genome.fa.s26.2.7.7.80.10.50.1000.86.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Length:  60343961

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  86  of  204  ( 24404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26661221--26661325	52	2.0	53	83	1	131	33	14	18	34	1.91
26662755--26662796	21	2.0	21	95	0	75	28	30	0	40	1.57
26662755--26662805	21	2.4	21	86	0	57	31	31	0	37	1.58
26663270--26663304	7	4.9	7	89	3	52	14	0	37	48	1.44
26670918--26670963	21	2.1	22	84	4	58	67	2	23	6	1.25
26680839--26680887	3	16.3	3	100	0	98	67	0	0	32	0.91
26682480--26682675	50	3.9	50	73	6	162	24	18	23	33	1.97
26682465--26682705	100	2.4	100	86	2	322	23	19	23	32	1.98
26682967--26683368	45	9.2	45	61	13	156	23	23	23	29	1.99
26682968--26683366	88	4.6	87	85	2	512	23	23	23	29	1.99
26684591--26684638	7	7.0	7	95	4	89	14	14	0	70	1.16
26684591--26684634	13	3.3	13	93	6	79	13	13	0	72	1.12
26685538--26685610	29	2.6	29	86	2	85	10	8	10	69	1.36
26685607--26685670	8	7.6	8	79	19	60	7	3	6	82	0.92
26690812--26690851	3	13.3	3	100	0	80	67	0	0	32	0.91
26700686--26700863	27	6.6	27	79	3	115	28	28	16	26	1.97
26700686--26700863	54	3.3	55	80	10	204	28	28	16	26	1.97
26700707--26700862	82	1.9	81	85	3	215	28	28	16	26	1.97
26709169--26709238	27	2.6	26	95	2	95	31	28	12	27	1.93
26709169--26709266	28	3.5	28	90	2	135	31	28	13	26	1.94
26709713--26709739	12	2.2	12	100	0	54	40	0	7	51	1.30
26717122--26717191	27	2.6	26	95	2	95	31	28	12	27	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26717122--26717219	28	3.5	28	90	2	135	31	28	13	26	1.94
26717666--26717691	12	2.2	12	100	0	52	42	0	7	50	1.31
26722629--26722668	19	2.1	19	100	0	80	42	12	5	40	1.64
26724738--26724858	39	3.1	39	92	4	208	28	8	29	33	1.86
26726178--26726684	69	7.4	69	76	5	346	37	22	21	18	1.94
26726412--26726674	137	1.9	138	79	5	300	37	23	19	19	1.94
26731815--26731847	16	2.1	16	100	0	66	42	18	0	39	1.50
26742575--26742607	17	1.9	17	93	0	57	21	12	9	57	1.62
26745105--26745281	27	6.5	27	83	3	203	27	15	27	29	1.96
26745106--26745261	82	1.9	81	88	3	233	26	15	28	29	1.96
26745102--26745281	82	2.2	81	83	3	227	27	15	27	30	1.96
26750358--26750583	40	5.7	40	87	4	253	26	26	20	25	1.99
26758355--26758532	27	6.6	27	79	3	115	28	28	16	26	1.97
26758355--26758532	54	3.3	55	80	10	204	28	28	16	26	1.97
26758376--26758531	82	1.9	81	85	3	215	28	28	16	26	1.97
26774744--26774775	16	2.1	16	94	5	57	37	0	9	53	1.34
26777890--26778002	25	4.5	25	77	12	106	30	20	23	26	1.98
26777890--26778002	50	2.3	50	87	3	156	30	20	23	26	1.98
26778505--26778538	8	4.2	8	96	0	50	52	17	0	29	1.45
26783866--26784046	90	2.0	90	98	0	353	32	1	28	37	1.67
26783875--26784014	43	3.2	42	63	25	99	31	1	28	38	1.66
26788886--26788948	28	2.4	25	80	14	81	41	14	12	31	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26790526--26790568	21	2.0	21	82	8	52	60	0	11	27	1.31
26791112--26791153	16	2.6	16	85	7	59	52	0	2	45	1.13
26791220--26791277	30	1.9	30	82	6	73	48	12	10	29	1.73
26794369--26794427	30	1.9	31	89	3	93	44	6	20	28	1.77
26794900--26795545	51	12.7	50	77	5	559	29	14	26	29	1.95
26794897--26795545	102	6.4	102	92	1	946	29	14	26	29	1.95
26805663--26805704	20	2.2	19	83	12	50	61	2	19	16	1.44
26810857--26812260	47	29.6	47	95	1	2448	30	29	7	32	1.86
26810857--26812260	523	2.7	521	95	1	2510	30	29	7	32	1.86
26812485--26812617	40	3.3	39	86	7	178	28	26	18	26	1.98
26812485--26812667	80	2.3	80	78	11	196	27	26	19	27	1.99
26823375--26823427	18	2.9	17	78	15	52	50	13	5	30	1.64
26823380--26823422	19	2.2	19	87	4	59	58	9	6	25	1.54
26830847--26830877	16	1.9	16	93	0	53	51	12	16	19	1.76
26832851--26834817	555	3.6	555	90	2	3020	36	15	19	28	1.92
26838817--26838860	21	2.1	21	87	8	63	13	11	34	40	1.81
26842079--26842209	39	3.3	39	89	7	194	27	27	19	25	1.99
26842110--26842252	39	3.7	39	87	8	202	27	27	17	26	1.98
26851911--26852421	47	10.7	47	97	1	898	31	8	29	30	1.87
26852539--26852617	37	2.1	37	90	0	122	24	18	31	25	1.98
26853305--26853524	39	5.6	40	80	7	220	24	25	23	26	2.00
26853297--26853446	79	1.9	79	90	2	239	24	24	24	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26853292--26853446	39	3.9	40	88	2	224	24	25	23	26	2.00
26853305--26853524	79	2.8	79	81	6	216	24	25	23	26	2.00
26853830--26853908	29	2.7	29	82	5	88	29	30	15	25	1.96
26853890--26853992	43	2.4	43	96	0	188	28	35	13	22	1.92
26858536--26858803	136	2.0	137	84	2	360	21	21	26	30	1.98
26865870--26865933	22	3.0	21	86	6	83	29	6	34	29	1.82
26866995--26867059	29	2.2	31	86	10	91	32	9	21	36	1.85
26870040--26870127	33	2.8	32	76	17	94	6	15	2	75	1.12
26870081--26870121	19	2.2	19	86	0	55	9	12	2	75	1.13
26872351--26872397	18	2.5	19	83	12	62	12	8	0	78	0.95
26872351--26872412	10	6.2	10	78	14	65	16	9	0	74	1.07
26872362--26872412	11	4.8	11	83	9	70	15	7	0	76	1.00
26872711--26872774	22	3.0	21	86	6	83	31	4	32	31	1.78
26873836--26873900	29	2.2	31	86	10	91	32	9	21	36	1.85
26878310--26878624	30	10.6	30	76	9	252	26	25	12	35	1.91
26878302--26878631	119	2.8	117	84	5	405	26	25	12	35	1.91
26887875--26887953	41	1.9	41	89	0	122	34	13	30	21	1.92
26904371--26904564	48	4.0	48	81	2	237	22	28	21	27	1.99
26909298--26909434	50	2.7	50	82	0	148	25	20	29	24	1.99
26909682--26909720	12	3.2	12	85	0	51	51	5	23	20	1.67
26914753--26914835	31	2.7	31	77	5	80	46	1	9	42	1.44
26919165--26919210	24	1.9	24	86	8	67	50	17	6	26	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26920724--26921035	154	2.0	154	90	1	491	42	13	8	35	1.74
26929745--26929779	6	5.8	6	89	0	52	68	2	0	28	1.04
26929738--26929777	18	2.2	19	90	4	64	70	5	0	25	1.08
26931773--26931868	47	2.0	47	100	0	192	21	13	18	45	1.84
26934920--26935126	43	4.8	42	78	8	213	24	16	27	30	1.97
26934927--26935141	85	2.5	85	76	13	199	24	16	27	31	1.97
26941706--26941787	27	3.1	26	77	21	73	43	15	12	28	1.83
26941735--26942175	23	19.0	23	72	11	292	40	19	13	26	1.88
26942119--26942187	23	3.0	22	70	19	52	42	15	15	26	1.88
26941746--26942178	93	4.6	93	92	0	713	40	18	13	27	1.89
26944046--26944115	27	2.6	26	93	2	86	31	27	12	28	1.93
26944046--26944143	28	3.5	28	88	2	126	31	27	13	27	1.94
26944588--26944613	12	2.2	12	100	0	52	42	0	7	50	1.31
26951937--26952006	27	2.6	26	95	2	95	31	28	12	27	1.93
26951937--26952034	28	3.5	28	90	2	135	31	28	13	26	1.94
26953956--26954081	28	4.5	28	86	2	155	31	27	11	29	1.91
26953956--26954081	56	2.2	56	87	0	171	31	27	11	29	1.91
26960345--26960426	27	3.1	26	77	21	73	43	15	12	28	1.83
26960374--26960771	47	8.5	47	79	4	403	40	18	13	27	1.88
26960371--26960767	93	4.3	92	83	4	397	41	18	13	26	1.87
26960380--26960771	140	2.8	139	86	3	502	40	18	13	27	1.88
26960712--26960780	23	3.0	22	70	19	52	42	15	15	26	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26961495--26961648	28	5.5	28	92	0	236	31	26	11	30	1.91
26962197--26962229	11	3.1	11	91	4	50	54	24	0	21	1.45
26963740--26963810	13	5.4	12	75	17	61	78	7	2	11	1.04
26963740--26963810	6	10.8	6	76	16	61	78	7	2	11	1.04
26963822--26963848	12	2.2	12	100	0	54	59	0	7	33	1.25
26963984--26964017	17	2.1	17	88	5	52	70	0	8	20	1.13
26964047--26964080	17	1.9	17	88	5	50	70	5	0	23	1.09
26975802--26975844	15	2.8	16	82	6	54	34	13	2	48	1.56
26988110--26988434	159	2.0	159	96	0	605	33	14	20	32	1.93
26996646--26998513	930	2.0	933	90	1	2987	34	16	18	30	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204