genome.fa.s26.2.7.7.80.10.50.1000.146.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Length:  60343961

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  146  of  204  ( 24404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44536467--44536703	36	6.0	36	80	18	267	35	15	19	29	1.93
44536431--44536748	82	3.9	82	82	15	415	35	14	20	29	1.93
44536550--44536791	91	3.0	76	80	17	228	35	16	19	29	1.93
44536468--44536702	118	2.0	118	96	0	434	36	15	18	29	1.92
44541865--44541903	20	2.0	20	84	0	51	38	10	12	38	1.78
44544276--44544727	47	9.6	47	94	0	760	32	8	29	29	1.86
44544530--44544605	22	3.3	22	64	10	62	30	10	31	27	1.90
44544846--44544923	36	2.1	37	88	2	113	24	17	30	26	1.97
44546134--44546515	159	2.4	159	93	0	638	23	21	29	26	1.99
44546134--44546518	199	1.9	200	91	0	637	23	21	29	25	1.99
44546134--44546518	40	9.6	40	93	0	637	23	21	29	25	1.99
44550196--44550693	47	10.6	47	96	1	881	32	8	30	29	1.86
44550196--44550693	234	2.1	236	95	1	883	32	8	30	29	1.86
44550812--44550890	37	2.1	37	88	0	113	24	17	31	26	1.97
44551654--44551878	18	12.2	18	77	10	206	44	10	14	30	1.78
44551707--44551750	22	2.0	22	86	0	61	38	9	11	40	1.73
44551654--44551879	54	4.1	55	82	5	285	44	10	14	30	1.78
44551921--44551997	17	4.2	18	73	15	68	36	11	7	44	1.70
44551922--44551997	39	2.0	39	84	2	100	36	11	7	43	1.71
44551921--44551980	21	3.1	19	72	11	52	35	11	6	46	1.67
44551960--44552028	16	3.9	18	74	11	63	44	8	14	31	1.75
44552162--44552223	21	3.0	21	79	11	58	37	6	14	41	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44552578--44552657	19	4.3	18	74	13	72	0	16	1	82	0.73
44552577--44552641	9	7.0	9	83	11	69	0	15	1	83	0.73
44552588--44552656	35	2.1	35	84	12	94	0	15	1	82	0.74
44552625--44552659	15	2.4	15	90	4	54	0	20	0	80	0.72
44552774--44552815	7	6.4	7	78	15	54	0	11	2	85	0.68
44552775--44552863	6	14.3	6	70	13	56	0	24	1	74	0.89
44552826--44552868	12	3.5	12	77	3	50	0	32	0	67	0.91
44552775--44552868	18	5.8	17	70	22	67	0	26	1	72	0.92
44553104--44553141	18	1.9	19	85	15	51	2	10	7	78	1.04
44553119--44553160	15	2.6	17	85	14	63	2	9	7	80	0.97
44553104--44553143	20	2.0	21	85	5	55	2	10	7	80	1.00
44553320--44553524	30	6.9	30	83	6	204	39	3	20	35	1.72
44553334--44553523	89	2.1	88	84	7	242	41	3	20	35	1.68
44553319--44553523	59	3.5	57	82	7	239	40	3	20	35	1.71
44554024--44554058	13	2.8	12	83	8	52	68	0	0	31	0.90
44569482--44569603	43	2.9	44	75	10	128	32	23	18	25	1.97
44569611--44569660	26	1.9	26	92	8	84	30	30	20	20	1.97
44576327--44576392	31	2.1	31	94	0	114	22	25	25	25	2.00
44577079--44577181	28	3.7	28	88	2	145	30	23	25	21	1.99
44577560--44577954	27	14.7	26	80	6	333	19	18	20	41	1.91
44577540--44577965	81	5.3	80	81	2	404	20	17	20	41	1.90
44582623--44582709	43	2.0	43	95	0	156	36	33	13	16	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44585319--44585367	25	2.0	25	83	0	62	34	18	12	34	1.88
44592253--44592287	18	1.9	18	88	0	52	25	14	11	48	1.77
44594901--44594987	43	2.0	43	88	0	129	43	20	5	29	1.75
44594943--44595019	39	2.0	39	82	10	95	44	19	2	33	1.65
44600321--44600345	13	1.9	13	100	0	50	8	8	0	84	0.79
44603915--44603958	18	2.6	18	82	7	56	45	6	0	47	1.29
44604198--44604228	7	4.4	7	91	0	53	74	3	0	22	0.96
44606381--44606517	40	3.5	40	89	3	206	39	21	19	18	1.93
44607026--44607068	14	3.0	14	86	3	50	30	2	30	37	1.70
44607212--44607263	7	7.6	7	82	8	63	15	0	51	32	1.43
44607212--44607276	14	4.7	14	75	3	60	18	0	47	33	1.49
44607238--44607301	21	3.0	21	78	13	60	25	0	37	37	1.56
44607390--44607421	7	4.6	7	92	0	55	18	0	56	25	1.42
44608211--44608243	12	2.8	12	86	13	50	15	0	3	81	0.80
44617381--44617411	5	6.2	5	92	0	53	19	19	16	45	1.86
44622242--44622312	37	1.9	37	91	0	115	49	2	1	46	1.25
44628578--44628850	97	2.9	93	83	8	284	40	2	15	41	1.61
44628635--44628856	97	2.3	97	86	5	308	40	2	18	38	1.63
44628928--44629176	126	2.0	126	85	3	340	36	13	20	30	1.91
44633042--44633141	36	2.8	38	86	6	104	21	9	22	48	1.77
44635701--44635776	31	2.5	31	86	0	98	50	17	14	18	1.79
44638576--44639709	106	10.6	106	74	13	724	34	18	16	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44638814--44639558	213	3.5	210	81	9	667	34	18	17	29	1.94
44641094--44641122	12	2.3	13	94	5	51	24	3	6	65	1.33
44644406--44644513	54	2.0	54	96	0	198	28	11	16	43	1.82
44644422--44644506	27	3.2	26	65	6	62	27	14	16	42	1.86
44647148--44647172	3	8.3	3	100	0	50	32	0	0	68	0.90
44647297--44647343	24	2.0	24	84	8	62	42	0	4	53	1.20
44647363--44647399	8	4.5	8	86	6	56	75	2	13	8	1.13
44647368--44647402	17	2.1	17	100	0	70	77	5	11	5	1.12
44649927--44650013	31	2.8	31	87	0	120	47	14	17	20	1.83
44651982--44652015	15	2.2	16	94	5	61	20	58	2	17	1.51
44651986--44652018	5	6.6	5	100	0	66	18	60	0	21	1.36
44676426--44676622	98	2.0	98	94	0	349	38	24	9	27	1.86
44677287--44677339	25	2.2	24	90	6	81	58	3	7	30	1.43
44678106--44678218	19	5.8	19	85	4	163	34	15	10	38	1.83
44678106--44678217	40	2.8	40	93	2	183	34	15	10	39	1.82
44678778--44678817	15	2.7	15	80	0	53	55	5	22	17	1.61
44691737--44691807	19	3.6	20	88	7	101	36	12	12	38	1.82
44700478--44701152	88	7.7	88	88	0	888	27	21	25	25	1.99
44701085--44701388	44	6.9	44	78	8	278	30	13	23	32	1.93
44700878--44701388	88	5.8	87	79	5	283	28	17	24	28	1.97
44701089--44701419	177	1.9	177	89	1	511	32	13	24	30	1.93
44701087--44701389	133	2.3	133	82	3	369	30	13	23	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44701303--44701532	118	1.9	119	85	3	320	32	15	25	26	1.95
44701880--44701957	21	3.7	21	73	17	72	35	7	16	39	1.78
44705186--44705215	15	2.0	15	93	0	51	76	6	0	16	0.99
44705681--44705788	55	2.0	55	92	0	180	44	12	3	39	1.59
44711601--44711625	13	1.9	13	100	0	50	60	8	0	32	1.26
44711680--44711832	41	4.0	41	69	16	98	52	11	1	33	1.46
44711614--44712220	145	4.3	143	80	9	676	49	13	2	34	1.56
44711614--44712216	144	4.3	143	80	9	652	49	13	2	34	1.56
44711937--44712012	33	2.3	33	81	2	82	47	13	5	34	1.65
44711949--44712215	129	2.0	131	84	3	351	47	15	3	33	1.62
44715091--44715142	26	2.0	26	92	0	86	59	5	9	25	1.51
44716127--44716159	15	2.2	15	89	10	50	69	0	0	30	0.88
44730952--44730981	14	2.1	15	93	6	53	30	0	6	63	1.20
44736011--44736044	16	2.1	16	88	5	50	29	14	11	44	1.81
44743142--44743203	30	2.1	30	84	0	79	48	9	6	35	1.62
44745257--44745294	19	2.0	19	90	10	60	21	39	0	39	1.53
44757101--44757125	13	1.9	13	100	0	50	16	36	24	24	1.94
44761662--44761799	39	3.5	39	82	3	136	45	21	5	28	1.72
44764817--44764871	28	2.0	28	88	0	83	23	12	20	43	1.86
44774549--44774614	18	3.5	18	78	14	62	60	6	1	31	1.30
44777227--44777296	24	2.8	24	79	8	77	32	15	11	40	1.83
44779321--44779354	16	2.1	16	88	5	50	52	5	11	29	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44784450--44784523	23	3.2	22	90	7	112	27	27	20	25	1.99
44790032--44790258	51	4.5	52	72	10	155	25	14	28	30	1.95
44790064--44790262	51	4.0	48	75	7	182	24	16	28	31	1.96
44795105--44795132	10	2.8	10	100	0	56	78	0	10	10	0.96
44800934--44800967	17	1.9	18	88	5	52	35	17	8	38	1.81
44808325--44808403	41	2.0	40	84	2	104	27	22	7	41	1.81
44809260--44809297	20	1.9	20	88	0	58	36	10	0	52	1.36
44823874--44823943	27	2.6	27	95	2	113	31	28	12	27	1.93
44823874--44823971	28	3.5	28	90	2	135	31	28	13	26	1.94
44828147--44828254	24	4.5	24	79	0	99	27	8	19	44	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204