genome.fa.s26.2.7.7.80.10.50.1000.151.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Length:  60343961

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  151  of  204  ( 24404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45979594--45979699	56	1.9	56	96	0	194	53	15	6	24	1.65
45980160--45980207	18	2.7	18	93	0	78	39	14	12	33	1.84
45983587--45983638	24	2.2	24	89	6	79	53	9	1	34	1.45
45992994--45993084	24	4.0	22	75	12	76	38	0	1	60	1.04
45994866--45994906	21	2.0	21	90	0	64	46	17	0	36	1.48
46002141--46002211	26	2.8	25	76	4	79	35	21	26	16	1.95
46002640--46002694	10	5.4	10	82	4	56	43	14	0	41	1.45
46002640--46002695	21	2.8	20	81	5	58	42	16	0	41	1.48
46002669--46002695	5	5.4	5	100	0	54	37	22	0	40	1.54
46003198--46003225	13	2.2	13	100	0	56	21	14	0	64	1.29
46007939--46007965	5	5.4	5	100	0	54	18	0	0	81	0.69
46010491--46010517	5	5.4	5	100	0	54	81	0	0	18	0.69
46010526--46010586	28	2.2	28	88	5	88	32	22	9	34	1.87
46016186--46016232	21	2.2	22	92	3	78	21	38	19	21	1.94
46020446--46020510	21	2.9	24	71	15	66	56	4	1	36	1.29
46028806--46028898	46	2.0	45	85	6	125	45	40	3	10	1.55
46028814--46028898	23	3.8	22	83	9	109	45	38	3	11	1.58
46028863--46028932	34	2.0	35	91	2	115	52	31	1	14	1.50
46028885--46028910	12	2.2	12	100	0	52	57	26	0	15	1.38
46028840--46028956	57	2.0	58	86	4	166	49	34	2	13	1.56
46035422--46035509	25	3.5	25	72	17	74	26	22	20	30	1.98
46040256--46040440	37	5.1	37	86	2	266	42	27	11	17	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46040256--46040441	73	2.5	74	85	1	268	42	27	11	18	1.85
46050816--46050870	27	2.0	27	86	6	76	32	14	9	43	1.77
46052342--46052379	20	2.0	19	90	10	60	36	18	13	31	1.89
46053501--46053542	19	2.3	18	80	11	50	61	2	26	9	1.39
46059379--46059411	16	2.0	17	88	5	50	33	6	27	33	1.81
46061211--46061250	13	3.2	13	85	3	55	22	27	35	15	1.94
46069547--46069602	29	1.9	29	85	0	76	37	12	7	42	1.70
46073576--46073628	26	2.0	26	100	0	106	37	7	7	47	1.60
46077080--46077125	21	2.2	20	81	7	56	36	0	15	47	1.45
46080495--46080524	15	2.0	15	100	0	60	53	0	13	33	1.40
46087128--46087165	18	2.1	18	100	0	76	57	5	10	26	1.53
46088448--46088484	17	2.2	17	90	0	56	56	8	13	21	1.63
46093221--46093280	27	2.2	27	87	0	84	20	33	21	25	1.97
46093317--46093608	106	2.8	103	86	7	387	55	14	0	28	1.44
46094093--46094125	16	2.0	17	88	5	50	24	0	0	75	0.80
46105908--46105960	17	2.8	19	75	16	56	28	13	16	41	1.86
46106258--46106296	17	2.2	17	86	4	51	30	2	5	61	1.31
46110438--46110567	43	2.9	45	79	5	147	41	15	19	23	1.89
46110592--46110698	45	2.4	45	88	0	169	41	18	21	18	1.91
46112182--46112223	20	2.1	20	86	8	59	19	4	19	57	1.58
46112683--46112946	59	4.5	58	81	5	291	51	12	12	23	1.73
46112683--46112946	29	9.0	29	79	10	243	51	12	12	23	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46112683--46112946	117	2.2	116	86	4	361	51	12	12	23	1.73
46122168--46122421	138	1.8	137	85	2	357	35	25	19	19	1.96
46125392--46125900	215	2.3	215	90	1	822	33	18	17	30	1.94
46125370--46125900	108	4.9	108	89	4	768	33	17	18	30	1.94
46126327--46126386	3	19.7	3	77	16	61	61	0	3	35	1.12
46127099--46127137	18	2.2	18	86	4	53	69	5	10	15	1.34
46135003--46135071	5	13.8	5	78	15	72	81	0	18	0	0.70
46136330--46136440	44	2.5	44	85	5	145	30	13	27	27	1.94
46136365--46136520	44	3.5	44	79	3	145	27	20	24	27	1.99
46137100--46137249	44	3.4	44	77	10	155	30	16	25	28	1.97
46139677--46139858	27	5.6	33	70	21	118	19	19	27	33	1.96
46139671--46139899	102	2.2	103	92	1	388	21	17	27	32	1.96
46139802--46139971	76	2.2	76	89	2	252	22	17	26	34	1.96
46139802--46140014	76	2.8	74	81	7	232	22	18	25	32	1.97
46143968--46144023	21	2.8	19	89	10	94	37	10	16	35	1.83
46144002--46144046	23	2.0	22	82	4	54	40	6	17	35	1.76
46144245--46144289	23	2.0	23	81	0	54	22	0	15	62	1.33
46144416--46144464	23	2.2	22	82	10	55	36	2	0	61	1.08
46144705--46144759	26	2.1	26	83	6	67	36	10	1	50	1.48
46144948--46144977	3	10.0	3	100	0	60	33	0	0	66	0.92
46150323--46150359	9	4.3	9	86	13	60	56	10	0	32	1.34
46150325--46150362	16	2.4	16	95	0	67	55	10	0	34	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46150432--46150473	16	2.6	16	92	0	66	42	7	2	47	1.43
46150447--46150502	23	2.5	23	82	2	69	42	1	1	53	1.21
46151604--46151833	102	2.2	103	89	3	356	21	18	26	33	1.96
46151738--46151947	76	2.8	76	78	2	235	20	19	26	34	1.96
46154062--46154102	15	2.7	16	77	11	50	39	9	0	51	1.35
46154265--46154289	4	6.2	4	100	0	50	24	0	0	76	0.80
46155714--46155746	14	2.4	14	90	5	50	45	3	3	48	1.33
46165721--46165805	35	2.7	32	83	10	104	25	17	15	41	1.89
46178505--46178541	18	2.1	17	90	5	56	27	2	2	67	1.17
46179663--46179705	20	2.2	20	86	0	59	39	18	6	34	1.78
46179680--46179730	15	3.4	15	91	0	75	35	21	13	29	1.92
46179667--46179734	30	2.3	30	86	0	91	33	22	10	33	1.88
46180357--46180452	49	2.0	49	83	4	122	25	40	15	18	1.90
46184119--46184212	48	2.0	48	95	0	170	43	6	20	29	1.76
46186234--46186286	21	2.5	21	79	11	63	13	15	43	28	1.84
46186327--46186351	12	2.1	12	100	0	50	16	32	24	28	1.96
46188892--46188962	35	2.0	35	91	0	115	33	23	5	36	1.79
46194016--46194086	35	2.0	35	94	0	124	29	25	8	36	1.85
46206043--46206085	17	2.5	17	88	7	61	13	23	34	27	1.93
46206110--46206143	17	2.0	17	94	0	59	11	14	35	38	1.83
46208150--46208187	19	2.0	19	100	0	76	36	15	15	31	1.90
46215744--46215837	9	10.4	9	82	8	120	41	21	10	26	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46216672--46216715	17	2.4	19	77	7	56	31	0	2	65	1.05
46216658--46216742	28	3.0	28	73	11	84	35	0	2	62	1.08
46217320--46217525	79	2.6	79	82	3	254	41	15	14	28	1.87
46219719--46219913	97	2.0	97	97	0	372	20	23	13	43	1.86
46222467--46222510	23	1.9	23	85	0	61	61	13	4	20	1.50
46223808--46223837	3	10.0	3	92	0	51	63	0	3	33	1.11
46225609--46225749	44	3.2	44	94	2	248	27	24	14	32	1.95
46225873--46226035	50	3.3	50	71	0	155	23	25	20	30	1.99
46225899--46226086	100	1.9	100	92	2	315	23	23	22	30	1.99
46238168--46238200	3	11.0	3	93	0	57	63	0	3	33	1.10
46243952--46244061	50	2.2	50	86	1	150	30	10	30	28	1.91
46244242--46244420	39	4.6	39	85	1	225	32	5	20	42	1.73
46244242--46244420	77	2.3	78	85	0	216	32	5	20	42	1.73
46249148--46249234	42	2.1	40	93	4	147	20	20	18	40	1.92
46249780--46249852	26	2.8	26	85	6	85	50	6	12	30	1.66
46249805--46249864	26	2.3	26	97	0	111	41	8	13	36	1.74
46253080--46253109	15	2.0	15	100	0	60	80	0	20	0	0.72
46253103--46253535	89	4.3	106	74	18	438	41	13	15	28	1.86
46253328--46253535	109	1.9	110	90	5	334	41	12	14	31	1.84
46253744--46254116	109	3.4	108	83	7	481	28	17	14	39	1.89
46254102--46254133	16	2.0	16	100	0	64	0	18	0	81	0.70
46254648--46254699	18	2.9	17	83	13	61	65	3	0	30	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46254638--46254713	36	2.1	37	87	2	109	68	2	0	28	1.03
46255090--46255122	3	11.0	3	100	0	66	66	0	0	33	0.92
46256043--46256367	106	3.1	106	90	1	499	36	12	12	38	1.80
46257617--46257657	11	3.7	11	90	0	64	24	19	2	53	1.57
46260486--46260609	62	2.0	62	95	0	221	38	19	7	34	1.79
46265136--46265160	11	2.3	11	100	0	50	76	16	0	8	1.02
46266442--46266466	12	2.1	12	100	0	50	40	16	0	44	1.47
46268009--46268151	71	2.0	71	88	0	214	34	23	23	17	1.96
46270869--46270909	18	2.2	19	83	12	50	17	2	4	75	1.08
46272747--46272782	16	2.2	17	95	5	65	69	0	0	30	0.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204