genome.fa.s26.2.7.7.80.10.50.1000.153.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Length:  60343961

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  153  of  204  ( 24404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46553013--46553055	17	2.4	18	88	3	61	20	18	0	60	1.36
46553006--46553055	23	2.2	23	88	0	73	22	18	0	60	1.37
46553036--46553063	12	2.3	12	100	0	56	28	10	0	60	1.30
46553012--46553061	23	2.2	23	81	0	55	26	16	0	58	1.38
46553157--46553210	17	3.1	17	75	24	58	29	12	0	57	1.36
46553192--46553294	5	18.6	5	72	18	62	32	16	0	51	1.45
46553181--46553282	39	2.6	39	86	9	138	32	16	0	50	1.45
46553219--46553298	28	2.9	28	81	7	99	31	15	0	53	1.42
46553370--46553442	21	3.6	21	82	10	82	24	13	0	61	1.32
46553621--46553702	12	6.9	11	71	16	58	28	19	0	52	1.46
46553790--46553873	23	3.6	23	79	14	75	28	11	1	58	1.41
46553787--46553923	29	4.8	27	71	19	66	27	13	1	56	1.46
46554305--46554377	22	3.2	22	67	18	60	38	0	9	52	1.34
46557479--46557675	106	1.9	107	85	3	281	32	23	15	27	1.95
46564412--46564477	23	2.9	23	81	0	87	33	18	27	21	1.96
46564410--46564484	23	3.3	23	75	7	71	33	20	26	20	1.97
46575458--46575508	26	2.0	26	96	0	93	29	35	23	11	1.90
46575221--46575584	102	3.6	104	93	4	600	30	30	20	18	1.97
46575908--46575971	30	2.2	29	81	10	76	29	28	6	35	1.82
46575915--46575971	30	1.9	30	85	3	80	29	24	7	38	1.82
46582796--46583163	103	3.6	104	94	2	627	30	29	20	19	1.97
46583491--46583554	30	2.2	29	81	10	76	29	28	6	35	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46583498--46583554	30	1.9	30	85	3	80	29	24	7	38	1.82
46585795--46585854	28	2.1	28	81	6	68	68	5	21	5	1.29
46598780--46598816	16	2.3	16	90	9	58	37	0	0	62	0.96
46598787--46598838	19	2.7	20	73	8	54	34	0	3	61	1.14
46599266--46599325	31	1.9	31	86	6	86	55	10	1	33	1.43
46603346--46603405	31	2.0	30	80	6	68	31	3	13	51	1.57
46603731--46603808	21	3.7	21	74	17	72	35	8	16	38	1.80
46603729--46603785	21	2.8	20	87	7	80	36	10	17	35	1.84
46610676--46611241	88	6.4	88	90	1	796	25	22	25	25	2.00
46611239--46611744	88	5.8	88	88	0	714	25	22	26	25	2.00
46611303--46611693	45	8.9	44	64	12	131	26	23	26	24	2.00
46610743--46611778	480	2.2	480	85	2	1337	25	22	26	25	2.00
46611705--46612209	44	11.5	44	83	2	577	30	14	24	30	1.95
46611708--46612209	133	3.8	131	83	6	584	30	14	24	30	1.95
46611705--46612179	221	2.2	219	89	1	718	30	14	24	31	1.95
46612552--46612604	21	2.7	19	86	11	79	35	13	15	35	1.86
46615971--46616010	14	3.0	13	89	7	62	50	0	0	50	1.00
46619257--46619292	18	1.9	19	88	5	56	27	2	5	63	1.30
46619259--46619308	21	2.5	21	78	18	61	28	2	6	64	1.28
46635345--46635440	30	3.2	30	90	0	156	21	16	44	16	1.86
46641896--46641920	10	2.5	10	100	0	50	44	0	0	56	0.99
46647651--46648548	447	2.0	447	97	0	1688	40	16	13	29	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46649037--46649101	18	3.5	18	78	12	69	9	23	1	66	1.29
46653522--46653556	18	1.9	18	88	0	52	14	37	8	40	1.76
46665341--46665444	52	2.0	52	92	0	172	29	12	18	39	1.87
46675518--46675616	49	2.0	49	92	0	162	26	24	7	42	1.80
46679623--46679652	16	1.9	16	93	6	53	26	16	3	53	1.59
46679608--46679693	43	2.0	43	88	4	129	24	23	2	50	1.61
46684475--46684520	23	2.0	23	91	0	74	54	10	23	10	1.67
46685085--46685274	87	2.2	85	82	9	226	44	14	6	34	1.71
46685342--46685451	19	5.8	20	71	10	70	64	0	3	30	1.17
46685342--46685451	9	11.7	9	68	15	53	64	0	3	30	1.17
46685324--46685457	10	13.9	10	73	14	70	60	0	2	35	1.17
46685642--46685704	19	3.3	19	75	0	72	25	3	3	68	1.19
46685640--46685794	78	2.0	76	81	7	179	28	3	1	65	1.20
46685723--46685777	19	2.9	18	76	12	58	38	1	1	58	1.20
46686567--46686597	5	6.2	5	100	0	62	0	19	61	19	1.35
46687873--46687909	4	9.2	4	100	0	74	24	0	24	51	1.49
46699597--46699639	22	2.0	22	100	0	86	37	0	32	30	1.58
46700035--46700170	42	3.2	41	82	4	139	18	24	16	41	1.90
46700105--46700170	21	3.1	21	71	0	51	16	28	15	39	1.89
46701063--46701190	45	2.8	45	96	0	238	31	27	14	26	1.95
46701219--46701375	56	2.8	56	90	0	242	30	8	15	45	1.76
46704669--46704822	56	2.8	55	84	3	202	31	9	14	44	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46705410--46705443	16	2.2	16	89	5	52	55	11	0	32	1.36
46706395--46706444	25	2.0	25	100	0	100	32	20	24	24	1.98
46713451--46713499	26	1.9	25	83	4	62	28	8	8	55	1.58
46714134--46714200	31	2.2	31	84	5	84	22	13	10	53	1.69
46721709--46721803	37	2.6	36	76	15	97	35	11	2	50	1.51
46724964--46725029	20	3.4	20	82	17	86	75	7	12	4	1.16
46724966--46725029	21	3.2	20	85	14	89	78	7	10	3	1.07
46725463--46725500	11	3.5	11	89	10	60	84	0	15	0	0.63
46725463--46725524	12	5.2	12	84	3	56	79	3	17	0	0.87
46725467--46725525	18	3.3	18	79	15	61	76	3	20	0	0.93
46726788--46727477	45	15.3	45	85	6	934	28	16	23	30	1.97
46726784--46727496	90	7.9	90	90	0	1104	28	17	24	29	1.97
46727587--46727698	50	2.2	50	84	3	136	29	19	24	26	1.98
46727587--46727717	50	2.6	50	79	2	129	28	21	22	27	1.99
46730560--46730604	22	2.0	22	83	8	56	46	13	6	33	1.69
46732697--46732758	29	2.1	29	85	5	81	19	20	27	32	1.97
46734128--46734196	31	2.2	31	79	5	77	55	4	5	34	1.44
46743377--46743562	51	3.7	49	80	5	203	23	18	26	31	1.97
46743380--46743564	101	1.8	102	89	3	293	23	18	26	31	1.97
46743386--46743570	102	1.8	101	87	3	246	24	18	26	30	1.98
46747041--46747106	22	3.0	22	84	8	73	18	25	22	33	1.97
46747075--46747152	22	3.5	22	84	5	95	19	28	20	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46754174--46754235	3	20.7	3	88	6	90	61	1	0	37	1.06
46758315--46758363	10	5.1	10	73	16	50	46	0	2	51	1.12
46758578--46758637	27	2.2	27	93	0	102	26	28	5	40	1.77
46758578--46758640	16	4.2	16	71	19	64	26	26	4	41	1.76
46769480--46769554	31	2.4	31	75	4	80	34	6	5	53	1.50
46770924--46770985	29	2.1	29	85	5	81	32	27	20	19	1.97
46772355--46772381	12	2.2	12	100	0	54	37	14	14	33	1.88
46772827--46772869	5	8.2	5	80	10	50	72	0	0	27	0.85
46781004--46781165	42	3.9	41	76	9	157	22	17	27	32	1.96
46781009--46781156	41	3.5	42	75	8	124	23	18	27	31	1.97
46783301--46783387	42	2.1	41	89	4	131	18	29	32	19	1.96
46784186--46784231	23	2.0	23	95	0	83	43	10	21	23	1.84
46784583--46784664	25	3.2	25	84	6	85	31	20	24	23	1.98
46784603--46784664	25	2.5	24	89	2	97	30	19	25	24	1.98
46784762--46784816	26	2.1	26	83	6	67	38	20	23	18	1.93
46785453--46785494	20	2.1	20	86	8	59	38	11	2	47	1.53
46789197--46789440	50	4.9	50	78	4	215	28	20	27	23	1.99
46789326--46789440	49	2.3	49	82	7	135	29	20	26	24	1.99
46796781--46797018	50	4.8	50	82	5	261	26	20	28	24	1.99
46802346--46802415	26	2.7	26	95	0	122	34	21	25	18	1.96
46806775--46806841	33	2.0	33	94	0	116	34	17	2	44	1.64
46810103--46810150	18	2.7	17	78	9	60	39	16	2	41	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46811068--46811102	17	2.0	18	88	5	54	11	48	28	11	1.74
46822530--46822599	35	2.0	36	82	2	88	48	1	5	44	1.35
46824802--46824850	23	2.2	22	82	10	55	34	4	14	46	1.63
46831441--46831470	2	15.0	2	92	0	51	46	0	0	53	1.00
46832537--46832580	18	2.4	18	92	0	70	40	40	2	15	1.60
46832683--46832758	9	8.4	9	86	0	98	25	9	25	40	1.84
46832683--46832758	18	4.2	18	91	0	116	25	9	25	40	1.84
46833959--46833988	5	6.0	5	100	0	60	20	0	20	60	1.37
46840795--46840871	22	3.6	21	89	5	109	32	28	1	37	1.66
46840843--46840901	30	2.0	30	93	0	100	30	35	0	33	1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204