genome.fa.s26.2.7.7.80.10.50.1000.99.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Length:  60343961

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  99  of  204  ( 24404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30792666--30792810	77	1.9	77	97	0	272	40	6	16	35	1.75
30803781--30803843	31	2.0	31	100	0	126	42	12	22	22	1.87
30806679--30806723	23	2.0	23	91	4	74	46	17	4	31	1.68
30807900--30807936	9	4.1	9	92	0	65	29	10	13	45	1.77
30810210--30810234	6	4.2	6	100	0	50	20	16	32	32	1.94
30817518--30817646	36	3.6	35	89	4	168	42	31	11	14	1.82
30821146--30821226	37	2.2	38	81	2	101	33	18	11	37	1.86
30822076--30822130	22	2.5	22	82	14	60	47	10	5	36	1.62
30823515--30823543	9	3.2	9	100	0	58	20	10	37	31	1.86
30824567--30824766	41	4.9	41	88	1	285	20	19	31	29	1.97
30825107--30825155	14	3.4	14	88	2	71	24	0	36	38	1.56
30825152--30825543	201	2.0	201	87	6	580	29	2	26	41	1.68
30825659--30825699	14	2.9	14	82	13	57	24	2	43	29	1.67
30826085--30826237	73	2.1	73	93	2	263	49	8	8	33	1.63
30830300--30830334	9	4.0	9	96	3	63	34	0	0	65	0.93
30831205--30831291	28	3.1	28	73	17	83	44	1	1	52	1.15
30831213--30831297	26	3.2	26	74	12	91	47	2	0	50	1.14
30831486--30831528	18	2.4	19	80	11	54	51	0	0	48	1.00
30831348--30831768	136	2.9	138	82	9	427	47	4	3	44	1.41
30831392--30831599	69	3.1	65	64	20	156	46	3	3	46	1.36
30831472--30831798	156	2.1	155	97	0	609	47	6	3	43	1.45
30831651--30831699	15	2.9	18	80	20	61	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30831651--30831705	15	3.4	16	80	16	53	43	0	1	54	1.10
30831921--30831963	16	2.6	17	92	3	70	34	34	0	30	1.58
30834471--30834638	86	2.0	86	84	0	219	32	10	16	41	1.82
30834040--30834772	348	2.1	338	79	6	749	30	11	15	42	1.81
30834842--30835116	86	3.2	85	87	2	361	31	8	18	42	1.79
30834842--30835194	86	4.1	85	84	4	350	31	9	17	42	1.80
30835154--30835246	40	2.3	40	81	3	98	29	6	12	51	1.65
30835191--30835275	40	2.1	40	84	4	109	30	7	12	49	1.68
30835584--30835614	14	2.1	15	94	5	55	22	3	6	67	1.28
30837261--30837526	43	6.2	42	85	3	307	21	16	28	33	1.95
30837261--30837526	129	2.1	129	84	2	347	21	16	28	33	1.95
30838449--30838488	21	2.0	20	85	5	53	30	2	12	55	1.50
30840642--30840689	17	2.9	17	82	11	55	16	4	2	77	1.03
30840662--30840753	37	2.5	37	77	18	102	21	9	1	67	1.26
30845996--30846051	21	2.8	20	83	5	60	39	8	12	39	1.75
30846030--30846074	23	2.0	23	86	4	65	37	6	17	37	1.76
30846016--30846077	19	3.0	21	79	11	65	37	6	16	40	1.74
30846185--30846215	16	1.9	16	93	0	53	74	0	22	3	0.96
30848933--30848978	24	1.9	24	86	0	65	45	15	26	13	1.82
30852902--30853795	132	6.8	132	93	0	1497	28	18	24	29	1.98
30854120--30854230	19	5.8	19	89	0	177	39	9	13	37	1.76
30854127--30854230	38	2.7	38	98	0	199	40	8	12	38	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30854372--30854402	16	1.9	16	93	0	53	67	0	29	3	1.06
30857207--30857261	26	2.1	26	93	0	92	30	5	5	58	1.44
30858906--30858941	15	2.3	16	90	4	56	66	11	0	22	1.22
30859298--30859372	29	2.6	29	85	8	91	62	5	2	29	1.31
30859342--30859387	20	2.2	21	92	3	76	58	6	2	32	1.36
30861053--30861338	84	3.3	84	74	10	299	28	24	19	27	1.99
30861137--30861253	45	2.6	45	83	5	139	25	26	20	27	1.99
30861270--30861381	44	2.5	42	81	5	107	33	19	18	28	1.96
30861096--30861556	218	2.1	218	87	1	647	27	23	20	28	1.99
30873507--30873542	15	2.3	16	90	4	56	66	11	0	22	1.22
30873643--30873695	24	2.2	24	83	12	65	69	5	5	18	1.28
30873896--30873939	23	1.9	23	85	0	61	61	2	2	34	1.21
30873888--30873962	29	2.6	30	83	8	84	62	4	2	30	1.27
30877494--30877520	14	1.9	14	100	0	54	40	29	7	22	1.81
30880314--30880422	42	2.6	42	95	0	191	19	30	25	24	1.98
30897633--30897867	117	2.0	118	87	2	339	43	16	13	25	1.85
30897921--30897974	27	2.0	27	92	0	90	37	3	12	46	1.60
30899587--30899687	50	2.0	50	100	0	202	29	19	11	38	1.88
30904056--30904160	53	2.0	53	92	0	174	38	11	15	35	1.83
30918594--30918661	19	3.5	19	70	18	68	33	2	0	63	1.10
30918598--30918672	39	1.9	39	94	0	132	33	4	0	62	1.14
30918647--30918708	11	5.9	11	83	12	78	46	3	0	50	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30918608--30918708	50	2.0	52	84	3	134	40	3	0	55	1.18
30919394--30919431	11	3.4	11	85	7	58	23	10	7	57	1.58
30919396--30919428	12	2.8	12	90	4	50	27	12	3	57	1.49
30919431--30919458	14	2.0	14	100	0	56	14	21	21	42	1.88
30919419--30919530	58	1.9	59	87	5	165	15	17	16	50	1.79
30920028--30920070	12	3.6	12	90	0	68	20	11	13	53	1.71
30920099--30920128	12	2.5	12	94	0	51	23	6	13	56	1.60
30920159--30920188	12	2.5	12	94	0	51	23	6	13	56	1.60
30920040--30920270	60	3.9	59	97	1	426	20	10	11	56	1.64
30920219--30920248	12	2.5	12	94	0	51	23	6	13	56	1.60
30925185--30925213	3	9.7	3	100	0	58	31	0	0	68	0.89
30925779--30925811	17	1.9	17	88	11	50	27	3	6	63	1.32
30926245--30926327	7	11.9	7	78	5	78	28	21	0	49	1.50
30926244--30926330	28	3.1	28	77	6	95	27	24	0	48	1.51
30926282--30926357	28	2.7	28	76	11	75	27	28	2	40	1.70
30926352--30926376	7	3.6	7	100	0	50	44	12	0	44	1.41
30928643--30928705	25	2.6	25	82	7	76	25	17	6	50	1.69
30938350--30938409	29	2.1	29	100	0	120	40	6	20	33	1.78
30941181--30941236	24	2.3	24	82	14	62	30	3	16	50	1.62
30941235--30941323	27	3.3	27	98	0	169	29	12	17	40	1.86
30942729--30942791	28	2.2	28	82	0	81	34	20	12	31	1.90
30944360--30944390	16	1.9	16	93	0	53	58	0	16	25	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30960080--30960131	18	2.9	18	77	8	52	71	5	1	21	1.17
30961409--30961446	19	2.1	19	85	5	51	60	5	7	26	1.46
30963275--30963331	30	1.9	30	82	7	71	45	3	0	50	1.18
30967635--30967664	6	5.0	6	100	0	60	33	0	16	50	1.46
30970004--30970207	83	2.5	82	91	3	320	51	15	6	25	1.68
30970284--30970740	159	2.9	154	81	6	508	33	14	17	35	1.89
30975754--30976068	41	7.7	41	91	0	477	23	27	20	28	1.99
30983611--30983649	19	2.0	21	90	10	64	38	20	28	12	1.89
30984153--30984196	15	2.8	16	82	10	54	50	11	0	38	1.39
30986438--30986463	12	2.2	12	100	0	52	57	0	0	42	0.98
30990532--30990599	34	2.0	34	91	0	109	30	7	17	44	1.76
30990805--30991057	127	2.0	126	98	0	488	33	13	13	39	1.84
30996313--30996374	29	2.1	29	90	0	97	19	25	17	37	1.94
30997614--30997664	17	3.0	17	100	0	102	35	5	0	58	1.22
31000646--31000794	78	2.0	77	84	8	202	49	9	13	27	1.72
31007663--31007819	48	3.3	48	91	1	235	32	10	11	45	1.74
31008226--31008266	6	6.8	6	82	0	55	2	31	34	31	1.71
31008221--31008266	18	2.6	18	85	0	56	4	30	32	32	1.77
31010868--31010924	30	1.9	30	89	7	89	36	31	0	31	1.58
31021546--31021730	46	4.0	46	97	0	343	28	27	9	34	1.88
31022482--31022523	17	2.6	16	85	7	57	52	19	0	28	1.46
31030202--31030255	24	2.2	24	78	18	58	40	0	20	38	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31030989--31031103	41	2.8	41	86	0	149	31	18	21	28	1.97
31037913--31037989	37	2.1	37	97	0	145	45	12	11	29	1.78
31043225--31043249	7	3.6	7	100	0	50	60	0	0	40	0.97
31054954--31054992	18	2.2	18	85	0	51	61	2	23	12	1.43
31056391--31056421	4	7.8	4	92	0	53	22	3	0	74	0.96
31058551--31058617	33	2.0	33	91	5	109	43	23	13	19	1.86
31080516--31080596	29	2.8	28	81	5	81	34	16	11	38	1.84
31084060--31084184	56	2.2	56	90	2	189	43	7	12	36	1.71
31084178--31084240	23	2.7	23	87	4	92	31	1	20	46	1.61
31084207--31084805	29	20.1	29	83	9	685	31	0	24	43	1.60

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204