genome.fa.s26.2.7.7.80.10.50.1000.122.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Length:  60343961

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  122  of  204  ( 24404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37999313--37999340	14	2.0	14	100	0	56	21	7	14	57	1.61
38006481--38006562	6	13.7	6	94	0	146	67	14	1	17	1.31
38006535--38006628	45	2.1	46	84	9	122	71	6	11	10	1.31
38007537--38007578	7	6.1	7	88	8	52	64	0	19	16	1.30
38007543--38007578	13	2.8	13	84	16	56	63	0	19	16	1.30
38008787--38009091	86	3.5	87	88	1	436	29	23	23	23	1.99
38008859--38008997	44	3.2	43	65	15	106	29	23	23	24	1.99
38008928--38009062	43	3.1	41	66	23	98	25	23	24	25	2.00
38009188--38009344	44	3.6	44	75	5	129	29	18	25	26	1.98
38009271--38009393	44	2.8	44	82	3	140	28	16	23	31	1.96
38015636--38015687	11	4.8	11	78	4	61	61	0	0	38	0.96
38015642--38015681	21	1.9	21	89	0	62	57	0	0	42	0.98
38018719--38018806	46	1.9	46	90	0	140	21	6	12	59	1.57
38019997--38020039	21	2.0	21	86	8	61	34	6	18	39	1.78
38020685--38020728	20	2.3	20	84	7	56	45	6	22	25	1.77
38027210--38027317	30	3.6	30	76	5	112	39	1	8	50	1.43
38034617--38034647	5	6.2	5	100	0	62	41	19	19	19	1.90
38035391--38035450	30	2.0	31	86	3	86	40	0	40	20	1.52
38035664--38035700	9	4.1	9	92	0	65	29	10	13	45	1.77
38036823--38036880	29	1.9	31	89	6	93	46	6	13	32	1.70
38036823--38036887	29	2.2	31	86	5	89	50	6	12	30	1.64
38036830--38036894	29	2.2	29	81	5	78	50	6	12	30	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38037351--38037387	9	4.1	9	92	0	65	45	13	10	29	1.77
38041691--38041730	3	13.3	3	100	0	80	67	0	0	32	0.91
38052360--38052402	19	2.3	19	83	0	50	46	2	9	41	1.48
38064289--38064557	26	10.2	26	77	9	251	42	20	20	17	1.89
38064289--38064557	53	5.1	52	81	9	280	42	20	20	17	1.89
38066629--38066726	47	2.0	48	81	14	114	36	7	4	52	1.48
38071304--38071349	22	2.1	22	92	8	76	69	0	17	13	1.19
38072540--38073482	88	10.8	88	88	0	1361	27	23	24	23	2.00
38074919--38074943	5	5.0	5	100	0	50	20	0	0	80	0.72
38075071--38075168	47	2.0	48	81	14	114	36	7	4	52	1.48
38086978--38087173	90	2.2	89	82	6	243	28	21	15	34	1.94
38096101--38096216	44	2.6	45	87	1	162	34	17	7	40	1.78
38099712--38099751	13	3.0	14	82	10	57	22	12	15	50	1.77
38099712--38099762	13	3.8	13	82	12	52	25	11	13	49	1.76
38101348--38101457	31	3.5	31	76	14	100	30	28	3	38	1.74
38101453--38101514	32	1.9	33	83	3	81	41	30	0	27	1.56
38101646--38101679	10	3.1	11	91	8	52	0	44	0	55	0.99
38101899--38101932	11	3.0	11	91	4	50	11	0	14	73	1.10
38103678--38103727	16	3.0	16	78	18	57	66	2	2	30	1.14
38103678--38103728	17	3.0	16	76	21	50	66	1	1	29	1.13
38104178--38104220	21	2.0	22	82	13	54	41	2	2	53	1.26
38105454--38105484	3	10.3	3	100	0	62	32	0	35	32	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38108414--38108480	31	2.2	29	76	10	73	34	11	8	44	1.73
38110617--38110668	13	4.1	13	72	22	56	59	9	11	19	1.59
38111061--38111105	18	2.5	18	82	7	56	40	17	4	37	1.70
38113935--38113978	11	3.8	11	80	11	52	31	0	4	63	1.14
38115787--38115815	2	14.5	2	100	0	58	0	0	48	51	1.00
38115994--38116119	33	3.8	32	74	12	112	30	16	26	25	1.97
38117256--38117311	25	2.2	25	78	6	60	60	7	8	23	1.51
38117111--38117674	206	2.8	206	91	3	903	40	10	14	34	1.80
38117620--38117780	85	1.9	85	82	6	200	35	15	13	36	1.86
38130376--38130432	27	2.1	27	83	3	71	29	3	3	63	1.28
38133000--38133140	40	3.5	40	89	1	212	31	21	21	26	1.98
38134529--38134559	12	2.6	12	89	0	53	41	6	0	51	1.27
38135759--38135823	32	2.1	32	91	5	107	50	3	24	21	1.63
38135785--38135910	57	2.2	57	90	5	193	50	6	15	27	1.69
38138555--38138604	5	11.2	5	76	23	58	32	0	0	68	0.90
38138563--38138605	8	5.1	8	94	5	68	27	0	0	72	0.85
38140916--38140945	11	2.7	11	89	0	51	50	0	0	50	1.00
38143321--38143366	18	2.6	18	89	0	74	34	10	15	39	1.82
38143451--38143582	70	1.9	66	87	6	192	45	13	10	30	1.77
38148972--38149135	62	2.6	62	85	7	217	21	27	26	24	1.99
38155946--38156088	62	2.3	62	81	2	171	22	27	24	25	2.00
38159174--38159219	18	2.5	20	83	16	64	32	4	23	39	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38160734--38160850	54	2.2	54	82	3	137	28	23	25	22	1.99
38161923--38161981	2	29.5	2	100	0	118	49	0	50	0	1.00
38162611--38162642	9	3.4	9	91	8	55	65	0	34	0	0.93
38162614--38162642	5	6.0	5	92	8	51	62	0	37	0	0.96
38162610--38162657	19	2.6	18	80	12	53	66	0	31	2	1.03
38162965--38162993	3	9.7	3	100	0	58	68	0	0	31	0.89
38167306--38167355	21	2.4	22	71	21	52	44	2	4	50	1.32
38168617--38168777	33	4.8	32	71	8	124	28	26	16	28	1.97
38171514--38171556	8	5.2	8	78	15	52	72	2	2	23	1.08
38171514--38171560	17	2.8	18	78	12	55	70	2	2	25	1.10
38171505--38171575	15	4.5	15	75	14	54	66	5	1	26	1.22
38171568--38171632	21	3.1	20	78	10	67	61	6	3	29	1.35
38171700--38171744	3	15.0	3	100	0	90	66	0	0	33	0.92
38173340--38173423	26	3.1	26	84	6	105	53	13	10	22	1.70
38179564--38179859	111	2.7	111	88	2	420	34	17	15	33	1.91
38179881--38179918	20	1.9	20	84	10	51	57	2	13	26	1.49
38180179--38180212	18	1.9	18	88	5	52	52	0	14	32	1.42
38180132--38180301	90	2.0	88	85	9	233	50	1	9	39	1.43
38181363--38181403	12	3.4	12	89	0	64	12	7	51	29	1.66
38181945--38182242	98	3.0	97	92	3	465	30	19	15	34	1.93
38182164--38182703	44	12.4	44	71	12	254	28	22	18	30	1.97
38182240--38182403	87	1.9	90	82	6	210	28	23	18	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38182323--38182717	130	3.0	128	76	11	385	26	23	19	31	1.98
38184370--38184408	20	2.0	20	85	10	53	12	7	0	79	0.93
38188647--38188940	112	2.7	109	88	5	409	36	17	16	29	1.92
38188993--38189030	20	1.9	20	84	10	51	57	2	13	26	1.49
38189279--38189312	18	1.9	18	88	5	52	52	0	14	32	1.42
38189412--38189500	29	3.0	29	74	9	81	58	1	5	34	1.29
38190032--38190090	30	2.0	30	90	6	93	59	0	1	38	1.08
38190032--38190083	10	5.1	10	75	13	52	55	0	1	42	1.10
38190032--38190135	39	2.6	39	90	3	154	62	0	2	34	1.10
38190934--38190974	12	3.4	12	86	0	55	12	7	48	31	1.68
38196402--38196460	29	2.0	29	100	0	118	38	20	13	27	1.90
38196456--38196513	29	2.0	29	100	0	116	34	13	24	27	1.93
38198616--38198814	98	2.0	98	96	3	366	46	20	13	20	1.83
38208881--38208926	23	2.0	24	91	4	76	26	23	4	45	1.71
38209336--38209449	21	5.6	21	73	12	76	14	14	38	33	1.85
38210098--38210131	2	17.0	2	100	0	68	50	50	0	0	1.00
38210158--38210206	25	1.9	25	83	4	62	46	10	10	32	1.71
38210116--38210431	136	2.3	136	88	3	485	45	25	6	22	1.76
38212320--38212457	62	2.2	62	88	0	204	48	21	7	22	1.75
38212752--38212787	16	2.2	17	95	5	65	58	25	0	16	1.38
38212705--38212781	40	2.0	39	87	5	111	58	16	3	20	1.54
38213052--38213083	17	1.9	17	93	6	57	28	28	0	43	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38213197--38213237	21	2.0	21	90	0	64	29	26	12	31	1.92
38213274--38213339	30	2.2	30	84	10	82	22	12	18	46	1.81
38213983--38214046	29	2.2	31	75	16	73	45	1	6	46	1.37
38216899--38216940	22	1.9	22	85	9	59	52	16	0	30	1.44
38230107--38230224	42	2.8	42	76	2	121	20	21	16	42	1.89
38230199--38230302	42	2.5	42	79	3	95	14	26	21	37	1.92
38241129--38241164	18	1.9	18	88	5	54	16	25	0	58	1.38
38241128--38241165	13	3.1	12	85	14	51	15	23	0	60	1.35
38250674--38250728	21	2.5	22	78	18	62	36	3	7	52	1.47
38251263--38251301	20	2.0	20	89	0	60	30	2	0	66	1.05

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204