genome.fa.s26.2.7.7.80.10.50.1000.38.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Length:  60343961

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  38  of  204  ( 24404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10965776--10965945	41	4.2	39	69	16	121	21	17	27	33	1.96
10965750--10965932	82	2.2	81	80	9	210	21	15	26	36	1.94
10965776--10965927	41	3.7	41	71	11	123	23	17	26	32	1.96
10966941--10967013	15	4.7	15	91	5	119	24	1	39	34	1.64
10966941--10967013	31	2.4	31	95	0	128	24	1	39	34	1.64
10972400--10972570	66	2.6	65	85	4	209	41	18	25	14	1.88
10972552--10972653	42	2.4	42	88	0	141	34	15	43	6	1.74
10972552--10972653	21	4.9	21	81	0	114	34	15	43	6	1.74
10972978--10973166	43	4.4	43	81	4	184	25	17	30	25	1.98
10972977--10973148	86	2.0	86	86	0	236	25	16	30	27	1.97
10973002--10973184	86	2.1	86	82	0	213	24	18	30	27	1.98
10973002--10973290	43	6.7	43	73	9	135	23	21	28	26	1.99
10973667--10973855	50	3.7	50	81	5	191	26	21	27	24	1.99
10993764--10994009	50	4.8	50	77	6	201	29	20	26	23	1.99
10998586--10998686	45	2.2	45	85	0	139	14	4	23	56	1.58
10998601--10998699	45	2.2	45	85	0	126	19	4	18	58	1.54
11000682--11000826	51	2.9	51	81	7	170	24	15	28	31	1.95
11015859--11015886	3	9.3	3	100	0	56	32	0	0	67	0.91
11020359--11020436	6	12.8	6	76	20	74	83	0	15	1	0.72
11020362--11020434	17	3.9	18	81	16	87	83	0	15	1	0.71
11020360--11020435	14	5.4	14	80	10	75	84	0	14	1	0.69
11020362--11020429	28	2.4	29	80	11	88	83	0	14	1	0.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11020756--11020967	108	2.0	106	84	5	277	25	16	8	49	1.74
11020869--11021058	97	2.0	97	85	4	258	26	17	8	47	1.76
11021949--11022811	46	19.2	46	85	5	1138	28	15	25	30	1.96
11022336--11022408	36	2.0	36	91	0	119	32	12	28	26	1.92
11022465--11022786	174	1.9	174	88	3	497	27	14	25	31	1.95
11023085--11023423	44	7.9	43	72	9	239	32	21	19	26	1.97
11023084--11023414	85	3.9	85	76	5	278	31	20	20	26	1.98
11023169--11023420	128	2.0	129	92	2	418	32	22	19	25	1.97
11025356--11025552	98	2.0	98	94	0	349	37	24	9	28	1.87
11027797--11028814	218	4.7	218	93	0	1687	26	23	21	29	1.99
11039796--11040020	40	5.7	40	86	5	278	26	27	21	24	1.99
11039796--11040020	119	1.9	120	83	6	296	26	27	21	24	1.99
11047844--11048068	40	5.7	40	85	5	269	26	27	21	24	2.00
11047844--11048068	119	1.9	120	83	6	296	26	27	21	24	2.00
11049525--11049588	34	1.9	34	96	3	121	42	23	1	32	1.64
11051479--11051675	98	2.0	98	96	0	367	37	24	10	27	1.88
11051952--11051976	9	2.8	9	100	0	50	68	8	0	24	1.16
11066445--11066483	16	2.4	16	95	0	69	46	2	20	30	1.64
11071168--11071199	5	6.2	5	92	7	55	0	21	0	78	0.76
11071169--11071203	16	2.2	16	100	0	70	0	22	0	77	0.78
11072399--11072471	31	2.3	31	81	6	76	30	1	10	57	1.41
11084044--11084104	30	2.0	30	100	0	122	24	29	13	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11084575--11084623	17	2.9	17	81	3	55	65	2	2	30	1.15
11096969--11096999	12	2.7	11	95	5	53	29	0	9	61	1.28
11098360--11098401	20	2.1	20	100	0	84	35	14	9	40	1.78
11101340--11101377	19	2.0	19	90	10	60	15	15	0	68	1.22
11105140--11105180	20	2.0	21	85	9	57	29	2	21	46	1.64
11105229--11105275	21	2.2	21	82	10	60	53	6	10	29	1.60
11107036--11107085	16	3.0	16	79	5	55	52	4	2	42	1.31
11107594--11107625	9	3.4	9	95	4	55	21	0	3	75	0.95
11108439--11108491	12	4.4	12	80	0	61	30	26	3	39	1.74
11108439--11108491	18	2.9	18	82	0	70	30	26	3	39	1.74
11110284--11110310	6	4.5	6	100	0	54	14	14	33	37	1.88
11116630--11116671	19	2.1	21	91	8	70	73	2	7	16	1.15
11124137--11124226	35	2.6	35	83	0	117	24	13	18	43	1.86
11128214--11128295	39	2.1	39	97	0	155	19	25	30	24	1.98
11133069--11133120	22	2.4	22	86	0	77	42	13	21	23	1.88
11142508--11142550	13	3.3	13	83	9	61	39	0	0	60	0.97
11143219--11143252	17	1.9	18	88	5	52	41	0	23	35	1.55
11150085--11150126	13	3.2	13	82	3	57	40	0	2	57	1.12
11156475--11156541	23	3.0	23	75	16	70	47	0	1	50	1.10
11162587--11162639	18	2.9	18	80	2	61	41	45	1	11	1.51
11162743--11162800	9	6.4	9	84	7	82	27	10	20	41	1.85
11164115--11164175	31	2.0	29	84	6	77	36	9	8	45	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11165414--11165461	19	2.5	20	82	3	62	60	6	8	25	1.49
11166760--11166851	45	2.1	44	81	6	105	21	14	10	53	1.71
11172919--11172968	20	2.5	19	87	6	64	56	4	10	30	1.51
11176100--11176229	53	2.4	52	80	12	138	35	3	0	61	1.12
11176143--11176260	51	2.3	54	82	11	140	30	1	0	67	1.00
11176187--11176249	20	3.3	18	74	22	58	30	0	0	69	0.88
11176201--11176251	21	2.4	21	80	6	59	31	0	0	68	0.90
11176263--11176373	51	2.2	51	82	6	127	36	3	15	44	1.64
11184088--11184138	16	3.4	16	73	15	63	33	1	0	64	1.05
11184088--11184144	29	2.0	28	93	6	98	36	1	0	61	1.07
11184096--11184206	39	2.9	39	93	4	181	35	2	0	62	1.10
11184136--11184189	28	1.9	28	81	7	65	35	3	0	61	1.14
11190539--11190574	18	2.1	18	94	5	65	16	33	38	11	1.84
11191450--11191484	18	1.9	18	88	11	54	45	2	17	34	1.63
11192534--11193528	507	2.0	507	91	1	1600	28	17	25	28	1.97
11194977--11195022	19	2.3	20	96	3	85	47	17	10	23	1.79
11198863--11198965	47	2.2	48	89	1	154	31	18	14	35	1.91
11204605--11204656	26	2.0	26	100	0	104	38	0	38	23	1.55
11206038--11206449	54	7.8	54	75	7	278	28	17	15	39	1.90
11206679--11206722	23	1.9	23	90	0	70	20	20	18	40	1.91
11211769--11211823	27	2.0	27	100	0	110	45	10	3	40	1.57
11212529--11212585	21	2.7	20	78	10	69	75	10	8	5	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11212529--11212588	20	3.0	20	82	4	75	75	11	8	5	1.19
11221832--11222184	47	7.6	47	90	1	550	38	13	18	28	1.90
11221855--11222184	93	3.5	93	96	0	606	38	13	19	28	1.90
11223029--11223156	42	3.0	43	81	13	165	30	28	17	22	1.97
11223029--11223156	43	3.0	42	80	15	163	30	28	17	22	1.97
11229468--11229528	28	2.2	28	96	0	113	27	6	24	40	1.80
11235489--11235543	9	6.2	9	91	4	76	21	10	27	40	1.87
11235489--11235543	18	3.1	18	86	5	85	21	10	27	40	1.87
11235606--11235684	29	2.7	29	96	0	149	34	6	15	44	1.71
11237682--11237738	20	3.0	18	82	10	69	45	0	29	24	1.53
11237695--11237749	27	2.0	27	86	6	76	45	0	27	27	1.54
11237686--11237748	19	3.3	20	79	14	71	44	0	28	26	1.55
11251173--11251210	17	2.2	18	85	4	51	63	2	23	10	1.39
11251192--11251246	12	4.6	12	73	15	51	63	0	23	12	1.29
11256211--11256267	24	2.4	24	87	0	87	42	31	17	8	1.80
11256312--11256395	24	3.5	24	77	6	89	34	35	22	7	1.82
11256279--11256341	33	1.9	33	86	0	90	36	36	19	7	1.81
11256361--11256408	9	5.3	9	79	0	60	43	33	20	2	1.64
11262083--11262136	21	2.5	22	79	8	67	27	7	35	29	1.84
11262250--11262296	19	2.6	18	82	3	58	59	4	2	34	1.29
11262305--11262361	30	1.9	30	92	0	96	31	14	10	43	1.79
11265366--11265391	6	4.3	6	100	0	52	38	0	61	0	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11266711--11266762	21	2.5	21	77	0	68	51	21	5	21	1.68
11267296--11267341	16	2.8	16	93	3	74	15	21	26	36	1.93
11277197--11277242	18	2.6	18	92	0	74	34	26	10	28	1.90
11278293--11278363	25	2.9	24	85	10	83	42	2	0	54	1.14
11278293--11278363	24	3.0	23	84	14	83	42	2	0	54	1.14
11278732--11279079	42	8.3	42	81	8	340	30	30	16	22	1.96
11278732--11278926	43	4.8	38	85	5	160	31	31	15	21	1.94
11278732--11279051	85	3.9	81	82	7	326	30	29	17	22	1.97
11281089--11281146	30	1.9	30	89	0	89	41	3	24	31	1.71
11281358--11281389	13	2.5	13	94	0	55	31	0	12	56	1.37

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204