genome.fa.s26.2.7.7.80.10.50.1000.182.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Length:  60343961

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  182  of  204  ( 24404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53859606--53859638	16	2.1	16	94	0	57	57	3	0	39	1.14
53859775--53859845	3	23.7	3	86	0	97	60	1	4	33	1.25
53862328--53862366	18	2.2	17	86	13	53	33	0	20	46	1.51
53862591--53862661	23	3.1	23	91	0	115	22	21	23	32	1.98
53874571--53874611	22	1.9	22	90	5	66	65	14	9	9	1.46
53875731--53875793	21	3.0	21	79	4	65	61	4	4	28	1.36
53875945--53875997	21	2.4	21	79	17	63	43	5	3	47	1.45
53877266--53877332	34	1.9	35	88	8	102	34	8	8	47	1.66
53877323--53877397	32	2.3	32	84	4	89	28	8	16	48	1.74
53931656--53931726	35	2.0	35	100	0	142	25	8	8	57	1.56
53936832--53937052	44	4.8	44	71	14	167	30	18	21	28	1.97
53936865--53937042	98	1.8	98	83	2	241	31	18	20	29	1.97
53936977--53937095	44	2.7	44	77	5	107	31	18	21	28	1.97
53936829--53937111	142	2.0	142	94	0	494	32	18	21	27	1.96
53944912--53945034	4	30.8	4	100	0	246	50	24	0	25	1.50
53945727--53945782	16	3.6	16	81	13	80	30	5	3	60	1.36
53945723--53945784	31	2.0	31	100	0	124	29	6	3	61	1.37
53948130--53948171	22	1.9	22	85	0	57	38	2	16	42	1.61
53952983--53953260	108	2.6	107	80	5	280	32	23	17	26	1.97
53954258--53954558	67	4.5	67	85	2	354	36	16	22	23	1.94
53955415--53955447	9	3.8	9	92	4	50	18	3	0	78	0.87
53956356--53956404	25	2.0	25	91	0	80	30	2	6	61	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53956626--53956652	4	6.8	4	100	0	54	51	22	0	25	1.48
53960843--53960905	29	2.1	29	88	2	90	53	14	7	23	1.66
53968477--53968543	34	2.0	34	96	0	125	37	19	8	34	1.83
53979468--53979541	29	2.5	28	78	6	76	36	14	27	21	1.93
53979563--53979658	44	2.2	44	86	0	138	29	21	33	15	1.94
53982022--53982078	25	2.3	23	78	18	62	52	5	0	42	1.24
53982564--53984751	730	3.0	730	97	0	4117	29	18	16	34	1.94
53985716--53985784	30	2.3	30	89	0	102	39	0	24	36	1.56
53988175--53988206	16	2.0	16	93	0	55	34	25	28	12	1.92
53988880--53989005	26	4.9	26	75	8	98	60	6	6	26	1.45
53988927--53989149	26	7.9	27	67	17	98	60	4	5	29	1.40
53989004--53989147	27	5.2	27	72	14	107	59	2	5	31	1.35
53989198--53989254	25	2.2	25	84	12	71	66	1	5	26	1.22
53990832--53990870	19	2.1	19	85	9	53	61	5	2	30	1.31
53991432--53991469	20	1.9	20	89	10	60	18	15	15	50	1.79
54000479--54000518	11	3.6	11	83	9	55	22	32	2	42	1.67
54002364--54002406	18	2.4	18	88	0	59	18	27	9	44	1.80
54002647--54002694	21	2.3	21	82	7	62	35	35	18	10	1.85
54003045--54003091	7	6.7	7	85	0	58	46	31	0	21	1.51
54004115--54004379	125	2.1	126	87	2	390	27	22	17	32	1.96
54005109--54005155	19	2.5	19	83	10	60	40	2	0	57	1.11
54005115--54005166	20	2.5	21	72	18	54	48	1	0	50	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54006508--54006571	6	10.7	6	93	0	110	35	15	48	0	1.46
54009863--54009912	23	2.2	23	81	0	55	10	12	4	74	1.21
54022073--54022098	11	2.4	11	100	0	52	38	7	0	53	1.30
54022063--54022150	42	2.2	40	89	4	131	29	3	1	65	1.16
54022084--54022156	31	2.3	31	86	11	96	31	2	1	64	1.16
54022623--54022686	19	3.3	20	74	20	64	34	0	0	65	0.93
54023783--54023823	3	13.7	3	100	0	82	34	0	0	65	0.93
54024105--54024234	11	12.4	11	71	19	91	37	2	0	59	1.16
54024094--54024166	31	2.4	30	88	4	110	39	1	1	57	1.16
54029942--54029981	17	2.4	17	87	4	55	60	0	0	40	0.97
54029953--54029995	17	2.5	18	85	7	54	69	0	0	30	0.88
54030210--54030255	21	2.2	21	92	3	76	69	15	2	13	1.28
54035311--54035366	13	4.5	13	76	13	64	50	10	1	37	1.48
54035324--54035375	23	2.3	23	93	0	86	50	9	1	38	1.46
54035324--54035388	23	2.8	23	83	4	69	52	9	1	36	1.43
54036879--54036912	15	2.4	14	90	5	50	70	0	5	23	1.09
54039761--54039797	19	1.9	19	88	0	56	64	2	18	13	1.39
54039920--54039944	13	1.9	13	100	0	50	36	0	0	64	0.94
54041515--54041707	50	3.9	50	97	0	350	20	32	22	24	1.98
54048376--54048619	50	4.9	50	92	0	398	20	30	22	26	1.98
54056377--54056415	20	2.0	20	84	0	51	28	12	7	51	1.67
54060652--54060745	48	2.0	48	85	8	129	41	27	11	19	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54063164--54063257	48	2.0	48	85	8	129	41	27	11	19	1.86
54088075--54088144	31	2.3	31	82	4	90	40	21	8	30	1.83
54088098--54088158	31	2.0	31	83	0	77	39	21	11	27	1.88
54088343--54088369	14	1.9	14	100	0	54	29	14	18	37	1.91
54089955--54090005	22	2.3	23	77	16	61	31	1	7	58	1.37
54090669--54090715	24	2.0	24	91	0	76	27	19	12	40	1.88
54095628--54095675	18	2.7	18	80	3	62	33	2	4	60	1.27
54096687--54096716	14	2.1	14	100	0	60	33	6	0	60	1.23
54098266--54098311	21	2.2	21	77	11	51	50	10	0	39	1.38
54098248--54098366	63	1.9	62	91	1	193	51	11	4	32	1.58
54101133--54101170	20	1.9	20	88	0	58	39	7	31	21	1.82
54102429--54102487	29	2.0	30	90	3	93	32	0	11	55	1.36
54104537--54104564	3	9.3	3	100	0	56	32	32	35	0	1.58
54111510--54111551	21	2.0	22	85	4	59	47	7	0	45	1.30
54113679--54113727	17	2.9	17	82	8	55	26	6	0	67	1.14
54119433--54119619	51	3.7	50	83	4	250	31	28	17	22	1.96
54119431--54119617	101	1.8	101	93	3	322	31	29	17	22	1.96
54120148--54120184	16	2.3	16	100	0	74	24	0	0	75	0.80
54122042--54122183	57	2.4	57	87	8	187	28	21	28	22	1.99
54127125--54127186	30	2.0	30	81	3	79	40	17	17	24	1.91
54129527--54129557	11	2.8	11	90	0	53	32	0	0	67	0.91
54129527--54129572	22	2.1	22	84	8	58	36	0	2	60	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54132168--54132193	6	4.3	6	100	0	52	30	15	0	53	1.42
54132567--54132603	18	2.1	18	89	0	56	59	8	0	32	1.27
54133381--54133405	12	2.1	12	100	0	50	24	36	24	16	1.94
54133566--54133623	9	6.4	9	83	0	80	43	20	12	24	1.86
54133726--54133769	18	2.4	18	88	0	61	13	2	43	40	1.57
54140497--54140555	27	2.2	27	96	3	111	27	15	16	40	1.89
54142753--54142823	4	17.2	4	73	21	58	2	18	5	73	1.16
54142759--54142819	27	2.3	27	79	0	68	3	16	6	73	1.17
54142755--54142826	20	3.8	18	73	18	65	2	16	5	75	1.12
54151190--54151252	30	2.1	31	93	3	110	36	9	17	36	1.82
54155847--54155909	30	2.1	31	93	3	110	36	9	17	36	1.82
54161892--54161927	16	2.2	16	95	0	63	27	0	33	38	1.57
54162118--54162159	15	2.7	16	82	14	52	52	2	0	45	1.13
54162127--54162168	15	2.9	15	82	10	52	52	0	0	47	1.00
54183179--54183216	14	2.6	14	80	19	51	57	7	0	34	1.28
54196177--54196415	50	4.7	50	81	4	221	26	20	29	23	1.99
54197494--54197580	19	4.3	19	81	13	102	35	6	13	43	1.71
54197519--54197605	23	4.0	23	79	13	103	39	3	16	41	1.65
54197513--54197605	42	2.2	42	96	0	168	38	4	15	41	1.66
54197498--54197608	22	5.2	21	78	15	95	38	4	15	41	1.67
54197780--54197818	19	2.0	21	85	10	55	15	10	5	69	1.34
54198039--54198073	3	11.3	3	93	6	61	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54201589--54201697	54	2.0	54	94	0	191	19	13	11	55	1.67
54201864--54201917	26	2.0	26	82	10	63	61	7	0	31	1.24
54207975--54208020	22	2.1	22	84	8	58	52	2	36	8	1.45
54209689--54209880	100	1.9	100	86	0	276	32	17	13	36	1.88
54216795--54216863	11	6.4	11	73	20	56	36	2	0	60	1.11
54216804--54216878	31	2.4	31	82	13	91	37	2	0	60	1.11
54216778--54216811	17	2.0	17	94	0	59	38	0	0	61	0.96
54216846--54216885	21	1.9	21	89	0	62	37	2	0	60	1.11
54217886--54217933	22	2.1	24	88	7	73	68	4	0	27	1.07
54221045--54221656	306	2.0	306	100	0	1224	26	16	22	34	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204