0	50	40	28	8	24	1.83
47933395--47933420	5	5.2	5	100	0	52	19	19	42	19	1.90
47935932--47938118	972	2.2	972	95	0	3910	33	19	17	29	1.95
47946797--47946823	3	9.0	3	100	0	54	66	0	33	0	0.92
47949844--47949887	15	2.8	16	83	16	56	70	2	2	25	1.10
47951713--47951745	16	2.0	17	88	5	50	75	0	0	24	0.80
47951741--47951769	12	2.3	13	94	5	51	65	0	6	27	1.18
47958456--47958507	25	2.0	28	88	11	83	51	3	11	32	1.56
47960401--47960504	41	2.5	41	92	0	163	26	23	28	21	1.99
47962158--47962333	41	4.3	41	87	0	253	25	26	17	30	1.97
47962501--47962595	41	2.3	41	98	0	181	23	27	21	28	1.99
47967604--47967669	31	2.1	31	85	0	87	46	18	7	27	1.75
47967757--47967799	18	2.4	19	76	11	54	46	2	4	46	1.36
47968100--47968160	31	2.0	31	90	0	95	18	14	22	44	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47969851--47969896	23	2.0	23	87	4	67	65	0	0	34	0.93
47970488--47970581	48	2.0	48	87	8	138	40	26	12	20	1.88
47972998--47973091	48	2.0	48	87	8	138	40	26	12	20	1.88
47974521--47974579	27	2.2	27	87	0	82	30	25	28	15	1.96
47974788--47974865	27	2.9	27	86	0	111	15	29	21	33	1.94
47974789--47974874	27	3.2	27	81	6	102	15	27	24	32	1.95
47974895--47974930	18	2.0	18	88	0	54	8	2	8	80	0.99
47974923--47974985	29	2.3	29	91	8	105	47	0	7	44	1.32
47979318--47979406	43	2.1	43	97	0	169	31	13	10	44	1.77
47979497--47979555	20	2.9	22	80	14	65	44	8	11	35	1.72
47979508--47979551	21	2.1	21	86	0	61	40	6	11	40	1.68
47979517--47979562	20	2.2	21	84	3	58	50	8	6	34	1.59
47979496--47979569	21	3.7	20	76	7	51	45	6	9	37	1.63
47979701--47979736	18	2.0	18	88	0	54	38	0	0	61	0.96
47979920--47979973	22	2.5	22	75	6	56	46	11	12	29	1.77
47980175--47980252	31	2.6	30	76	8	77	50	6	6	37	1.54
47987289--47987317	13	2.1	14	93	6	51	58	0	6	34	1.25
47996934--47997017	31	2.9	27	84	12	96	30	8	16	44	1.77
47997386--47997425	14	2.9	14	84	0	53	32	7	17	42	1.77
47997409--47997448	20	2.0	20	90	0	62	27	10	12	50	1.72
47997394--47997460	34	1.9	35	90	3	109	31	8	13	46	1.74
48002612--48002679	27	2.6	27	83	2	93	39	10	0	50	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48003213--48003273	19	3.3	17	75	13	50	40	11	1	45	1.50
48003764--48003821	27	2.2	26	96	3	107	17	27	31	24	1.97
48003871--48003940	28	2.6	27	81	2	86	48	0	11	40	1.39
48006073--48006139	26	2.6	25	77	13	73	44	7	0	47	1.31
48007347--48007380	17	1.9	18	94	5	61	47	11	0	41	1.40
48014325--48014357	16	2.1	16	94	0	57	48	3	0	48	1.17
48030195--48030311	62	1.9	59	86	5	162	41	2	3	52	1.32
48030281--48030324	15	2.9	15	80	6	52	43	0	6	50	1.29
48034758--48034926	71	2.4	71	85	2	223	30	21	15	32	1.95
48036917--48036960	9	4.7	9	88	8	52	81	0	4	13	0.83
48036917--48036964	10	4.8	10	82	10	62	79	0	4	16	0.89
48036926--48036961	9	3.9	9	89	7	54	86	0	2	11	0.68
48037942--48037986	20	2.1	22	84	12	58	13	11	8	66	1.44
48038807--48038911	35	3.1	34	82	8	133	18	20	17	44	1.87
48038807--48038902	32	2.9	33	85	4	122	17	21	17	42	1.89
48041711--48041755	20	2.1	22	84	12	58	13	11	8	66	1.44
48048476--48048519	20	2.1	22	84	16	58	68	9	9	13	1.40
48051310--48051483	35	5.2	33	82	8	208	42	17	22	17	1.89
48051313--48051483	67	2.6	67	93	0	279	42	17	22	18	1.89
48053401--48053459	17	3.4	17	75	25	61	50	6	1	40	1.39
48055719--48055812	47	2.0	47	93	0	161	32	23	13	29	1.93
48060971--48061043	37	2.0	37	100	0	146	23	30	16	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48064232--48064314	31	2.7	31	84	0	112	22	37	22	16	1.94
48064466--48064629	35	4.6	35	84	3	193	42	17	14	25	1.87
48067809--48067867	30	2.0	30	86	6	84	25	5	6	62	1.41
48067983--48068044	31	1.9	32	90	6	99	20	25	24	29	1.99
48068139--48068303	43	3.9	42	79	8	156	20	21	26	32	1.98
48068158--48068322	86	1.9	85	80	9	192	23	21	23	31	1.98
48068290--48068452	43	3.7	43	77	15	181	30	30	18	20	1.97
48068771--48068858	42	2.1	42	85	4	115	5	38	15	39	1.72
48068760--48068858	21	4.7	21	79	0	99	5	39	16	39	1.70
48068840--48068986	66	2.2	66	84	4	181	14	27	17	40	1.89
48068883--48069009	66	1.9	66	87	3	184	15	24	18	41	1.89
48074413--48074446	16	2.1	16	94	0	59	32	0	14	52	1.42
48074427--48074482	25	2.2	25	83	0	67	35	5	14	44	1.68
48074484--48074681	9	22.7	9	65	16	60	38	3	14	43	1.61
48074526--48074604	34	2.3	34	80	0	86	41	1	13	43	1.53
48074604--48074868	34	7.7	34	73	14	204	38	3	10	47	1.53
48074699--48075073	56	6.7	56	94	3	666	38	2	11	47	1.54
48074843--48074970	9	13.8	9	68	19	59	34	3	12	50	1.56
48074908--48075002	22	4.8	21	78	17	80	35	2	12	49	1.53
48074895--48074970	16	4.1	18	73	18	66	31	3	14	50	1.61
48075165--48075217	24	2.2	24	96	0	97	49	3	3	43	1.38
48076948--48077021	33	2.2	33	92	2	121	36	28	2	32	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48077237--48077275	16	2.6	15	84	11	53	35	5	35	23	1.77
48077270--48077323	23	2.3	23	84	6	65	40	1	37	20	1.63
48078519--48078549	16	1.9	16	93	0	53	29	51	0	19	1.47
48078951--48078997	22	2.1	22	84	7	60	53	4	2	40	1.32
48079428--48079629	42	4.8	42	85	3	255	32	25	27	14	1.95
48079608--48079649	18	2.4	18	96	4	77	35	28	16	19	1.93
48079643--48079716	24	3.4	24	63	25	65	28	29	25	16	1.97
48079575--48079690	59	1.9	61	89	3	182	33	27	23	15	1.95
48079636--48079722	41	2.1	41	100	0	174	34	28	22	13	1.93
48079771--48079906	40	3.4	39	76	5	112	17	23	20	38	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204