genome.fa.s26.2.7.7.80.10.50.1000.136.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Length:  60343961

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  136  of  204  ( 24404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41535391--41535468	23	3.2	23	71	15	59	42	0	3	53	1.19
41543031--41543125	40	2.4	40	84	5	113	18	15	23	42	1.89
41545910--41545949	14	2.8	14	80	3	53	62	0	0	37	0.95
41550019--41550056	19	2.0	19	100	0	76	26	5	10	57	1.53
41554505--41554543	3	13.0	3	100	0	78	33	33	0	33	1.58
41561029--41561077	24	2.0	24	96	0	89	46	8	24	20	1.77
41573749--41573786	19	2.0	19	89	0	58	73	10	7	7	1.24
41573721--41573778	30	1.9	31	89	3	91	68	8	12	10	1.38
41579175--41579214	19	2.1	19	90	0	62	30	0	7	62	1.23
41580370--41580405	15	2.5	14	91	8	63	69	8	5	16	1.33
41598265--41598311	20	2.3	20	96	0	85	34	21	21	23	1.97
41603640--41603681	18	2.3	18	80	8	50	28	0	9	61	1.27
41603988--41604048	20	3.0	20	70	0	50	34	21	21	22	1.97
41605545--41605598	18	2.9	18	86	2	72	40	46	1	11	1.50
41605694--41605742	9	5.4	9	90	0	71	24	8	24	42	1.81
41605806--41605863	27	2.1	27	87	0	80	39	8	17	34	1.80
41609046--41609088	21	2.0	21	82	8	52	46	2	4	46	1.36
41611566--41611593	3	9.3	3	100	0	56	32	0	35	32	1.58
41615551--41615745	98	2.0	98	95	0	354	37	25	9	27	1.87
41616408--41616463	26	2.3	25	84	9	71	58	3	5	32	1.37
41617223--41617335	19	5.8	19	83	4	154	34	16	10	38	1.84
41617223--41617334	40	2.8	40	91	2	174	34	16	10	38	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41617520--41618102	44	13.5	43	72	13	337	28	23	19	28	1.99
41617508--41618106	217	2.8	217	95	0	1054	27	23	19	28	1.99
41617653--41617967	173	1.8	173	82	5	404	26	25	19	27	1.99
41618094--41619275	132	9.0	132	96	0	2123	24	25	21	28	1.99
41620540--41620606	1	67.0	1	72	0	53	5	1	5	86	0.76
41620540--41620573	15	2.3	15	100	0	68	11	0	0	88	0.52
41620540--41620606	15	4.2	15	80	14	64	5	1	5	86	0.76
41625018--41625212	98	2.0	98	93	0	336	36	24	10	28	1.88
41625879--41625928	26	2.0	26	88	4	75	56	4	8	32	1.47
41626677--41626789	19	5.8	19	84	4	154	35	15	9	38	1.81
41626677--41626788	40	2.8	39	91	2	172	35	15	9	39	1.80
41628113--41628317	113	1.8	113	88	2	313	26	20	23	29	1.98
41628395--41628441	16	2.8	16	90	6	67	27	2	6	63	1.30
41628709--41628861	7	21.7	7	73	9	60	22	0	37	39	1.59
41628709--41628861	21	7.6	20	68	18	79	22	0	37	39	1.59
41628711--41628861	14	10.7	14	70	6	72	22	0	37	39	1.59
41633344--41633432	42	2.1	42	83	4	108	23	12	29	34	1.91
41633322--41633546	114	2.0	115	91	2	373	26	10	23	40	1.86
41633483--41633674	43	4.5	42	84	4	219	22	18	30	28	1.97
41633494--41633653	85	1.9	85	85	5	225	20	19	30	29	1.97
41633494--41633674	85	2.1	84	83	6	222	22	19	30	27	1.98
41637788--41637828	21	2.0	21	81	18	50	21	26	19	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41646636--41646675	16	2.4	17	87	4	55	0	15	7	77	0.98
41654679--41654711	9	3.7	9	100	0	66	24	12	9	54	1.66
41657191--41657264	29	2.5	29	86	4	94	21	12	16	50	1.77
41659239--41659276	19	2.0	19	94	0	67	26	34	10	28	1.90
41664330--41664519	50	3.7	50	89	4	263	23	32	21	23	1.98
41673467--41673671	102	2.0	102	100	0	410	44	17	17	20	1.87
41680876--41681118	50	4.7	50	81	7	238	27	20	27	24	1.99
41680876--41681118	100	2.4	102	80	8	271	27	20	27	24	1.99
41680890--41681167	150	1.8	153	81	6	350	28	20	27	23	1.99
41683782--41683828	24	2.0	22	84	8	58	21	29	14	34	1.93
41686658--41686696	20	2.0	20	89	0	60	7	30	20	41	1.80
41692287--41692338	3	17.3	3	95	0	95	1	32	0	65	1.04
41693008--41693068	29	2.1	28	85	8	79	27	14	14	42	1.85
41693797--41693886	41	2.2	41	82	9	105	15	32	26	25	1.96
41693896--41693958	29	2.1	29	85	8	83	36	23	17	22	1.95
41704910--41704962	27	1.9	27	84	3	70	64	1	0	33	1.05
41719042--41719075	16	2.2	15	94	5	59	52	0	0	47	1.00
41725989--41726018	15	1.9	16	93	6	53	56	0	0	43	0.99
41733558--41733631	17	4.5	17	71	21	68	54	0	4	41	1.19
41733566--41733648	12	7.4	11	70	25	50	54	1	2	42	1.21
41733527--41733648	48	2.5	48	86	2	156	52	1	3	42	1.27
41737329--41737370	19	2.1	21	91	8	70	40	9	0	50	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41741939--41742009	29	2.5	27	78	14	81	53	1	4	40	1.29
41742708--41742778	26	2.7	27	80	10	76	61	22	1	14	1.40
41742897--41742985	7	12.9	7	73	11	67	42	29	2	25	1.67
41742902--41742960	13	4.4	13	80	4	55	44	32	1	22	1.63
41752559--41752659	37	2.7	37	100	0	202	23	31	18	25	1.98
41752778--41753231	47	9.6	47	92	1	737	28	29	8	33	1.86
41756251--41756287	18	2.1	18	89	0	56	40	18	13	27	1.88
41756256--41756294	18	2.2	18	85	0	51	46	23	10	20	1.81
41756486--41756532	24	2.0	24	91	8	78	42	17	14	25	1.87
41766846--41766885	12	3.2	13	82	13	57	70	0	17	12	1.18
41767037--41767091	28	2.0	27	89	6	85	60	9	9	21	1.55
41769708--41769779	32	2.2	32	95	0	126	34	15	12	37	1.85
41771937--41771974	19	2.0	19	85	10	51	42	0	15	42	1.47
41772318--41772380	18	3.6	18	82	6	67	73	3	11	12	1.22
41772327--41772384	18	3.2	18	82	2	71	74	3	12	10	1.19
41773338--41773378	20	2.0	20	85	4	55	17	19	26	36	1.94
41775299--41775363	20	3.2	20	65	10	51	30	15	32	21	1.94
41775285--41775389	41	2.6	41	86	1	149	35	16	30	18	1.92
41775308--41775377	20	3.5	20	71	11	61	32	17	32	17	1.93
41780452--41780511	30	2.0	30	100	0	120	50	13	13	23	1.77
41780456--41780520	30	2.2	30	91	5	105	52	13	12	21	1.73
41783108--41783139	17	1.9	17	93	6	57	15	9	0	75	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41784075--41784206	66	2.0	66	100	0	264	31	13	15	39	1.86
41786589--41786990	120	3.4	120	92	0	644	43	1	5	49	1.36
41786940--41786974	18	2.0	17	88	5	52	45	0	0	54	0.99
41787131--41787227	45	2.2	45	85	5	126	32	28	5	32	1.79
41787207--41787271	16	4.1	16	87	0	76	26	33	4	35	1.77
41807875--41807925	17	3.0	17	82	0	66	33	9	19	37	1.85
41809905--41809964	24	2.5	24	81	8	59	18	23	6	51	1.69
41810079--41810297	75	2.9	75	84	1	267	31	22	20	25	1.98
41810083--41810297	36	5.8	36	68	15	123	32	22	20	24	1.98
41811708--41811743	18	2.1	18	89	5	56	55	5	0	38	1.23
41813987--41814025	19	2.1	19	85	9	53	35	7	12	43	1.72
41821069--41821110	11	3.8	11	81	12	50	76	16	4	2	1.07
41822669--41822735	34	2.0	34	96	0	125	31	14	10	43	1.80
41830308--41830388	13	5.7	14	71	17	60	18	1	30	49	1.55
41830414--41830455	20	2.1	20	90	0	66	14	0	28	57	1.38
41830494--41830554	27	2.3	27	88	0	86	18	1	32	47	1.58
41830652--41830707	7	7.9	7	76	11	51	16	0	28	55	1.41
41830675--41830719	21	2.1	22	84	15	60	11	0	31	57	1.33
41830780--41830833	20	2.7	21	74	5	58	18	1	27	51	1.56
41830901--41830950	20	2.5	20	90	0	73	18	0	30	52	1.46
41830921--41830977	27	2.1	27	83	0	69	17	0	33	49	1.47
41834724--41834748	13	1.9	13	100	0	50	56	8	16	20	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41835381--41835411	15	2.1	15	93	0	53	32	6	12	48	1.67
41838413--41838589	91	2.0	90	94	3	311	45	2	3	48	1.36
41838539--41838582	17	2.8	16	86	6	54	45	0	2	52	1.13
41838544--41838587	15	2.8	16	86	6	54	47	0	0	52	1.00
41838629--41838925	119	2.5	121	93	2	510	43	2	4	49	1.37
41838882--41838923	15	2.7	16	82	14	52	45	0	2	52	1.13
41838873--41838914	15	2.9	15	82	10	52	47	0	0	52	1.00
41839050--41839159	45	2.6	44	81	8	131	31	29	5	33	1.80
41839138--41839173	16	2.2	16	100	0	72	27	33	0	38	1.57
41852509--41852700	95	2.0	95	94	0	339	29	9	19	41	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204