genome.fa.s26.2.7.7.80.10.50.1000.103.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Length:  60343961

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  103  of  204  ( 24404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32001611--32001758	22	7.2	19	72	20	86	45	2	1	51	1.21
32001770--32001915	12	12.2	12	73	19	69	48	14	0	36	1.44
32001845--32001881	12	3.1	12	100	0	74	51	8	0	40	1.32
32001894--32002073	59	3.0	59	84	0	216	44	21	2	31	1.65
32001878--32002020	25	5.8	25	74	11	109	43	20	2	33	1.64
32001973--32002056	34	2.5	34	86	0	114	42	22	1	33	1.61
32001923--32002144	16	13.8	16	65	20	88	46	20	1	31	1.61
32002007--32002163	25	6.3	26	83	4	146	47	19	1	31	1.57
32007660--32007706	21	2.2	21	92	0	76	31	17	48	2	1.58
32007616--32007792	87	2.0	87	90	0	273	38	15	32	13	1.86
32008182--32008388	43	4.8	43	83	5	249	28	19	25	26	1.99
32008168--32008411	86	2.8	86	80	5	278	29	19	25	26	1.99
32008170--32008411	43	5.6	42	82	7	229	29	19	25	26	1.98
32008717--32008753	9	4.1	9	89	0	56	45	10	10	32	1.74
32008967--32009026	30	2.0	31	86	3	86	20	36	0	43	1.52
32011568--32011610	6	7.2	6	91	0	59	18	11	18	51	1.76
32012099--32012135	15	2.5	15	86	4	58	67	2	2	27	1.17
32015192--32015279	42	2.1	43	85	6	117	28	19	25	27	1.99
32015226--32015409	43	4.3	43	81	6	189	28	28	17	25	1.98
32015737--32015918	66	2.8	66	83	3	188	15	26	17	40	1.90
32015811--32015941	66	2.0	66	89	3	201	15	24	17	42	1.88
32021318--32021654	9	39.8	9	70	15	227	31	1	20	46	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32021321--32021635	25	12.6	26	75	12	177	31	1	20	46	1.60
32021323--32021605	16	17.0	16	72	12	134	31	1	20	46	1.59
32021323--32021645	118	2.7	117	92	5	528	30	1	20	47	1.59
32021323--32021501	34	4.9	34	72	16	115	30	1	20	47	1.60
32021549--32021647	25	5.1	19	69	27	73	29	1	19	50	1.54
32021785--32021827	22	2.0	23	82	13	56	55	0	2	41	1.12
32021701--32022137	120	3.6	121	94	2	747	44	6	8	40	1.59
32022158--32022247	18	4.9	18	79	14	103	42	0	12	45	1.41
32022197--32022305	35	3.1	35	79	8	103	40	1	11	45	1.52
32022277--32022340	13	4.8	13	75	17	60	40	1	12	45	1.51
32022365--32022404	21	1.9	21	84	0	53	37	17	5	40	1.72
32024585--32024785	83	2.4	83	75	8	201	36	18	16	28	1.93
32024525--32025419	449	2.0	450	91	0	1461	33	18	15	31	1.93
32025733--32025770	7	5.4	7	87	0	58	31	47	2	18	1.62
32026695--32026892	41	4.8	41	86	5	258	33	27	19	19	1.96
32026930--32027083	40	3.8	39	84	5	166	22	20	18	37	1.94
32027962--32028157	42	4.7	42	85	1	196	30	21	18	29	1.97
32027973--32028250	126	2.2	126	81	2	308	27	20	19	32	1.97
32028052--32028339	42	6.9	42	86	3	391	23	21	20	35	1.96
32030553--32030586	9	3.8	9	88	11	52	32	5	23	38	1.79
32030534--32031093	27	20.9	27	83	7	549	33	1	15	49	1.54
32030534--32031100	36	15.9	36	82	7	489	32	1	15	50	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32030562--32031100	63	8.5	64	85	4	638	33	1	15	50	1.53
32034543--32034577	14	2.4	15	90	4	54	42	37	0	20	1.52
32035490--32036025	115	4.7	114	72	6	372	26	22	18	32	1.97
32041184--32041296	61	1.9	58	87	5	163	41	3	4	50	1.39
32046047--32046137	39	2.4	37	78	7	85	26	28	24	20	1.99
32046305--32046350	23	2.0	24	82	4	58	32	26	0	41	1.56
32046495--32046541	3	15.7	3	100	0	94	65	0	0	34	0.93
32047169--32047206	19	2.0	20	84	5	51	0	23	0	76	0.79
32047229--32047280	16	3.3	15	74	12	50	3	13	5	76	1.10
32047743--32047789	17	2.8	17	78	9	53	48	4	0	46	1.21
32049209--32049283	37	2.0	37	100	0	150	18	13	21	46	1.83
32052941--32052968	7	4.0	7	100	0	56	28	14	14	42	1.84
32055753--32056024	113	2.4	114	80	7	286	32	19	8	39	1.81
32057884--32057960	36	2.3	32	76	18	84	41	16	22	19	1.90
32066874--32066929	26	2.2	26	83	0	67	28	25	23	23	1.99
32070441--32070556	43	2.7	43	74	5	126	25	18	26	29	1.98
32074746--32074770	8	3.1	8	100	0	50	76	0	0	24	0.80
32078831--32078857	13	2.1	13	100	0	54	22	22	18	37	1.95
32082026--32082087	28	2.2	29	86	13	94	67	3	1	27	1.15
32082017--32082086	28	2.4	29	83	11	90	70	4	1	24	1.14
32084901--32084950	18	2.8	17	80	19	57	28	4	2	66	1.21
32084965--32085001	19	2.0	19	94	5	67	35	0	5	59	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32084965--32085018	19	2.9	18	86	8	65	40	0	3	55	1.17
32084939--32085018	19	4.6	18	74	14	60	43	0	2	53	1.14
32085095--32085133	18	2.2	18	90	0	60	30	7	7	53	1.57
32088061--32088460	40	10.0	40	83	3	466	28	22	15	32	1.95
32094937--32094974	20	1.9	20	84	10	51	39	7	7	44	1.63
32096545--32096586	21	2.0	21	100	0	84	66	0	4	28	1.12
32097172--32097565	157	2.5	158	90	4	593	44	10	5	40	1.60
32097208--32097436	52	4.4	50	66	20	128	42	11	4	41	1.61
32098309--32098390	39	2.1	39	88	0	119	41	23	13	21	1.88
32098368--32098734	42	8.8	42	86	0	493	35	22	19	22	1.96
32098316--32098734	84	5.0	84	84	1	495	37	21	19	21	1.95
32098368--32098734	125	2.9	126	90	0	556	35	22	19	22	1.96
32108666--32108712	20	2.3	20	81	0	58	23	12	34	29	1.92
32110382--32110487	48	2.2	48	85	9	137	14	24	1	59	1.45
32113099--32113145	20	2.3	20	85	0	67	21	12	36	29	1.91
32117791--32117843	27	2.0	27	96	0	97	41	18	13	26	1.87
32118249--32118295	25	1.9	24	82	4	58	55	6	6	31	1.51
32118797--32118841	21	2.2	20	84	11	56	51	4	2	42	1.34
32118736--32119212	156	3.1	150	79	8	471	44	8	4	43	1.53
32119110--32119152	20	2.2	20	86	0	59	48	4	0	46	1.22
32121141--32121271	28	4.7	28	84	0	156	36	12	23	26	1.91
32121141--32121271	56	2.4	56	88	1	183	36	12	23	26	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32122857--32122890	17	2.0	17	88	0	50	41	0	0	58	0.98
32124650--32124690	18	2.3	18	100	0	82	24	29	17	29	1.97
32127831--32127859	15	1.9	15	100	0	58	13	0	37	48	1.43
32132503--32132549	15	3.0	15	76	17	51	29	2	2	65	1.15
32141788--32141844	30	1.9	30	82	7	71	19	42	1	36	1.62
32142195--32142274	38	2.2	37	82	8	92	41	8	1	48	1.42
32142235--32142268	17	1.9	18	94	5	61	41	2	0	55	1.15
32142817--32142945	43	3.0	42	90	2	204	29	34	17	19	1.94
32152181--32152528	41	8.5	41	84	1	419	18	24	28	28	1.98
32152907--32152939	14	2.3	15	94	5	59	30	0	33	36	1.58
32152971--32153071	7	14.1	7	73	8	51	21	0	43	34	1.53
32153021--32153076	21	2.6	21	86	8	69	21	0	42	35	1.53
32153750--32153805	16	3.5	16	76	7	60	64	3	7	25	1.35
32154121--32154166	24	2.0	24	86	4	67	26	43	2	28	1.66
32155567--32155608	22	1.9	22	95	0	75	47	14	0	38	1.44
32155851--32155901	25	2.1	24	89	10	77	33	0	3	62	1.13
32155905--32155975	25	2.8	25	86	0	106	47	15	0	36	1.46
32155943--32156056	16	7.0	16	81	9	126	49	17	0	33	1.47
32155929--32156056	41	3.1	41	86	4	179	50	17	0	32	1.46
32155905--32156056	66	2.3	66	90	2	243	48	16	0	34	1.46
32155943--32156064	25	5.0	25	81	11	107	48	18	0	33	1.48
32161584--32161620	19	1.9	19	94	0	65	27	10	2	59	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32161803--32162026	43	5.2	43	80	5	220	24	17	30	26	1.97
32172786--32172835	18	2.8	17	80	19	57	28	4	2	66	1.21
32172850--32172886	19	2.0	19	94	5	67	35	0	5	59	1.20
32172850--32172903	19	2.9	18	86	8	65	40	0	3	55	1.17
32172824--32172903	19	4.6	18	74	14	60	43	0	2	53	1.14
32172980--32173018	18	2.2	18	90	0	60	30	7	7	53	1.57
32175945--32176344	40	10.0	40	84	3	475	28	22	15	33	1.95
32185319--32185402	27	3.1	26	83	6	87	14	22	34	28	1.93
32185359--32185446	25	3.4	26	85	7	99	13	15	40	29	1.86
32185541--32185583	19	2.3	18	80	11	52	27	18	25	27	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204