genome.fa.s26.2.7.7.80.10.50.1000.193.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Length:  60343961

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  193  of  204  ( 24404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57240085--57240123	14	2.9	14	88	11	55	84	0	15	0	0.62
57241249--57241278	12	2.5	12	94	0	51	6	30	40	23	1.80
57242883--57242908	8	3.2	8	100	0	52	11	34	0	53	1.37
57243325--57243350	5	5.2	5	100	0	52	23	19	19	38	1.93
57245054--57245094	13	2.9	14	82	10	57	31	0	0	68	0.90
57249860--57249929	33	2.1	34	86	2	97	51	2	8	37	1.47
57250015--57250051	6	6.7	6	82	17	53	86	0	0	13	0.57
57250020--57250053	15	2.3	15	100	0	68	88	0	0	11	0.52
57250119--57250194	3	25.0	3	77	10	75	60	2	3	32	1.29
57250095--57250149	26	2.1	26	80	12	60	56	1	5	36	1.33
57251611--57251670	31	2.0	30	83	9	77	66	0	6	26	1.16
57253779--57253821	22	2.0	21	86	4	59	72	18	0	9	1.11
57253937--57254112	44	4.0	44	80	1	210	30	21	21	26	1.98
57253943--57254143	44	4.6	43	73	12	167	30	20	21	27	1.98
57253955--57254143	88	2.1	89	80	10	210	30	20	22	26	1.98
57256537--57256593	14	3.9	14	75	13	53	68	1	12	17	1.29
57256636--57256661	11	2.4	11	100	0	52	50	7	42	0	1.31
57257322--57257358	3	12.7	3	88	5	58	35	2	0	62	1.10
57266282--57266459	68	2.6	67	83	4	196	30	14	21	33	1.93
57265987--57266895	189	4.8	191	96	2	1677	30	13	20	35	1.91
57265987--57266895	381	2.4	376	96	2	1681	30	13	20	35	1.91
57266812--57267016	54	3.5	54	67	16	158	28	14	20	36	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57266730--57267052	122	2.6	122	92	2	522	27	14	21	37	1.92
57267036--57267068	15	2.1	16	88	5	50	18	12	6	63	1.48
57266975--57267225	87	2.9	88	82	11	302	26	18	18	36	1.94
57267210--57267257	16	3.3	16	78	18	52	16	12	8	62	1.53
57267328--57267544	54	4.1	55	89	7	331	28	16	17	37	1.92
57267336--57267544	50	4.0	50	90	5	292	28	16	18	36	1.92
57267813--57267916	30	3.4	30	83	2	127	29	21	3	45	1.69
57268307--57268378	3	24.3	3	86	8	94	72	0	27	0	0.85
57268307--57268394	6	14.2	6	77	15	63	75	0	23	1	0.88
57268367--57268420	13	4.2	13	77	15	58	83	0	9	7	0.82
57268309--57268407	20	4.8	20	80	13	78	76	0	21	2	0.88
57268503--57268548	22	2.1	22	83	0	56	78	15	6	0	0.95
57268492--57268522	6	5.3	6	96	3	55	87	12	0	0	0.55
57268681--57268759	15	5.2	14	74	15	68	79	0	20	0	0.73
57268681--57268756	10	7.1	11	72	21	56	80	0	19	0	0.72
57268693--57268756	13	4.8	13	73	11	58	79	0	20	0	0.73
57268686--57268746	31	1.9	30	87	9	86	78	0	21	0	0.75
57268686--57268759	33	2.2	32	83	9	87	79	0	20	0	0.73
57268686--57268759	14	5.1	14	72	18	62	79	0	20	0	0.73
57268893--57268933	21	2.0	21	85	0	55	26	0	2	70	0.99
57269233--57269452	18	12.4	18	67	15	104	30	12	11	45	1.77
57269243--57269327	17	4.7	18	68	18	52	29	16	10	43	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57269252--57269340	19	4.8	19	72	9	67	29	16	10	43	1.81
57269352--57269464	33	3.4	31	81	12	118	30	9	12	46	1.74
57269401--57269459	17	3.5	17	75	13	68	27	8	11	52	1.66
57269401--57269459	15	3.6	15	77	13	55	27	8	11	52	1.66
57269370--57269466	17	5.8	16	70	11	52	34	9	12	44	1.74
57271592--57271638	23	2.0	23	100	0	94	44	17	17	21	1.86
57272046--57272147	30	3.4	31	81	5	113	29	21	3	45	1.70
57272511--57272549	3	14.3	3	84	15	50	71	0	28	0	0.86
57272511--57272553	13	3.3	13	83	9	61	72	0	27	0	0.85
57272522--57272559	10	3.8	10	86	6	51	78	0	21	0	0.74
57272656--57272698	19	2.3	19	79	0	50	76	18	2	2	1.00
57272658--57272731	32	2.3	31	84	11	87	71	20	6	1	1.16
57272673--57272746	16	4.6	16	78	8	71	67	20	10	1	1.28
57272705--57272746	15	2.8	14	86	13	57	66	19	14	0	1.25
57272856--57272949	11	8.9	11	76	20	85	80	0	18	1	0.76
57272856--57272950	21	4.7	21	79	8	117	80	0	18	1	0.78
57272866--57272945	9	9.2	9	76	10	69	82	0	16	1	0.73
57272866--57272944	8	9.2	8	78	19	72	82	0	16	1	0.74
57273496--57273537	22	2.0	22	86	9	61	52	16	4	26	1.63
57273533--57273695	17	9.4	17	76	9	150	30	12	9	47	1.73
57273533--57273695	35	4.7	34	78	8	159	30	12	9	47	1.73
57279616--57279641	13	2.0	13	100	0	52	53	0	46	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57279619--57279658	16	2.6	16	88	4	55	65	0	35	0	0.93
57279703--57279730	5	5.6	5	100	0	56	17	60	21	0	1.36
57279882--57279946	19	3.4	19	76	23	73	78	0	21	0	0.75
57279884--57279960	24	3.2	24	80	14	88	77	0	22	0	0.76
57280119--57280164	21	2.2	21	84	3	58	34	2	0	63	1.07
57280467--57280759	18	15.8	18	73	16	201	36	14	8	40	1.77
57280473--57280724	39	6.7	38	86	5	311	37	14	9	38	1.78
57280473--57280759	39	7.7	36	83	10	278	37	14	8	39	1.77
57280512--57280793	55	5.1	54	75	12	218	36	14	9	40	1.78
57287905--57288230	46	7.6	45	80	14	377	34	14	22	28	1.93
57287941--57288095	36	4.0	36	79	15	184	36	14	20	28	1.92
57287905--57288230	82	3.9	82	86	8	451	34	14	22	28	1.93
57287905--57288230	128	2.6	126	76	19	375	34	14	22	28	1.93
57290278--57291536	80	15.8	80	87	5	1705	28	16	19	35	1.94
57290278--57291536	159	7.9	160	87	5	1705	28	16	19	35	1.94
57291746--57291883	30	4.6	30	81	8	147	32	21	4	41	1.73
57291746--57291883	60	2.3	60	83	5	163	32	21	4	41	1.73
57293067--57293314	19	13.3	19	71	14	110	37	12	7	41	1.72
57293083--57293186	20	5.3	20	70	13	81	45	11	5	37	1.65
57293077--57293276	39	5.3	39	86	5	241	37	13	8	40	1.75
57293183--57293335	18	8.6	18	71	12	100	32	15	8	43	1.76
57293068--57293317	78	3.4	73	83	11	253	37	13	7	42	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57293077--57293348	35	7.3	36	76	13	171	36	13	7	42	1.73
57293118--57293348	53	4.2	55	73	9	150	35	13	7	42	1.74
57293077--57293329	72	3.4	72	81	9	226	36	13	7	42	1.73
57293768--57293920	26	5.7	26	72	6	108	60	3	6	29	1.40
57298467--57298513	23	2.0	23	100	0	94	21	17	17	44	1.86
57298810--57298839	2	15.0	2	92	0	51	46	0	0	53	1.00
57300642--57300694	15	3.3	15	73	14	52	41	9	7	41	1.66
57300769--57300810	19	2.2	20	86	4	59	45	7	19	28	1.76
57300781--57300823	20	2.2	20	87	8	61	37	6	16	39	1.75
57300699--57300878	18	9.9	18	69	13	104	44	12	13	29	1.81
57301353--57301426	14	5.1	14	73	19	62	0	20	0	79	0.73
57301353--57301431	15	5.2	15	75	15	74	0	20	0	79	0.73
57301362--57301431	11	6.9	10	81	13	72	0	20	0	80	0.72
57301589--57301619	6	5.3	6	96	3	55	0	0	12	87	0.55
57301564--57301625	21	2.9	21	83	7	63	0	4	16	79	0.90
57301706--57301809	7	14.0	7	87	6	86	1	21	0	76	0.87
57301702--57301821	6	19.0	6	88	7	71	1	22	0	75	0.89
57301749--57301823	3	25.3	3	94	5	127	0	30	0	69	0.89
57302216--57302319	30	3.4	30	83	2	118	45	3	21	29	1.69
57302590--57302809	54	4.1	55	86	10	319	36	16	16	30	1.91
57302788--57302822	14	2.5	14	90	0	52	60	2	17	20	1.49
57302880--57302930	16	3.5	15	80	17	63	58	7	11	21	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57303196--57303283	45	2.0	45	93	0	149	34	31	14	19	1.92
57303240--57303383	72	2.0	72	91	2	236	34	22	14	29	1.93
57303343--57303430	43	2.0	43	95	0	158	35	20	14	29	1.93
57303443--57304002	75	7.4	75	87	6	706	31	20	17	30	1.96
57303443--57304001	306	1.9	296	86	4	805	31	20	17	30	1.96
57303443--57304015	147	3.8	148	85	6	758	32	20	16	30	1.95
57304019--57304195	72	2.5	70	85	4	214	35	22	14	28	1.93
57306392--57306457	11	6.4	10	79	11	71	0	12	4	83	0.79
57306413--57306458	5	9.2	5	80	17	51	0	15	2	82	0.76
57306404--57306457	25	2.2	25	86	6	74	0	12	3	83	0.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204