genome.fa.s26.2.7.7.80.10.50.1000.109.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Length:  60343961

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  109  of  204  ( 24404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33881180--33881752	150	3.8	149	80	3	555	25	20	14	40	1.90
33881513--33881720	36	5.6	36	73	8	166	25	19	13	41	1.88
33881182--33881752	224	2.5	224	80	3	549	25	20	14	40	1.90
33881816--33881899	23	3.6	23	71	10	71	29	19	14	36	1.91
33882399--33882443	15	3.0	15	80	0	54	48	8	2	40	1.47
33882399--33882462	30	2.1	31	82	8	78	48	6	3	42	1.44
33884879--33884939	18	3.4	18	76	0	68	13	40	3	42	1.60
33888080--33888147	35	1.9	35	88	5	102	45	11	8	33	1.72
33888542--33888605	31	2.1	31	81	0	74	37	17	21	23	1.94
33890158--33890209	19	2.7	20	79	11	63	65	3	0	30	1.10
33890830--33890895	32	2.1	32	94	2	116	33	0	0	66	0.92
33890988--33891018	15	2.0	16	93	6	55	25	0	6	67	1.14
33891976--33892000	7	3.6	7	100	0	50	28	0	12	60	1.32
33894131--33894477	125	2.8	126	88	2	529	34	21	14	29	1.93
33896676--33896987	156	2.0	155	96	1	572	28	15	17	38	1.90
33897636--33897765	69	1.9	69	83	0	170	34	16	22	26	1.95
33900154--33900388	43	5.5	43	77	2	186	39	19	15	25	1.91
33900224--33900394	86	2.0	86	84	0	225	39	18	15	27	1.90
33902429--33902490	25	2.5	25	94	0	106	51	25	22	0	1.48
33917421--33917474	24	2.2	25	77	9	58	29	12	12	44	1.80
33921158--33921251	30	3.1	30	95	1	161	26	25	6	41	1.79
33921168--33921245	15	5.2	15	70	11	70	26	23	7	42	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33925788--33925882	31	3.1	31	92	1	147	26	23	6	44	1.77
33925798--33925876	15	5.2	15	69	14	63	26	20	7	45	1.77
33927824--33927855	7	4.6	7	100	0	64	62	12	0	25	1.30
33928764--33928798	18	1.9	18	94	0	61	14	40	2	42	1.60
33928765--33928807	9	4.9	9	82	2	52	18	34	2	44	1.63
33932110--33932139	12	2.5	12	100	0	60	16	26	6	50	1.70
33933752--33933978	51	4.5	50	82	3	226	28	14	28	28	1.96
33933752--33933978	102	2.2	101	82	5	262	28	14	28	28	1.96
33934185--33934244	12	4.9	12	72	9	50	41	3	21	33	1.70
33938777--33938854	27	3.0	25	74	9	75	38	12	16	32	1.87
33940943--33941105	42	3.9	42	81	1	184	33	23	15	27	1.95
33956892--33956940	11	4.3	12	73	21	52	30	26	2	40	1.67
33956902--33956999	51	1.9	51	87	4	144	27	23	3	45	1.67
33959029--33959077	21	2.3	21	79	6	55	40	34	20	4	1.71
33959287--33959318	9	3.7	9	95	4	57	34	0	9	56	1.32
33962454--33962870	125	3.3	124	83	5	545	31	22	17	28	1.96
33967677--33967723	14	3.5	14	75	18	55	6	4	17	72	1.22
33971609--33971674	29	2.2	30	81	2	71	43	7	19	28	1.78
33974366--33974395	9	3.3	9	90	0	51	13	0	26	60	1.34
33975610--33975645	18	2.1	16	90	10	54	33	0	2	63	1.08
33976739--33977111	127	3.0	127	91	1	581	31	17	23	27	1.97
33977123--33977665	21	25.2	21	80	9	564	24	0	30	44	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33977123--33977665	43	12.6	43	79	9	585	24	0	30	44	1.56
33977605--33977664	27	2.2	28	91	5	97	23	0	36	40	1.55
33979059--33979096	20	1.9	20	84	10	51	55	7	2	34	1.43
33980042--33980097	11	5.2	11	85	6	62	50	1	26	21	1.59
33980045--33980097	22	2.4	21	84	9	70	50	1	28	18	1.57
33988262--33988438	46	3.8	46	87	0	264	36	8	24	29	1.85
33990967--33990998	17	1.9	16	93	6	55	34	18	0	46	1.49
33998422--33998483	28	2.5	23	77	22	79	22	0	33	43	1.54
33997828--33998573	29	25.6	29	89	3	1032	23	0	30	45	1.55
33998581--33998664	43	2.0	43	88	6	127	47	11	0	40	1.40
33999034--33999074	18	2.3	18	86	0	64	41	4	31	21	1.74
33999728--33999753	7	3.7	7	100	0	52	57	15	0	26	1.38
34000928--34001051	22	5.3	22	75	12	122	42	0	29	28	1.56
34000892--34001056	73	2.3	73	96	0	303	44	0	27	26	1.59
34011928--34011967	20	2.0	20	90	0	62	37	32	15	15	1.88
34017119--34017153	13	2.7	13	95	0	61	20	25	31	22	1.98
34017354--34017386	10	3.3	10	95	0	57	54	21	6	18	1.64
34023819--34023858	2	20.0	2	94	0	71	50	2	47	0	1.14
34025236--34025265	6	5.0	6	91	0	51	20	16	33	30	1.94
34041549--34041586	3	12.7	3	100	0	76	68	31	0	0	0.90
34043197--34043509	44	7.0	44	75	8	272	27	21	19	31	1.97
34043282--34043654	94	4.0	94	78	10	417	27	20	19	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34043197--34043605	182	2.2	182	84	3	536	26	20	20	32	1.97
34055865--34055900	7	5.1	7	100	0	72	86	0	0	13	0.58
34056262--34056376	61	1.9	61	87	3	169	47	15	20	16	1.82
34057534--34057579	14	3.3	14	79	8	58	8	0	13	78	0.97
34057619--34057739	41	3.0	41	92	2	192	41	14	21	22	1.90
34063589--34063835	94	2.6	95	83	2	320	31	17	11	38	1.86
34076158--34076205	25	2.0	23	92	8	78	45	0	18	35	1.50
34077430--34077456	6	4.5	6	100	0	54	33	33	0	33	1.58
34079146--34079194	20	2.7	18	77	22	57	51	4	2	42	1.32
34081658--34081728	23	3.1	24	80	15	87	22	19	22	35	1.96
34082874--34082988	49	2.4	47	80	9	119	31	13	24	30	1.94
34084019--34084084	23	2.9	23	84	2	71	40	21	18	19	1.91
34088299--34088326	14	2.0	14	100	0	56	28	7	35	28	1.84
34093211--34093273	25	2.6	23	76	18	56	12	9	11	66	1.44
34093221--34093273	25	2.1	25	82	6	63	11	9	11	67	1.41
34098937--34099102	90	1.9	88	85	2	233	39	19	9	31	1.83
34099176--34099219	19	2.4	19	85	11	56	65	4	6	22	1.35
34099425--34099547	39	3.2	37	73	16	88	33	2	3	60	1.25
34099990--34100050	31	2.0	31	96	0	113	44	4	14	36	1.67
34104070--34104116	15	3.0	15	81	6	58	80	2	4	12	0.94
34104066--34104116	25	2.0	25	85	7	68	80	1	3	13	0.94
34104469--34104554	30	2.9	30	94	3	147	17	34	33	13	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34104649--34104693	10	4.4	10	86	10	56	13	0	4	82	0.82
34104669--34104719	12	4.3	12	90	5	61	3	3	11	80	0.98
34104648--34104752	11	9.9	11	75	12	78	10	1	7	80	0.99
34104716--34104753	20	2.0	20	94	5	69	15	0	5	78	0.91
34105772--34105812	7	5.7	7	97	2	73	87	0	12	0	0.53
34105763--34105812	7	6.6	8	93	4	70	88	0	10	2	0.61
34121769--34121813	17	2.7	17	96	3	83	40	0	13	46	1.43
34121783--34121821	17	2.3	17	86	0	51	38	0	17	43	1.50
34122590--34122669	42	1.9	42	84	0	106	26	21	28	23	1.99
34132131--34132187	17	3.5	17	70	18	57	31	47	1	19	1.60
34132130--34132199	32	2.2	32	94	0	122	34	45	2	17	1.63
34135001--34135025	13	1.9	13	100	0	50	28	16	0	56	1.41
34138319--34138363	20	2.2	20	84	0	54	33	17	37	11	1.85
34149254--34149526	126	2.2	126	86	1	377	32	17	21	28	1.96
34152278--34152333	26	2.2	26	90	0	85	35	12	17	33	1.88
34152289--34152347	26	2.3	26	78	0	64	42	13	15	28	1.85
34153948--34153981	17	2.0	17	88	0	50	32	35	11	20	1.89
34160026--34160078	22	2.4	22	80	0	61	54	15	13	16	1.71
34160428--34160640	110	1.9	112	84	5	290	29	11	21	37	1.89
34160519--34160832	138	2.3	137	82	7	393	29	10	22	37	1.87
34162540--34162564	12	2.1	12	100	0	50	48	0	24	28	1.52
34177938--34178058	59	2.1	59	95	3	217	30	28	13	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34179556--34179601	23	2.0	23	91	0	74	63	15	4	17	1.47
34179626--34179687	12	5.3	12	76	5	56	67	27	1	3	1.15
34184192--34184243	22	2.4	21	79	17	54	38	0	5	55	1.24
34184094--34184317	121	1.9	120	96	0	412	43	0	4	50	1.29
34184532--34184568	16	2.3	16	95	0	65	21	29	5	43	1.75
34186293--34186317	10	2.5	10	100	0	50	16	0	8	76	1.02
34189606--34189758	74	2.1	75	81	3	175	32	7	18	41	1.78
34190063--34190223	41	3.9	41	87	0	241	26	19	22	31	1.98
34198081--34198222	41	3.5	41	90	0	221	26	20	21	30	1.98
34198219--34198255	19	1.9	19	100	0	74	32	5	10	51	1.60

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204