genome.fa.s26.2.7.7.80.10.50.1000.24.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Length:  60343961

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  24  of  204  ( 24404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6906004--6906052	18	2.7	18	84	6	64	59	2	8	30	1.38
6907732--6907776	14	3.1	14	78	6	54	64	4	4	26	1.32
6910923--6911008	36	2.4	36	98	0	163	26	19	27	25	1.99
6912529--6912564	18	2.0	18	100	0	72	22	22	22	33	1.97
6914881--6915039	42	3.7	42	76	11	149	33	11	20	35	1.88
6914921--6915024	47	2.2	49	85	3	140	35	10	19	34	1.86
6922785--6922819	17	2.1	17	89	5	54	48	0	8	42	1.33
6922783--6922822	16	2.5	15	84	11	53	42	0	7	50	1.30
6922804--6922953	75	1.9	80	84	9	204	45	3	5	46	1.42
6924588--6924621	17	2.0	17	94	0	59	44	11	0	44	1.40
6925761--6925825	23	3.0	21	78	10	69	41	24	18	15	1.89
6926923--6926986	26	2.4	27	94	5	112	40	10	0	48	1.38
6927678--6927707	15	2.0	15	100	0	60	40	0	13	46	1.43
6927993--6928057	27	2.4	28	97	2	123	49	0	10	40	1.38
6931069--6931100	10	3.2	10	95	0	55	43	9	0	46	1.35
6931259--6931303	22	2.0	22	91	0	72	17	22	4	55	1.60
6933657--6933721	25	2.6	26	74	16	73	30	21	26	21	1.98
6937151--6937257	37	2.9	37	80	12	105	42	11	21	24	1.85
6937562--6937599	15	2.4	16	91	4	60	50	5	0	44	1.24
6937981--6938040	9	6.2	9	76	17	50	70	3	3	23	1.18
6945514--6945558	17	2.7	16	82	6	54	40	4	0	55	1.20
6951143--6951168	13	2.0	13	100	0	52	23	7	15	53	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6953014--6953047	16	2.1	16	88	0	50	17	38	20	23	1.93
6956930--6957060	21	6.3	20	76	10	88	45	14	22	18	1.85
6956944--6957060	21	5.6	21	83	0	126	44	14	22	18	1.86
6956949--6957061	42	2.7	42	87	2	156	46	14	21	18	1.84
6958710--6958749	18	2.2	19	90	4	64	17	17	17	47	1.83
6963297--6963373	36	2.3	31	82	13	91	33	20	20	24	1.97
6965616--6965816	9	23.6	9	65	20	67	33	0	15	49	1.52
6965589--6965818	36	6.4	36	83	11	305	33	0	15	49	1.51
6965696--6965744	14	3.3	14	81	15	62	32	0	16	51	1.45
6965589--6965807	67	3.2	68	92	3	370	33	0	15	49	1.51
6965752--6965950	98	2.1	92	87	9	280	31	3	14	51	1.58
6965589--6965905	137	2.4	129	81	15	330	33	1	15	49	1.55
6965847--6965914	9	7.6	9	77	6	75	35	0	17	47	1.48
6966744--6966789	13	3.5	13	75	0	56	10	15	4	69	1.32
6966742--6966792	26	2.0	26	100	0	102	13	15	3	66	1.39
6966855--6967213	72	5.1	71	74	6	210	45	12	6	34	1.69
6968587--6968855	109	2.5	106	87	8	382	18	22	27	31	1.97
6968688--6968740	27	2.0	27	100	0	106	18	24	30	26	1.98
6968715--6968933	77	2.8	77	89	4	323	21	21	26	31	1.98
6971040--6971080	13	3.2	13	86	10	57	0	26	0	73	0.84
6974338--6974415	39	2.0	39	87	5	113	15	20	41	23	1.90
6977331--6977390	30	2.0	30	90	0	93	28	18	10	43	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6978232--6978261	13	2.3	13	100	0	60	33	0	26	40	1.57
6982619--6982662	21	2.1	21	100	0	88	45	9	13	31	1.75
6990400--6990933	40	12.8	41	80	10	588	22	20	23	32	1.98
6990374--6990930	84	6.7	84	89	4	780	22	20	24	33	1.97
6990401--6990930	170	3.2	166	91	4	795	22	20	23	32	1.98
6990400--6990943	124	4.4	124	83	9	696	22	20	24	33	1.97
7003896--7003930	16	2.2	16	89	0	52	82	0	8	8	0.83
7007490--7007569	33	2.4	34	74	19	87	53	5	3	37	1.41
7014211--7014245	18	1.9	18	88	0	52	22	2	2	71	1.13
7014293--7014353	9	6.4	10	76	16	51	31	4	1	62	1.26
7014293--7014382	19	4.8	19	76	10	71	31	4	1	63	1.21
7020464--7020494	15	2.1	15	100	0	62	35	19	0	45	1.51
7022524--7022550	11	2.5	11	100	0	54	22	7	18	51	1.70
7023945--7024139	93	2.1	92	88	4	286	44	4	4	47	1.41
7024172--7024205	17	2.0	17	94	0	59	44	5	0	50	1.26
7024172--7024210	17	2.4	16	87	8	53	43	5	0	51	1.24
7024176--7024215	17	2.3	18	83	12	57	47	5	0	47	1.24
7024295--7024429	15	8.9	15	67	24	70	42	2	3	51	1.32
7024171--7024389	120	1.8	119	89	6	345	40	3	5	50	1.44
7024397--7024438	15	2.7	16	82	14	52	45	0	2	52	1.13
7024388--7024685	154	1.9	156	95	2	546	47	5	3	44	1.41
7024538--7024572	18	2.0	17	88	5	52	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7024805--7024843	16	2.4	16	86	0	51	28	33	2	35	1.71
7024818--7024874	16	3.6	16	95	0	87	33	36	0	29	1.58
7027453--7027493	20	1.9	22	85	14	59	60	0	0	39	0.96
7027496--7027520	10	2.5	10	100	0	50	56	0	0	44	0.99
7027464--7027529	27	2.4	27	82	10	80	65	0	0	34	0.93
7027460--7027533	35	2.1	37	87	5	107	67	0	0	32	0.91
7030380--7030419	21	1.9	21	100	0	80	45	20	10	25	1.81
7030392--7030504	58	1.9	58	91	3	183	30	21	6	42	1.77
7032429--7032475	24	2.0	24	83	8	60	48	0	34	17	1.47
7038185--7038248	17	3.5	19	78	16	73	50	0	4	45	1.22
7038208--7038256	25	2.0	25	84	8	64	53	0	4	42	1.20
7045979--7046108	57	2.3	57	100	0	260	43	13	20	21	1.86
7046286--7046330	21	2.1	20	84	12	54	60	11	6	22	1.54
7057802--7057853	24	2.2	24	89	0	77	55	9	1	32	1.43
7059767--7059818	24	2.2	24	89	0	77	55	9	1	32	1.43
7060220--7060274	16	3.5	16	77	18	53	65	1	12	20	1.35
7060439--7060640	65	3.2	65	80	11	258	63	2	6	27	1.31
7060497--7060617	57	2.1	57	90	1	188	63	1	5	28	1.27
7062102--7062624	44	11.8	44	83	2	532	30	20	17	31	1.95
7065486--7065760	41	6.7	41	93	0	433	28	21	28	22	1.99
7068946--7069028	27	3.3	25	77	11	89	20	26	20	32	1.97
7069012--7069076	24	2.7	24	85	0	94	16	29	18	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7068945--7069087	24	5.8	24	69	16	71	18	25	19	35	1.95
7068960--7069093	48	2.7	49	75	6	128	18	26	18	36	1.94
7071316--7071358	21	2.0	21	100	0	86	9	18	27	44	1.80
7075671--7075855	101	1.8	102	89	3	293	23	18	27	30	1.98
7075671--7075801	50	2.6	50	84	3	165	22	19	27	30	1.98
7075668--7075853	51	3.7	50	78	4	212	23	18	27	30	1.97
7075864--7075952	45	2.0	45	93	0	151	24	14	24	35	1.93
7079394--7079433	20	2.0	20	86	13	57	55	17	0	27	1.43
7082869--7082913	16	2.8	15	83	12	54	62	2	13	22	1.42
7083081--7083277	65	3.0	65	87	9	281	62	2	5	29	1.27
7090248--7090357	41	2.7	42	92	2	188	30	20	25	23	1.99
7090360--7090505	42	3.5	42	77	6	134	21	15	25	37	1.92
7090360--7090505	43	3.5	43	77	8	131	21	15	25	37	1.92
7093000--7093145	43	3.5	42	82	8	172	34	26	17	21	1.95
7092996--7093145	42	3.6	43	82	7	182	34	26	18	21	1.96
7093125--7093174	26	1.9	26	91	0	82	28	28	20	24	1.99
7093148--7093298	41	3.7	41	93	0	248	23	23	20	33	1.97
7099898--7099937	14	2.9	14	80	0	53	45	7	17	30	1.76
7100508--7100543	18	1.9	18	88	5	54	58	2	0	38	1.13
7107072--7107105	18	1.9	18	88	5	52	55	5	8	29	1.54
7109931--7109963	17	2.0	17	94	5	59	21	6	12	60	1.53
7112149--7112234	42	2.0	42	84	4	109	44	12	5	37	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7112674--7112753	30	2.7	29	78	14	83	46	5	7	41	1.54
7113083--7113116	16	2.1	16	88	0	50	47	2	2	47	1.32
7128353--7129388	198	5.2	199	84	4	1238	31	22	21	25	1.98
7128515--7129586	248	4.3	245	81	6	1318	31	22	21	24	1.98
7128353--7129383	298	3.5	297	86	4	1357	31	21	21	24	1.98
7128353--7129623	50	25.6	50	75	5	1083	32	22	20	24	1.98
7134261--7134333	19	3.8	19	96	0	137	36	9	16	36	1.81
7134251--7134340	38	2.4	36	89	7	137	38	8	16	35	1.80
7134261--7134359	19	4.9	20	87	6	105	35	8	18	38	1.80
7135020--7135046	12	2.2	12	100	0	54	18	0	0	81	0.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204