genome.fa.s26.2.7.7.80.10.50.1000.37.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Length:  60343961

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  37  of  204  ( 24404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10709761--10709836	33	2.3	32	84	8	100	48	17	7	26	1.74
10709826--10709892	34	1.9	35	87	3	100	46	11	8	32	1.72
10710226--10710259	17	2.0	17	88	0	50	58	0	0	41	0.98
10711417--10711456	11	3.6	11	86	0	53	67	10	5	17	1.37
10711417--10711479	22	2.9	22	78	2	56	68	11	3	17	1.33
10712778--10712810	17	1.9	17	88	11	50	57	0	3	39	1.14
10713289--10713316	9	3.1	9	100	0	56	46	10	10	32	1.73
10715513--10716387	100	8.7	101	84	2	1030	22	19	22	34	1.97
10715513--10716376	50	17.2	50	72	5	524	22	19	22	34	1.96
10716512--10716622	44	2.7	41	81	10	120	29	21	18	29	1.97
10716545--10716952	44	8.8	43	69	19	227	28	21	18	31	1.97
10716421--10716919	142	3.6	141	90	5	736	28	20	18	32	1.97
10718325--10718353	8	3.8	8	95	4	51	10	6	0	82	0.83
10724409--10724466	3	19.3	3	74	0	53	62	5	1	31	1.27
10724390--10724424	18	1.9	18	88	11	54	62	8	0	28	1.24
10728984--10729033	24	2.0	24	92	3	82	74	6	0	20	1.03
10728984--10729042	24	2.4	25	83	11	77	72	5	0	22	1.03
10730172--10730214	18	2.4	18	84	7	52	69	4	0	25	1.07
10732510--10732724	23	9.4	22	71	13	125	55	4	6	33	1.46
10732498--10732562	26	2.7	24	78	17	71	56	4	6	32	1.44
10732524--10732663	44	3.1	44	77	14	135	53	2	7	35	1.45
10733983--10734017	10	3.7	10	85	14	56	82	8	0	8	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10734043--10734088	5	8.8	5	86	9	65	82	0	17	0	0.67
10734040--10734088	17	3.0	17	88	8	75	79	0	20	0	0.73
10736396--10736588	45	4.3	45	81	2	176	30	20	22	26	1.98
10736305--10737164	44	19.8	43	70	9	325	30	20	22	27	1.98
10736531--10737113	173	3.4	170	80	5	553	30	20	21	27	1.98
10736828--10737084	132	1.9	131	86	6	358	32	19	20	27	1.97
10738568--10738618	24	2.1	24	89	7	77	29	3	5	60	1.38
10738650--10738818	69	2.4	67	79	11	171	34	7	3	54	1.46
10738703--10738769	13	5.7	12	73	21	61	37	8	1	52	1.42
10738647--10738805	45	3.5	46	81	6	171	35	7	3	54	1.45
10738700--10738873	70	2.5	68	80	6	183	36	6	2	53	1.43
10738647--10738873	24	9.8	23	73	14	164	35	7	3	53	1.45
10739733--10739758	13	2.0	13	100	0	52	23	15	23	38	1.92
10742098--10742141	16	2.7	16	78	3	52	25	20	20	34	1.97
10742181--10742258	17	4.6	17	77	0	57	32	21	20	25	1.98
10742221--10742270	17	2.9	17	81	0	64	30	16	20	34	1.94
10742372--10742414	17	2.4	18	80	7	52	27	18	11	41	1.85
10743621--10743657	18	2.1	18	100	0	74	10	10	35	43	1.75
10747300--10747347	25	1.9	25	86	0	69	22	29	12	35	1.91
10753815--10753859	23	2.0	23	100	0	90	17	22	26	33	1.96
10755471--10755606	40	3.5	39	77	7	150	34	24	16	25	1.95
10756419--10756484	10	6.2	10	74	17	53	6	19	3	71	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10756482--10756561	12	6.2	14	72	21	50	38	2	1	57	1.20
10756483--10756548	26	2.6	26	83	9	75	37	3	1	57	1.23
10762383--10762446	30	2.1	30	97	0	119	31	12	26	29	1.93
10763921--10763998	27	2.8	29	79	11	76	25	15	28	30	1.96
10765915--10765953	19	2.1	19	85	4	53	71	0	0	28	0.86
10770906--10770996	29	3.1	29	80	3	101	54	1	2	41	1.19
10779436--10779467	1	32.0	1	100	0	64	0	0	100	0	0.00
10782019--10782060	18	2.3	18	88	8	59	23	52	4	19	1.65
10786609--10786659	18	2.8	18	85	5	68	33	0	3	62	1.13
10794046--10794110	3	22.0	3	80	3	60	60	1	6	32	1.31
10795692--10795806	51	2.3	51	81	0	131	25	24	17	33	1.96
10795952--10796556	44	13.8	43	65	11	197	25	25	18	29	1.98
10795902--10796686	132	5.9	132	90	0	1126	25	25	18	30	1.98
10806861--10806894	16	2.1	16	88	0	50	44	20	14	20	1.87
10808069--10808093	13	1.9	13	100	0	50	56	8	8	28	1.57
10808349--10808378	4	7.8	4	92	7	53	80	0	0	20	0.72
10809068--10809115	22	2.2	22	96	0	87	68	6	8	16	1.35
10815542--10815579	2	19.0	2	100	0	76	0	50	0	50	1.00
10816994--10817026	12	2.8	12	90	4	50	21	18	18	42	1.89
10817503--10817570	30	2.3	29	82	10	75	48	2	1	47	1.26
10817660--10817700	20	2.0	20	90	0	64	31	9	9	48	1.69
10817751--10817791	13	3.2	13	78	0	55	34	26	4	34	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10817740--10817791	26	2.0	26	81	7	61	38	23	3	34	1.73
10820081--10820120	16	2.4	16	87	4	53	55	0	2	42	1.13
10821995--10822031	9	4.1	9	92	0	65	29	10	13	45	1.77
10822086--10822116	9	3.4	9	90	0	53	38	22	12	25	1.90
10823048--10823179	50	2.7	48	87	7	151	28	22	28	20	1.99
10832590--10832616	11	2.5	11	100	0	54	85	7	0	7	0.75
10835226--10835258	17	1.9	17	93	0	57	30	24	12	33	1.91
10840156--10840281	66	1.9	65	84	9	166	23	24	24	26	2.00
10842795--10842978	79	2.3	81	82	8	216	25	27	22	25	2.00
10842793--10842978	40	4.6	41	81	9	206	25	27	22	24	2.00
10844737--10844802	31	2.2	31	83	8	82	42	46	6	4	1.48
10845838--10845904	3	22.3	3	84	6	91	31	4	1	62	1.24
10846338--10846372	17	2.1	17	88	0	52	34	5	5	54	1.48
10846336--10846372	19	2.1	17	90	10	56	35	5	5	54	1.47
10858640--10858886	46	5.7	46	71	14	159	32	20	19	27	1.97
10859361--10859426	31	2.2	31	83	8	82	42	46	6	4	1.48
10860460--10860520	3	20.3	3	83	6	79	31	4	1	62	1.26
10860957--10860993	18	2.1	18	89	0	56	32	5	5	56	1.45
10860955--10860993	20	2.1	18	90	9	60	33	5	5	56	1.43
10862428--10862539	27	4.1	27	76	14	113	25	23	15	35	1.94
10862417--10862536	54	2.2	53	84	8	145	26	24	15	33	1.95
10863692--10863749	29	2.0	29	100	0	116	27	31	17	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10866658--10866704	21	2.2	21	88	7	69	27	31	10	29	1.90
10873082--10873115	17	1.9	18	88	5	52	20	23	0	55	1.43
10878769--10878813	24	1.9	23	82	13	56	33	13	6	46	1.69
10892575--10892608	12	2.8	12	95	0	59	17	20	35	26	1.95
10894721--10894784	21	2.8	22	74	11	58	12	20	20	46	1.82
10900576--10900615	13	3.0	14	82	17	50	42	2	0	55	1.13
10900709--10900764	15	3.7	15	73	20	53	46	0	0	53	1.00
10900645--10900756	21	5.1	22	65	25	60	45	0	2	51	1.15
10901611--10901641	3	10.3	3	100	0	62	67	0	0	32	0.91
10904652--10904678	5	5.4	5	100	0	54	0	40	0	59	0.98
10906086--10906152	35	1.9	35	93	0	116	34	37	8	19	1.83
10906495--10906698	102	2.0	103	79	4	225	36	7	6	49	1.57
10907082--10907120	21	1.9	20	94	5	69	41	0	0	58	0.98
10907115--10907153	13	2.9	13	88	7	60	43	5	12	38	1.65
10907117--10907191	29	2.6	27	76	12	69	46	5	10	37	1.61
10907346--10907383	14	2.8	13	88	7	58	44	5	13	36	1.66
10907347--10907421	29	2.6	27	76	12	69	46	5	10	37	1.61
10907640--10907871	35	6.8	35	82	5	260	19	23	16	40	1.90
10907641--10907881	67	3.6	67	84	3	320	19	22	16	41	1.89
10910679--10910722	20	2.1	22	84	16	58	13	9	9	68	1.40
10916335--10916378	20	2.1	22	84	16	58	68	9	9	13	1.40
10919182--10919378	67	2.9	66	84	5	227	42	17	21	18	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10919182--10919378	35	5.8	35	83	5	217	42	17	21	18	1.90
10919172--10919378	102	2.0	102	90	0	324	43	17	20	18	1.88
10920235--10920297	7	8.7	7	85	3	81	46	36	0	17	1.49
10925050--10925114	34	1.9	34	93	6	114	47	0	3	49	1.17
10926785--10926821	9	4.1	9	92	0	65	29	10	13	45	1.77
10927077--10927160	43	1.9	44	90	2	134	44	3	38	14	1.62
10940174--10940363	98	1.9	98	97	0	362	36	22	7	34	1.82
10942060--10942137	29	2.7	29	73	15	81	19	21	10	48	1.78
10948392--10948419	8	3.5	8	100	0	56	89	0	0	10	0.49
10951448--10951586	33	4.2	33	90	1	217	40	33	10	15	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204