genome.fa.s26.2.7.7.80.10.50.1000.162.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Length:  60343961

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  162  of  204  ( 24404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48956879--48956916	13	2.9	13	81	14	51	78	2	5	13	1.02
48963886--48963940	3	18.3	3	96	0	101	69	0	30	0	0.89
48992708--48993712	89	11.3	89	95	0	1708	29	20	24	25	1.99
48993687--48994431	89	8.4	89	90	1	924	31	17	24	27	1.97
48992717--48994503	267	6.7	268	84	4	1532	30	18	24	26	1.98
48993606--48994475	89	9.8	88	86	4	885	31	17	24	27	1.97
48999775--48999807	11	2.8	12	86	13	50	54	0	0	45	0.99
48999981--49000013	17	1.9	17	93	0	57	33	21	6	39	1.78
49021262--49021306	23	2.0	23	100	0	90	17	31	13	37	1.89
49023167--49023195	15	1.9	15	100	0	58	34	27	13	24	1.93
49028409--49028448	20	2.0	20	85	9	55	42	5	0	52	1.23
49028409--49028448	19	2.0	20	85	4	55	42	5	0	52	1.23
49028739--49028811	28	2.7	27	85	4	101	38	5	0	56	1.23
49029320--49029377	27	2.1	27	90	0	89	18	32	29	18	1.96
49029667--49029713	16	2.7	17	84	12	60	25	0	12	61	1.31
49035211--49035236	11	2.4	11	100	0	52	38	15	7	38	1.76
49037469--49038420	286	3.3	286	94	0	1640	31	11	6	50	1.65
49038826--49038942	44	2.6	44	86	6	157	1	27	1	69	1.08
49038856--49038945	14	6.3	14	77	12	85	0	26	2	71	0.98
49038906--49038945	18	2.2	18	90	0	62	0	27	0	72	0.85
49040185--49040233	13	3.7	13	81	13	55	75	4	2	18	1.06
49043086--49043125	21	1.9	21	84	0	53	37	7	10	45	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49043230--49043269	19	2.0	20	85	4	55	32	12	0	55	1.38
49050296--49050322	6	4.5	6	100	0	54	0	81	0	18	0.69
49059421--49059458	14	2.8	14	84	4	51	42	13	0	44	1.43
49061121--49061170	3	17.3	3	79	8	59	66	4	0	30	1.10
49061121--49061167	18	2.7	18	87	6	71	65	4	0	29	1.11
49063444--49063526	42	2.0	42	92	0	139	40	4	22	31	1.75
49065058--49065142	30	2.8	30	75	7	91	37	21	14	27	1.91
49071532--49071636	36	2.9	36	77	2	113	43	16	19	20	1.88
49075189--49075348	80	2.0	80	97	0	302	31	10	19	38	1.86
49078782--49079168	50	7.7	50	81	3	445	29	24	16	30	1.96
49082527--49082651	49	2.6	49	92	2	207	32	27	12	27	1.93
49082527--49082672	49	3.0	49	86	8	199	33	26	11	28	1.91
49084738--49085120	50	7.6	50	81	4	414	30	24	15	30	1.96
49085584--49085637	16	3.5	16	72	10	58	25	22	5	46	1.73
49085582--49085638	30	1.9	30	92	0	96	28	22	5	43	1.75
49090813--49090838	3	8.7	3	100	0	52	34	0	30	34	1.58
49090837--49090872	3	12.0	3	100	0	72	66	0	0	33	0.92
49091039--49091071	3	11.0	3	87	12	50	66	0	3	30	1.06
49091022--49091072	21	2.5	20	84	9	52	60	1	7	29	1.36
49093993--49094026	3	11.3	3	93	0	59	64	0	0	35	0.94
49095759--49095877	41	2.9	40	78	14	127	18	22	26	31	1.97
49099294--49099336	15	2.9	15	80	13	52	6	18	11	62	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49099953--49099984	15	2.1	16	94	5	57	53	3	0	43	1.16
49099969--49100095	22	5.1	26	76	15	119	42	3	2	51	1.30
49099969--49100095	50	2.6	50	84	13	165	42	3	2	51	1.30
49099968--49100101	20	5.8	20	73	21	79	42	2	2	52	1.29
49099969--49100095	23	5.1	27	72	17	98	42	3	2	51	1.30
49099994--49100123	54	2.4	54	77	16	137	42	2	1	53	1.22
49100175--49100254	20	3.6	20	74	22	79	46	2	3	47	1.34
49100191--49100282	28	3.6	28	75	22	119	46	4	3	45	1.39
49100175--49100302	48	2.7	48	96	0	229	44	3	3	49	1.34
49100208--49100308	20	4.7	20	74	17	85	43	3	1	50	1.32
49100291--49100326	12	2.9	12	91	4	54	38	0	0	61	0.96
49100268--49100316	20	2.6	19	87	6	55	42	0	0	57	0.99
49100329--49100716	25	15.7	25	75	12	195	45	16	1	36	1.56
49100338--49100929	41	13.4	41	71	16	271	45	16	1	37	1.56
49100401--49100440	19	2.1	19	90	0	62	55	12	0	32	1.38
49100338--49100929	16	38.1	16	65	21	148	45	16	1	37	1.56
49100643--49100706	28	2.2	28	83	2	83	51	14	0	34	1.42
49100671--49100915	66	3.7	66	82	6	325	45	16	1	37	1.55
49100338--49100920	251	2.4	251	95	3	1062	45	16	1	37	1.56
49100318--49100937	25	25.1	25	71	17	161	45	16	1	36	1.56
49106358--49106514	66	2.4	66	85	2	208	38	16	27	17	1.91
49106858--49107107	43	5.9	42	74	9	175	25	19	26	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49108774--49108819	20	2.5	17	80	13	56	45	10	13	30	1.77
49110813--49110850	19	2.0	20	84	5	51	50	5	2	42	1.39
49114039--49114078	14	2.9	15	82	10	50	67	0	0	32	0.91
49115112--49115161	3	17.3	3	85	8	50	60	0	40	0	0.97
49115112--49115161	23	2.2	23	88	0	73	60	0	40	0	0.97
49115881--49115919	20	2.0	20	94	0	69	30	28	17	23	1.97
49117338--49117590	46	5.6	46	94	1	433	29	22	15	32	1.95
49123934--49124044	42	2.6	42	84	0	141	27	23	21	27	1.99
49124431--49124486	21	2.7	21	94	0	94	3	44	19	32	1.68
49129902--49130140	9	26.3	9	78	1	253	32	2	15	49	1.57
49130173--49130225	8	6.0	8	79	16	52	30	0	11	58	1.33
49130172--49130278	32	3.6	29	84	10	135	33	0	12	54	1.38
49130172--49130245	37	2.0	37	81	5	87	35	0	10	54	1.36
49130181--49130305	20	5.6	23	74	18	63	33	1	12	52	1.49
49130257--49130319	9	6.7	9	75	10	63	34	4	15	44	1.68
49130536--49130573	16	2.4	16	91	4	60	52	5	0	42	1.24
49130570--49130597	13	2.2	13	100	0	56	46	7	7	39	1.59
49130583--49130615	17	1.9	17	93	0	57	54	6	3	36	1.41
49131421--49131496	37	2.1	37	100	0	152	47	10	10	31	1.72
49131635--49131689	30	1.9	29	82	10	69	58	9	3	29	1.46
49132075--49132121	17	2.7	17	80	3	58	57	23	4	14	1.55
49134065--49134350	114	2.5	115	79	6	296	32	23	16	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49146679--49146740	20	3.2	20	64	13	58	30	19	14	35	1.92
49149228--49149262	16	2.2	16	94	0	61	45	14	20	20	1.85
49152816--49152982	46	3.6	46	80	0	154	28	14	11	45	1.79
49160904--49160936	17	1.9	17	100	0	66	42	9	0	48	1.35
49161359--49161415	21	2.7	21	78	7	71	35	22	3	38	1.72
49161929--49161987	16	3.7	15	72	22	50	57	5	1	35	1.31
49161959--49162011	25	2.2	24	82	3	61	64	7	0	28	1.21
49163319--49163356	20	1.9	20	88	0	58	39	7	7	44	1.63
49166319--49166482	90	1.8	90	86	0	238	38	9	34	17	1.82
49168513--49168548	17	2.2	16	90	5	54	66	2	0	30	1.06
49171151--49171253	41	2.5	41	91	0	161	30	24	21	24	1.99
49173063--49173087	13	1.9	13	100	0	50	68	24	0	8	1.16
49180542--49180595	30	1.9	26	82	14	63	42	0	11	46	1.39
49181166--49181212	13	3.5	13	88	5	67	25	0	0	74	0.82
49181563--49181608	16	2.8	17	80	9	60	47	0	2	50	1.13
49184248--49184280	13	2.4	14	90	5	50	9	12	0	78	0.95
49186831--49186886	21	2.8	21	76	15	55	48	14	1	35	1.54
49193440--49193488	19	2.6	19	76	0	62	28	6	22	42	1.77
49193700--49193769	27	2.7	27	91	4	108	52	0	5	41	1.25
49194218--49194294	30	2.6	30	76	15	72	70	5	3	20	1.23
49194594--49194636	15	2.9	15	86	10	54	67	4	0	27	1.10
49199043--49199073	9	3.4	9	90	0	53	25	12	22	38	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49207989--49208036	19	2.6	19	78	18	57	62	0	2	35	1.07
49209710--49209738	4	7.2	4	100	0	58	51	24	0	24	1.48
49209978--49210029	22	2.4	22	83	0	68	34	28	7	28	1.85
49212755--49212843	44	2.0	43	80	6	99	25	17	25	30	1.98
49212770--49212926	43	3.7	43	72	7	149	26	19	24	29	1.99
49213511--49213970	229	2.0	230	98	1	897	30	6	21	41	1.77
49216434--49216467	13	2.8	12	87	12	52	47	0	0	52	1.00
49217522--49217698	34	5.1	34	70	5	140	19	26	25	28	1.99
49217520--49217702	69	2.7	69	83	1	242	20	26	25	27	1.99
49227902--49227942	21	2.0	21	90	0	64	29	21	29	19	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204