genome.fa.s26.2.7.7.80.10.50.1000.181.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Length:  60343961

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  181  of  204  ( 24404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53653531--53653557	3	9.0	3	100	0	54	66	0	0	33	0.92
53657625--53657686	27	2.3	27	83	5	81	56	4	4	33	1.42
53657637--53657689	24	2.2	24	86	0	70	58	3	5	32	1.39
53659040--53659164	42	3.0	42	83	4	146	43	16	22	17	1.88
53659046--53659210	21	7.9	21	70	4	82	43	16	21	18	1.88
53663461--53663665	41	5.0	42	85	6	219	33	25	20	20	1.97
53669943--53670268	113	2.9	113	84	3	413	25	20	25	28	1.99
53670161--53670341	73	2.5	73	87	1	247	26	17	27	28	1.98
53670616--53670663	16	2.9	16	81	3	60	20	2	45	31	1.63
53670633--53670684	22	2.3	23	76	3	61	19	1	42	36	1.62
53673998--53674443	194	2.3	193	85	1	570	28	13	18	39	1.89
53676010--53676119	43	2.6	42	91	4	175	17	16	29	37	1.91
53676156--53676275	59	2.0	59	100	0	240	31	20	18	30	1.96
53676156--53676245	29	3.1	29	63	30	73	31	20	17	31	1.96
53678537--53678596	21	2.9	21	71	0	57	36	18	28	16	1.93
53678539--53678653	42	2.7	42	81	2	133	42	16	22	18	1.89
53683784--53683846	30	2.1	30	93	0	108	58	15	1	23	1.46
53686000--53686025	6	4.3	6	100	0	52	15	0	0	84	0.62
53691079--53691111	6	5.5	6	100	0	66	33	0	0	66	0.92
53696723--53696792	31	2.3	31	79	0	77	41	11	5	41	1.65
53698021--53698137	58	2.0	58	100	0	234	25	22	13	38	1.91
53702419--53702467	15	3.1	15	82	5	53	53	46	0	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53703121--53703159	19	2.1	19	95	0	69	28	5	23	43	1.75
53711618--53711665	24	2.0	23	84	4	60	68	2	4	25	1.18
53713236--53713292	28	2.0	28	82	0	69	19	12	10	57	1.63
53713464--53713508	22	2.1	22	88	12	67	60	13	2	24	1.45
53723581--53723648	8	9.0	8	73	15	56	58	0	0	41	0.98
53723611--53723644	15	2.2	15	89	5	50	67	0	0	32	0.91
53723642--53723672	16	1.9	16	93	0	53	45	3	9	41	1.53
53729242--53729275	12	2.8	12	86	0	50	41	11	11	35	1.78
53735543--53735589	18	2.6	18	74	16	51	55	0	0	44	0.99
53739206--53739239	17	2.0	17	94	0	59	38	11	0	50	1.39
53744684--53744772	29	3.0	29	85	9	108	61	1	2	34	1.15
53744711--53744823	40	2.8	40	81	7	140	61	0	3	34	1.13
53744723--53744782	9	6.4	9	86	7	75	65	0	1	33	1.03
53744802--53744834	10	3.4	10	87	8	50	87	0	0	12	0.53
53744809--53744835	9	3.0	9	100	0	54	88	0	0	11	0.50
53747499--53747541	17	2.5	17	84	3	59	51	0	0	48	1.00
53748093--53748183	47	1.9	47	82	4	112	30	0	12	57	1.35
53748182--53748432	101	2.5	101	98	1	479	28	0	15	55	1.41
53750741--53751023	76	3.8	76	89	3	412	26	8	13	51	1.69
53750741--53751023	151	1.9	151	88	2	426	26	8	13	51	1.69
53754041--53754095	19	3.0	19	73	5	51	60	16	0	23	1.36
53754133--53754185	18	3.0	18	77	2	54	5	26	0	67	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53755488--53755522	7	4.9	7	89	6	52	28	11	31	28	1.92
53755483--53755522	14	2.7	15	84	7	55	27	10	30	32	1.89
53758339--53758378	20	2.0	20	90	0	62	27	10	12	50	1.72
53760187--53760233	18	2.6	19	90	6	71	63	0	6	29	1.19
53760200--53760244	21	2.1	21	88	12	65	68	0	2	28	1.01
53760202--53760241	13	2.9	15	75	17	50	67	0	2	30	1.04
53760303--53760384	9	9.5	8	72	22	51	58	3	6	31	1.40
53762358--53762637	40	6.8	41	78	9	286	22	19	25	31	1.98
53762352--53762637	82	3.5	82	90	1	430	22	19	25	32	1.97
53762816--53763155	72	4.6	72	87	6	486	31	19	17	32	1.95
53763173--53763364	69	2.7	71	81	5	235	34	24	14	26	1.94
53763315--53763446	54	2.5	54	93	1	230	36	20	14	28	1.92
53763246--53763622	176	2.1	176	100	0	754	36	22	14	26	1.93
53763491--53763689	54	3.7	54	92	2	328	36	18	15	30	1.91
53763491--53763689	109	1.8	107	92	2	335	36	18	15	30	1.91
53763695--53764000	73	4.2	73	92	3	494	34	16	16	32	1.92
53763695--53763993	145	2.0	147	94	2	532	33	16	17	32	1.92
53766150--53766211	1	62.0	1	77	0	61	0	6	4	88	0.62
53766153--53766211	27	2.1	27	90	3	91	0	6	5	88	0.64
53766150--53766211	13	4.8	13	80	5	72	0	6	4	88	0.62
53770185--53770216	1	32.0	1	100	0	64	100	0	0	0	0.00
53771452--53771752	86	3.5	84	80	9	279	30	23	22	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53771878--53771993	43	2.7	43	80	9	137	29	25	23	22	1.99
53773475--53773504	3	10.0	3	92	0	51	33	3	0	63	1.11
53775839--53775877	21	1.9	20	89	5	60	28	28	5	38	1.78
53790212--53790397	3	62.0	3	69	16	109	30	3	2	62	1.26
53790224--53790397	23	7.8	22	71	15	117	30	4	2	62	1.28
53790241--53790291	14	3.5	14	86	7	66	33	1	0	64	1.05
53795899--53795929	3	10.3	3	100	0	62	64	0	0	35	0.94
53799401--53799509	51	2.1	51	98	0	209	43	15	11	30	1.81
53810895--53810955	31	2.0	31	90	0	95	29	31	26	13	1.93
53813382--53813422	21	1.9	22	90	5	66	58	7	12	21	1.58
53813431--53813483	25	2.2	23	83	12	63	58	1	11	28	1.43
53816156--53816225	33	2.1	34	86	2	97	28	5	14	51	1.65
53816167--53816240	33	2.3	33	86	6	98	31	6	14	47	1.71
53816211--53816335	29	4.3	29	73	13	98	39	9	12	38	1.76
53816278--53816333	28	2.1	26	86	6	76	39	8	8	42	1.68
53816860--53816954	31	3.1	31	80	6	111	40	2	2	55	1.23
53819068--53819112	22	2.0	24	82	8	58	66	0	0	33	0.92
53819406--53819438	15	2.1	16	88	5	50	36	0	3	60	1.12
53821762--53821790	7	4.1	7	100	0	58	44	13	13	27	1.82
53821813--53821876	31	2.3	27	80	19	78	35	10	25	28	1.89
53821822--53821884	31	2.0	31	100	0	126	33	9	25	31	1.88
53824085--53824131	18	2.6	19	90	6	71	63	0	6	29	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53824098--53824142	21	2.1	21	88	12	65	68	0	2	28	1.01
53824100--53824139	13	2.9	15	75	17	50	67	0	2	30	1.04
53826252--53826531	40	6.8	41	78	9	286	22	20	26	31	1.98
53826246--53826531	82	3.5	82	90	1	430	21	19	25	32	1.97
53826710--53827047	72	4.6	72	88	4	500	31	19	17	31	1.95
53826710--53827047	147	2.3	145	88	4	502	31	19	17	31	1.95
53827065--53827256	69	2.7	71	80	5	226	34	23	14	26	1.94
53827219--53827338	54	2.2	54	95	1	215	37	18	15	28	1.92
53827138--53827514	176	2.1	176	99	0	736	36	22	14	26	1.93
53827383--53827581	54	3.7	54	91	2	319	36	17	15	31	1.91
53827383--53827581	109	1.8	107	91	2	326	36	17	15	31	1.91
53827587--53827892	73	4.2	73	92	3	494	34	16	16	32	1.92
53827587--53827885	145	2.0	147	94	2	532	33	16	17	32	1.92
53829421--53829555	69	2.0	69	82	2	164	16	24	20	38	1.92
53830054--53830116	1	63.0	1	74	0	54	0	7	4	87	0.67
53830054--53830116	9	6.4	10	77	12	60	0	7	4	87	0.67
53830054--53830116	28	2.4	26	84	10	83	0	7	4	87	0.67
53834515--53834569	12	4.6	12	78	13	60	65	0	5	29	1.15
53834515--53834569	3	18.3	3	75	20	53	65	0	5	29	1.15
53834515--53834577	21	3.0	21	86	11	85	65	0	4	30	1.13
53834682--53834746	26	2.5	26	74	18	64	58	1	1	38	1.17
53837125--53837173	21	2.5	21	80	9	59	16	14	2	67	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53838759--53838795	12	3.1	12	88	0	56	59	2	0	37	1.12
53838773--53838799	14	1.9	14	100	0	54	59	0	0	40	0.98
53838934--53839016	3	27.7	3	88	0	121	61	1	3	33	1.21
53840841--53841129	44	6.6	45	72	11	134	29	21	18	30	1.97
53840930--53841144	44	4.9	46	72	12	155	30	21	18	29	1.97
53840824--53841140	175	1.8	175	94	0	562	29	21	18	30	1.97
53843783--53843824	12	3.5	12	84	12	59	35	9	0	54	1.33
53844995--53845090	31	3.1	31	92	3	156	46	14	8	30	1.74
53847128--53847180	27	2.0	27	92	0	88	37	13	0	49	1.42
53849610--53849657	5	9.4	5	80	13	53	20	22	14	41	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204