genome.fa.s26.2.7.7.80.10.50.1000.140.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Length:  60343961

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  140  of  204  ( 24404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42822471--42822539	36	1.9	35	82	8	86	27	13	26	33	1.93
42823762--42823882	62	2.0	59	80	7	136	41	2	6	49	1.42
42826865--42827100	123	1.9	123	86	3	332	28	15	17	38	1.91
42827218--42827345	33	3.8	33	77	7	141	43	13	0	42	1.49
42827220--42827352	67	2.0	65	84	7	169	42	12	0	43	1.48
42838760--42838808	16	3.1	16	84	0	71	42	4	32	20	1.71
42842483--42842537	27	2.0	27	100	0	110	32	32	10	23	1.90
42844871--42844896	11	2.4	11	100	0	52	53	0	7	38	1.30
42844869--42844998	39	3.3	40	79	13	160	59	0	3	36	1.16
42844882--42844943	30	2.1	28	82	11	72	61	0	3	35	1.12
42844920--42844952	8	4.0	8	92	7	57	63	0	0	36	0.95
42844923--42844953	9	3.6	9	95	4	55	70	0	0	29	0.87
42844951--42844976	11	2.4	11	100	0	52	53	0	7	38	1.30
42846236--42846275	21	1.9	21	94	0	71	32	0	12	55	1.38
42858650--42858687	19	2.1	19	85	9	53	34	0	7	57	1.28
42861279--42861339	27	2.3	27	82	0	68	22	26	16	34	1.95
42861423--42861521	44	2.2	45	83	5	130	23	22	15	39	1.91
42861496--42861599	45	2.3	45	86	0	145	26	19	8	45	1.79
42868559--42868610	15	3.5	15	76	5	52	38	1	5	53	1.36
42869179--42869249	29	2.5	29	81	2	90	33	8	18	39	1.81
42870398--42870471	36	2.1	36	92	0	121	25	18	24	31	1.98
42871396--42871437	20	2.2	19	83	12	50	64	2	4	28	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42885451--42885475	13	1.9	13	100	0	50	56	0	4	40	1.18
42885501--42885539	20	1.9	21	89	5	62	33	5	2	58	1.33
42892436--42892474	17	2.2	18	86	4	53	38	5	2	53	1.37
42902105--42902194	47	1.9	47	100	0	180	31	20	12	36	1.89
42904260--42904349	42	2.1	42	89	0	144	26	27	24	21	1.99
42906240--42906499	138	1.9	137	84	2	351	35	25	19	20	1.96
42910434--42910477	18	2.6	17	82	10	54	47	11	0	40	1.39
42911252--42911285	17	2.0	17	88	0	50	64	2	11	20	1.39
42911619--42911667	22	2.3	20	75	6	53	61	6	4	28	1.38
42914716--42914767	17	3.2	15	75	19	50	40	0	1	57	1.10
42914711--42914767	15	3.5	15	73	17	51	43	1	1	52	1.21
42917195--42917246	22	2.5	20	79	11	59	26	26	19	26	1.99
42917204--42917246	22	2.0	22	90	0	68	25	25	20	27	1.99
42918817--42918851	6	5.8	6	89	0	52	71	2	11	14	1.25
42919354--42919398	23	2.0	23	86	0	63	60	15	6	17	1.56
42923891--42923920	7	4.3	7	95	0	51	50	0	30	20	1.49
42943238--42943301	17	3.9	17	80	15	64	73	0	3	23	0.97
42949001--42949035	17	2.1	17	100	0	70	20	22	22	34	1.97
42950400--42950442	16	2.5	18	81	11	54	58	11	16	13	1.64
42970001--42970192	50	3.7	51	76	4	163	27	20	28	22	1.99
42970443--42970481	20	2.0	20	90	10	62	56	5	23	15	1.59
42975493--42975531	20	2.0	20	90	10	62	15	23	5	56	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42975740--42975926	49	3.8	50	80	6	202	20	28	21	29	1.98
42977875--42978006	45	3.0	45	88	2	196	33	25	16	24	1.96
42986283--42986341	29	2.0	29	100	0	118	27	18	13	40	1.88
42992381--42992472	45	2.0	45	100	0	184	21	23	11	42	1.86
42993526--42993553	2	14.0	2	100	0	56	0	0	50	50	1.00
42994965--42995053	44	2.0	44	97	0	169	46	11	15	26	1.80
42998416--42998461	23	1.9	23	86	8	65	30	19	0	50	1.48
43006500--43006530	16	1.9	16	93	0	53	32	9	19	38	1.84
43006707--43006745	17	2.3	17	86	8	53	23	2	5	69	1.21
43007636--43007691	28	2.0	28	92	0	94	32	21	14	32	1.93
43008770--43008805	18	2.0	18	94	0	63	50	25	5	19	1.69
43009045--43009070	13	2.0	13	100	0	52	53	7	0	38	1.30
43011264--43011306	21	2.0	21	95	0	77	37	4	25	32	1.77
43015407--43015491	41	2.1	41	93	0	143	40	21	14	24	1.90
43016423--43016459	14	2.6	14	91	0	65	21	18	29	29	1.97
43024221--43024291	21	3.2	21	63	18	54	40	5	11	42	1.64
43024221--43024360	45	3.1	45	96	2	264	41	6	11	40	1.67
43025405--43025443	18	2.1	19	90	4	62	58	0	5	35	1.20
43030889--43030918	3	10.0	3	100	0	60	0	33	0	66	0.92
43046738--43046801	25	2.7	23	78	7	65	20	26	17	35	1.94
43046923--43046982	24	2.4	25	80	2	77	20	28	20	31	1.97
43047004--43047065	25	2.5	25	78	5	63	24	22	17	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43051005--43051194	50	3.7	50	83	4	209	26	21	28	23	1.99
43051008--43051194	100	1.8	104	82	6	247	26	21	29	22	1.99
43051005--43051233	50	4.5	50	80	6	167	27	20	27	23	1.99
43058021--43058231	79	2.7	78	77	8	210	19	31	18	30	1.96
43058016--43058216	39	5.1	39	82	4	224	19	30	17	31	1.96
43058020--43058231	40	5.3	40	81	3	223	19	31	17	31	1.96
43059951--43059989	17	2.3	17	86	8	53	30	5	0	64	1.15
43061126--43061278	81	1.9	82	86	1	218	41	11	7	39	1.70
43061914--43061958	22	2.0	22	82	0	54	31	8	24	35	1.86
43061943--43061996	23	2.3	23	93	0	90	22	1	22	53	1.55
43066062--43066106	22	2.0	22	91	0	72	28	6	28	35	1.83
43066239--43066367	6	21.5	6	98	0	249	49	15	0	34	1.45
43066367--43066429	32	2.0	32	96	0	117	38	9	17	34	1.82
43071016--43071080	32	2.0	32	100	0	130	36	12	18	32	1.88
43074740--43074809	33	2.2	33	97	2	133	34	17	14	34	1.90
43079521--43079555	18	2.0	17	88	5	52	45	0	0	54	0.99
43079509--43079825	157	2.0	157	98	0	607	47	5	3	44	1.41
43079678--43079712	18	2.0	17	88	5	52	45	0	0	54	0.99
43079510--43079748	75	3.1	75	64	18	200	46	3	3	46	1.35
43079860--43079964	44	2.5	40	76	15	113	31	29	4	34	1.78
43079858--43079967	45	2.6	44	81	8	131	31	29	5	33	1.80
43079946--43080015	16	4.4	16	96	0	104	32	35	0	31	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43085946--43086007	31	2.0	30	84	3	79	58	8	6	27	1.52
43087935--43087960	6	4.3	6	100	0	52	15	0	0	84	0.62
43098917--43098943	13	2.1	13	100	0	54	51	7	14	25	1.68
43102178--43102284	43	2.6	41	87	3	151	24	21	24	29	1.99
43111637--43111673	10	3.6	10	96	3	65	32	0	2	64	1.07
43112928--43112965	19	2.0	19	89	0	58	21	0	15	63	1.31
43115159--43116044	443	2.0	443	97	0	1655	26	20	25	26	1.99
43116390--43116576	74	2.6	75	88	5	278	51	13	5	28	1.64
43118838--43119230	104	3.9	101	81	6	465	55	14	1	29	1.46
43119146--43119324	92	1.9	95	85	3	247	56	16	1	25	1.50
43119829--43119865	19	1.9	20	94	5	67	54	0	0	45	1.00
43122901--43123236	167	2.0	167	100	0	672	28	15	17	38	1.90
43129609--43129713	51	2.1	51	94	0	183	41	8	30	19	1.81
43138350--43138387	15	2.6	15	83	4	51	71	2	7	18	1.23
43139780--43139861	38	2.2	38	86	0	110	35	23	18	23	1.96
43142853--43142896	23	1.9	22	82	17	54	36	25	0	38	1.56
43143037--43143176	51	2.7	51	81	4	183	33	25	16	25	1.96
43144454--43144499	21	2.2	21	88	0	65	30	39	2	28	1.69
43158815--43158850	13	2.8	13	100	0	72	33	25	8	33	1.86
43159251--43159280	16	1.9	15	93	6	51	13	0	6	80	0.91
43159246--43159331	22	3.6	22	76	21	68	20	5	4	68	1.29
43161516--43161624	49	2.2	49	90	3	166	27	30	20	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43164897--43164938	13	3.1	14	83	10	52	76	0	7	16	1.00
43165723--43166281	147	3.7	146	85	8	678	44	10	3	41	1.56
43165723--43166281	299	1.9	298	84	5	768	44	10	3	41	1.56
43170309--43170349	20	2.0	20	85	0	55	68	2	9	19	1.29
43178222--43178249	8	3.5	8	100	0	56	25	0	0	75	0.81
43186161--43186186	13	2.0	13	100	0	52	46	0	0	53	1.00
43188391--43188424	14	2.4	14	100	0	68	41	0	5	52	1.25
43192097--43192227	45	2.9	45	78	2	138	41	12	19	26	1.87
43192318--43192407	27	3.3	27	74	0	90	44	15	17	22	1.86
43205946--43205999	24	2.3	23	82	17	67	62	1	1	33	1.16

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204