genome.fa.s26.2.7.7.80.10.50.1000.113.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Length:  60343961

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  113  of  204  ( 24404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35057249--35057302	19	2.8	19	88	0	90	37	14	9	38	1.79
35059553--35059579	7	3.9	7	100	0	54	59	0	11	29	1.32
35060315--35060384	3	23.0	3	85	8	88	65	0	2	31	1.07
35061383--35061453	20	3.5	20	84	0	97	5	22	25	46	1.73
35070085--35070130	20	2.3	20	88	0	65	23	23	32	19	1.97
35070912--35070973	24	2.6	24	86	0	79	37	1	25	35	1.66
35074045--35074089	22	2.0	22	91	0	72	46	22	2	28	1.63
35075148--35075190	18	2.3	19	84	4	52	32	20	32	13	1.92
35076358--35076434	13	5.9	13	92	0	118	24	11	24	38	1.89
35084245--35084399	57	2.7	55	84	10	163	50	5	2	41	1.40
35084272--35084399	57	2.2	58	89	6	190	50	4	3	41	1.39
35087024--35087079	27	2.1	27	96	0	103	33	8	14	42	1.77
35088612--35088818	40	5.2	40	83	0	261	21	28	18	31	1.97
35088614--35088835	120	1.9	119	87	4	331	20	28	18	32	1.96
35095480--35095646	40	4.2	40	84	1	210	21	26	19	32	1.97
35095480--35095673	40	4.9	40	80	1	203	21	26	18	34	1.96
35095500--35095673	79	2.2	79	87	0	240	19	27	17	35	1.94
35099823--35099860	6	6.3	6	82	11	51	0	50	2	47	1.15
35101151--35101203	22	2.5	20	72	19	54	64	0	0	35	0.94
35104187--35104662	237	2.0	233	83	7	588	43	7	9	39	1.64
35106175--35106206	2	16.0	2	100	0	64	50	0	50	0	1.00
35108209--35108255	13	3.8	13	81	13	64	36	0	0	63	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35108209--35108255	12	3.9	12	83	5	60	36	0	0	63	0.94
35109852--35110111	40	6.1	41	70	21	148	30	0	13	55	1.42
35109835--35110020	101	1.9	100	90	3	302	29	0	13	57	1.37
35109854--35110042	41	4.7	40	73	17	167	29	0	13	57	1.36
35109854--35109919	22	3.2	22	81	14	86	27	0	10	62	1.28
35110104--35110188	25	3.3	24	71	22	66	35	0	10	54	1.35
35110250--35110330	37	2.2	37	90	2	126	51	1	2	44	1.22
35110367--35110408	16	2.7	15	85	7	57	38	2	2	57	1.25
35113972--35114298	47	6.9	47	92	0	483	31	10	30	27	1.90
35114170--35114291	22	5.3	22	63	24	63	33	13	28	24	1.93
35119856--35119921	27	2.4	27	80	5	80	21	36	22	19	1.95
35124351--35124399	20	2.7	18	77	22	57	51	4	2	42	1.32
35131357--35131391	18	1.9	18	88	11	54	28	0	8	62	1.24
35131399--35131445	16	2.8	16	78	12	51	31	4	4	59	1.36
35131622--35131663	16	2.7	16	85	3	59	35	0	4	59	1.19
35131622--35131663	14	3.1	13	78	21	50	35	0	4	59	1.19
35138996--35139051	21	2.8	21	80	20	66	46	10	0	42	1.38
35164242--35164534	50	5.8	50	92	0	460	25	23	31	19	1.98
35167568--35167592	10	2.5	10	100	0	50	24	8	0	68	1.16
35174016--35174045	9	3.3	9	95	0	51	76	13	0	10	1.01
35177446--35177620	71	2.5	71	86	1	226	28	21	20	29	1.98
35184869--35184903	12	2.7	13	86	13	54	37	28	0	34	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35185702--35185746	16	2.8	17	78	21	53	37	4	0	57	1.19
35188022--35188065	22	1.9	24	86	9	65	45	2	9	43	1.48
35188166--35188207	20	2.1	20	86	8	59	45	7	7	40	1.59
35188437--35188500	13	4.9	13	86	0	92	28	7	28	35	1.85
35203721--35203749	11	2.5	12	94	5	51	79	3	0	17	0.87
35205389--35205717	44	7.5	44	68	17	141	26	22	20	30	1.99
35205831--35206127	100	3.0	100	85	0	416	25	23	21	29	1.99
35205833--35206080	50	5.0	50	65	9	155	26	23	20	29	1.99
35206327--35206488	88	1.8	88	93	0	279	27	27	19	26	1.99
35206338--35206476	45	3.1	45	72	4	138	28	28	17	25	1.97
35218636--35218714	27	2.9	27	84	0	104	55	3	2	37	1.31
35218638--35218719	25	3.2	25	77	6	83	54	3	2	39	1.31
35220023--35220062	17	2.5	15	81	14	53	5	17	35	42	1.71
35222658--35222719	30	2.1	29	81	3	70	46	20	1	30	1.60
35223130--35223173	22	1.9	24	86	9	65	43	2	13	40	1.57
35223273--35223314	20	2.1	20	90	0	66	50	4	7	38	1.51
35225297--35225341	23	2.0	23	82	4	56	28	11	11	48	1.73
35231151--35231191	19	2.2	19	95	4	75	51	0	0	48	1.00
35238702--35238738	15	2.5	15	84	16	51	37	8	2	51	1.46
35243414--35243654	50	4.7	50	83	4	241	23	28	22	25	1.99
35243414--35243659	100	2.4	104	82	5	277	22	28	22	26	1.99
35249436--35249464	13	2.2	13	100	0	58	41	27	0	31	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35257485--35257587	37	2.9	35	75	16	86	42	1	3	51	1.31
35261211--35261274	13	4.9	13	81	7	85	29	7	26	35	1.85
35271733--35271762	4	7.5	4	100	0	60	76	0	0	23	0.78
35271815--35271855	15	2.4	18	80	11	52	65	7	7	19	1.41
35271809--35271904	39	2.5	39	78	11	92	67	6	5	20	1.32
35274368--35274397	14	2.1	14	93	0	51	40	0	43	16	1.48
35277203--35277269	29	2.3	28	75	14	66	74	1	1	22	0.98
35277650--35277758	54	2.0	54	96	0	200	32	18	12	36	1.89
35279553--35279597	10	4.1	12	78	18	53	26	0	0	73	0.84
35279552--35279593	22	1.9	22	95	0	75	26	0	0	73	0.83
35280356--35280675	41	7.8	41	77	5	281	15	25	24	35	1.94
35280356--35280675	82	3.9	82	85	2	376	15	25	24	35	1.94
35281148--35281185	15	2.5	15	86	0	58	21	0	42	36	1.53
35281121--35281188	15	4.9	14	74	13	52	23	0	35	41	1.55
35285909--35285961	21	2.5	21	87	9	81	41	1	0	56	1.10
35285912--35285970	21	2.9	19	83	16	66	44	1	1	52	1.21
35286009--35286445	16	25.9	16	66	22	127	45	18	2	33	1.62
35286061--35286085	13	1.9	13	100	0	50	40	24	0	36	1.55
35286074--35286245	39	4.5	38	68	16	113	46	18	1	33	1.57
35286138--35286502	9	42.8	9	70	16	242	45	19	3	32	1.66
35286138--35286513	25	14.7	25	71	14	227	45	19	2	32	1.65
35286207--35286475	118	2.3	119	85	5	368	44	19	3	32	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35286207--35286443	59	4.0	59	91	2	361	45	19	2	32	1.65
35294909--35294958	18	2.7	19	81	9	68	36	16	34	14	1.88
35295809--35295875	29	2.2	31	86	7	93	41	13	16	28	1.86
35296258--35296452	27	7.2	27	81	2	212	20	15	22	42	1.89
35296256--35296462	81	2.6	81	85	0	270	19	15	22	42	1.89
35296269--35296452	54	3.4	53	87	3	251	19	16	21	43	1.88
35305061--35305125	20	3.3	19	80	8	67	40	6	13	40	1.70
35305322--35305369	19	2.6	19	83	3	62	35	2	12	50	1.52
35309956--35309995	19	2.2	18	95	4	71	40	2	15	42	1.60
35316755--35316819	33	2.0	33	100	0	130	35	15	6	43	1.72
35332956--35333019	30	2.1	31	91	2	103	26	25	6	42	1.78
35338063--35338191	50	2.6	50	79	8	136	28	21	26	23	1.99
35349420--35349937	27	19.3	27	84	1	610	44	22	16	16	1.87
35358775--35358844	17	4.2	16	75	8	52	20	2	22	54	1.58
35363486--35363530	23	2.0	23	90	0	72	33	8	17	40	1.81
35374722--35374846	61	2.1	59	80	5	135	49	6	2	41	1.41
35375362--35375429	27	2.6	25	83	9	73	19	35	2	42	1.66
35375776--35375813	19	2.0	19	89	0	58	28	5	31	34	1.80
35377064--35377094	16	1.9	16	93	0	53	48	12	9	29	1.73
35378084--35378132	24	2.0	24	100	0	98	16	24	8	51	1.71
35378158--35378220	25	2.4	25	86	5	81	63	11	9	15	1.51
35380467--35380500	8	4.4	8	96	3	61	11	0	35	52	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35384644--35384689	21	2.2	23	81	14	55	47	10	8	32	1.69
35387936--35387967	15	2.2	15	94	5	57	37	3	6	53	1.42
35391428--35391498	35	2.0	35	94	0	124	21	18	12	47	1.81
35392644--35392726	42	2.0	42	97	0	157	43	4	26	25	1.74
35393750--35393790	16	2.6	16	81	14	50	58	4	7	29	1.46
35394271--35394449	66	2.7	66	80	1	198	25	25	26	21	2.00
35395722--35395793	36	2.0	35	86	7	101	26	25	13	34	1.93
35398300--35398349	3	17.3	3	91	8	86	30	0	0	70	0.88
35398300--35398349	23	2.2	23	100	0	100	30	0	0	70	0.88
35398302--35398341	20	2.0	20	100	0	80	30	0	0	70	0.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204