genome.fa.s26.2.7.7.80.10.50.1000.107.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Length:  60343961

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  107  of  204  ( 24404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33211911--33211977	27	2.5	27	76	9	82	25	7	20	46	1.77
33212305--33212372	33	2.0	36	88	8	106	27	25	20	26	1.99
33212766--33212876	26	4.3	26	89	0	168	24	16	21	37	1.93
33219993--33220052	27	2.2	28	82	11	72	40	21	20	18	1.92
33220208--33220348	26	5.4	26	87	2	167	23	17	21	37	1.94
33220208--33220347	52	2.7	52	88	3	192	23	16	22	37	1.93
33223449--33223491	16	2.8	16	92	3	70	41	0	16	41	1.48
33223490--33223524	18	2.0	17	88	5	52	45	0	0	54	0.99
33223776--33223882	45	2.5	42	81	13	114	33	28	4	32	1.78
33223786--33223882	44	2.2	44	85	9	126	34	27	5	32	1.79
33223862--33223894	16	2.1	16	100	0	66	21	36	6	36	1.78
33236928--33237031	35	3.0	35	75	19	92	45	18	9	26	1.80
33243505--33243659	83	1.9	83	83	2	204	41	16	18	23	1.89
33256103--33256137	18	1.9	18	88	11	54	2	17	2	77	1.02
33264738--33264794	21	2.7	22	76	10	66	45	12	14	28	1.80
33265353--33265394	15	2.6	17	89	10	63	16	26	21	35	1.94
33266074--33266198	55	2.3	55	79	4	137	20	25	27	26	1.99
33268376--33268418	9	4.6	9	80	11	50	30	6	0	62	1.21
33268371--33268411	19	2.2	19	91	8	66	26	9	0	63	1.25
33270053--33270128	20	3.8	20	79	10	91	48	7	14	28	1.72
33284460--33284872	44	9.5	44	71	13	232	30	20	22	26	1.98
33284723--33284884	87	1.9	87	84	2	218	29	20	24	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33284456--33284923	214	2.2	215	87	6	678	30	20	22	26	1.98
33288643--33288695	20	2.7	19	88	8	79	43	16	13	26	1.85
33291822--33291866	21	2.1	21	95	0	81	51	4	28	15	1.63
33292626--33292651	11	2.4	11	100	0	52	73	0	0	26	0.84
33292771--33292813	10	4.2	10	76	5	50	74	2	9	13	1.16
33298002--33298054	26	2.0	26	92	0	88	16	13	24	45	1.83
33303798--33303826	14	2.1	14	93	6	51	62	0	0	37	0.96
33313593--33313619	2	13.5	2	100	0	54	0	0	51	48	1.00
33319277--33319310	15	2.2	16	89	5	52	64	0	8	26	1.22
33320279--33320346	27	2.6	28	77	15	74	64	0	0	35	0.94
33320268--33320345	12	6.2	13	70	19	58	61	0	0	38	0.96
33320301--33320354	24	2.2	26	86	6	76	57	0	0	42	0.98
33320756--33320796	16	2.6	16	88	3	57	34	0	2	63	1.08
33325052--33325104	10	5.0	10	78	13	61	83	1	9	5	0.89
33325053--33325104	11	4.7	11	81	9	61	84	1	7	5	0.84
33325230--33325302	29	2.4	29	84	4	83	47	12	13	26	1.78
33325783--33325810	12	2.3	12	100	0	56	0	7	0	92	0.37
33328206--33328243	18	2.1	18	100	0	76	28	39	0	31	1.57
33328283--33328316	15	2.3	15	89	0	50	26	8	2	61	1.40
33328487--33328619	69	1.9	69	96	0	248	35	17	6	40	1.76
33331957--33332010	27	2.0	27	92	0	90	24	22	29	24	1.99
33339243--33339279	19	1.9	19	94	0	65	35	5	16	43	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33341757--33341809	26	2.0	26	100	0	106	26	11	22	39	1.88
33345717--33345762	23	2.0	23	86	0	65	26	39	23	10	1.88
33346977--33347032	26	2.2	26	80	6	60	35	25	21	17	1.95
33357535--33357568	16	2.1	16	88	0	50	44	2	0	52	1.16
33359073--33359114	17	2.5	17	84	7	59	35	0	0	64	0.94
33384764--33384845	19	4.4	18	84	3	67	37	9	18	34	1.84
33384766--33384838	19	3.8	19	88	0	110	36	10	16	35	1.84
33384817--33384861	23	2.0	23	86	4	65	37	6	17	37	1.76
33384827--33384871	23	2.0	23	86	4	65	33	4	15	46	1.66
33385042--33385080	19	1.9	19	85	10	51	15	12	5	66	1.41
33385285--33385322	15	2.6	15	83	4	51	26	0	2	71	1.00
33385287--33385337	12	4.0	12	82	12	50	29	0	1	68	1.00
33385301--33385338	12	2.8	13	88	11	51	34	0	0	65	0.93
33385302--33385338	15	2.7	15	88	12	53	35	0	0	64	0.94
33391896--33392649	88	8.6	88	88	0	1078	27	28	24	19	1.99
33392649--33393024	44	8.7	44	85	5	489	27	18	26	27	1.98
33392650--33392978	170	1.9	170	91	1	534	27	18	25	27	1.98
33393823--33393918	21	4.8	19	93	5	147	37	9	15	37	1.80
33393824--33393907	21	4.1	21	96	3	154	38	9	14	38	1.78
33393836--33393941	21	5.0	22	84	11	82	37	7	16	38	1.77
33393824--33393941	40	2.9	40	86	9	150	37	8	15	38	1.78
33393907--33393951	23	2.0	23	86	4	65	33	4	15	46	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33394372--33394411	3	13.3	3	89	10	64	35	0	0	65	0.93
33394372--33394412	13	3.0	14	86	13	59	36	0	0	63	0.95
33399793--33399868	34	2.3	34	95	4	138	22	23	10	43	1.84
33406941--33407009	12	5.8	12	77	6	59	31	8	1	57	1.38
33406949--33407009	15	4.1	15	77	8	61	32	9	1	55	1.42
33410084--33410166	39	2.1	39	90	0	139	27	16	18	37	1.92
33412034--33412436	144	2.7	147	80	9	478	42	3	9	43	1.55
33412296--33412555	118	2.2	119	86	8	354	43	3	11	41	1.55
33415577--33415645	15	4.6	15	78	7	77	59	1	7	31	1.33
33415577--33415653	6	12.8	6	76	5	66	61	1	6	31	1.30
33417163--33417277	44	2.7	43	80	7	128	28	20	20	29	1.98
33417356--33417885	50	10.8	50	66	11	215	24	20	23	31	1.98
33417303--33417860	98	5.7	98	81	8	502	25	20	22	30	1.98
33417468--33417625	49	3.2	49	69	3	147	23	20	24	31	1.98
33417381--33417888	192	2.6	189	82	8	560	24	21	22	32	1.98
33417682--33417864	91	2.0	92	94	1	323	25	20	22	31	1.98
33423204--33423315	30	3.8	29	85	4	134	43	14	9	32	1.78
33429590--33429807	23	9.2	24	70	17	106	43	17	12	26	1.85
33429590--33429806	48	4.6	49	72	18	149	43	17	12	26	1.84
33429621--33429839	71	3.1	70	89	4	305	43	16	12	26	1.84
33429649--33429833	23	7.8	24	75	10	157	46	16	13	23	1.82
33431445--33431495	26	1.9	27	84	4	68	37	3	0	58	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33434754--33434797	22	2.0	23	81	4	54	40	9	9	40	1.68
33434797--33434852	14	3.6	14	74	21	58	10	3	39	46	1.56
33434811--33434862	14	3.0	19	68	26	60	13	7	34	44	1.72
33434795--33434862	33	2.1	33	100	0	136	14	5	35	44	1.70
33435376--33435519	27	5.3	25	75	11	108	25	18	19	36	1.94
33435393--33435519	54	2.4	53	81	6	148	25	16	20	37	1.93
33440545--33440620	28	2.9	28	77	15	90	15	9	19	55	1.67
33445260--33445495	50	4.7	50	84	1	269	25	23	29	21	1.99
33447681--33447717	18	2.1	18	94	0	65	56	8	21	13	1.63
33447845--33447883	18	2.3	16	86	8	51	35	7	20	35	1.81
33450294--33450326	8	4.1	8	88	11	50	48	0	0	51	1.00
33450752--33450809	19	3.0	18	75	12	53	56	3	5	34	1.38
33450761--33450809	10	5.0	10	75	20	50	59	2	4	34	1.28
33450763--33450826	9	6.9	9	75	19	60	60	1	3	34	1.22
33453823--33453885	31	2.0	31	100	0	126	55	6	19	19	1.63
33455868--33455918	24	2.1	25	82	10	61	45	0	1	52	1.12
33457046--33457603	274	2.0	276	90	1	879	41	13	10	34	1.79
33465295--33465333	21	1.9	20	89	5	60	61	0	0	38	0.96
33468566--33468615	21	2.5	20	83	3	64	58	2	6	34	1.34
33473162--33473321	84	1.9	84	87	2	232	44	10	10	34	1.74
33473288--33473487	86	2.3	87	84	7	266	43	11	13	32	1.79
33476826--33476855	12	2.5	12	100	0	60	40	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33476827--33476869	18	2.4	18	92	0	68	37	0	0	62	0.95
33476826--33476886	12	5.5	11	80	9	54	32	0	1	65	1.02
33477623--33477691	30	2.4	29	83	9	79	18	4	14	62	1.48
33479843--33479885	23	1.9	22	90	4	68	55	2	0	41	1.12
33489722--33489767	19	2.4	19	85	0	65	32	15	2	50	1.56
33492097--33492130	3	11.3	3	100	0	68	32	0	0	67	0.91
33493088--33493225	40	3.5	39	71	9	109	38	23	18	19	1.93
33493941--33494011	14	5.0	14	75	8	54	18	1	45	35	1.58
33493976--33494030	22	2.5	21	88	5	74	21	0	40	38	1.54
33494130--33494191	21	2.9	21	77	13	65	24	0	37	38	1.56

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204