genome.fa.s26.2.7.7.80.10.50.1000.155.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Length:  60343961

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  155  of  204  ( 24404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47119552--47119986	176	2.5	176	90	1	667	20	24	28	26	1.99
47119662--47119981	44	7.3	44	62	16	124	19	24	30	25	1.98
47119973--47120525	44	12.5	44	76	7	438	30	25	16	28	1.97
47119971--47120525	133	4.2	133	91	1	898	30	25	16	27	1.97
47126705--47126818	57	2.0	57	94	0	201	16	25	3	54	1.58
47126949--47127040	19	4.8	19	94	0	166	38	16	8	36	1.79
47126926--47127040	38	2.9	38	93	5	185	39	16	7	36	1.78
47128303--47128329	13	2.1	13	100	0	54	44	14	0	40	1.46
47133601--47133635	17	2.2	15	90	10	52	28	0	14	57	1.38
47139175--47139320	37	4.0	37	91	1	233	24	22	15	36	1.93
47139284--47139584	46	6.3	46	90	5	404	28	21	14	35	1.93
47139327--47139584	52	5.2	52	89	6	360	28	22	13	35	1.92
47139284--47139584	98	3.1	98	84	10	407	28	21	14	35	1.93
47150058--47150143	14	7.0	11	77	16	57	26	17	11	44	1.83
47150085--47150124	14	2.9	14	100	0	80	22	15	12	50	1.77
47154363--47154401	7	5.3	7	82	11	51	15	0	2	82	0.79
47154606--47154638	16	2.1	16	94	0	57	78	0	3	18	0.87
47154608--47154668	19	3.2	18	81	9	59	72	0	4	22	1.04
47165244--47165278	7	5.0	7	92	0	61	40	0	31	28	1.57
47166590--47166632	22	2.0	20	86	8	59	25	0	0	74	0.82
47169702--47169744	18	2.4	18	80	0	50	27	6	32	32	1.84
47170901--47171059	84	1.9	83	83	8	207	37	15	7	38	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47173361--47173405	2	23.0	2	95	4	83	51	0	0	48	1.00
47176120--47176148	14	2.0	15	93	6	51	31	0	6	62	1.22
47180050--47180090	9	4.7	9	77	17	50	12	14	0	73	1.11
47181223--47181283	10	5.6	11	75	21	58	22	34	0	42	1.54
47181240--47181295	22	2.5	22	94	2	94	30	30	0	39	1.57
47183141--47183175	18	1.9	18	94	0	61	25	31	8	34	1.86
47183600--47183685	44	1.9	45	88	2	129	40	0	11	47	1.40
47183653--47183720	25	2.7	25	100	0	136	44	0	14	41	1.45
47183736--47184519	29	25.4	29	66	27	263	44	25	0	29	1.57
47183778--47184169	71	5.4	71	72	19	264	45	24	0	30	1.53
47183886--47183928	20	2.2	20	91	4	70	48	23	0	27	1.51
47184014--47184051	19	2.1	17	90	9	58	44	28	0	26	1.54
47183724--47184401	190	3.5	191	85	12	869	44	25	0	29	1.56
47184204--47184241	19	2.1	17	90	9	58	44	28	0	26	1.54
47184301--47184352	19	2.8	19	94	5	90	44	32	0	23	1.54
47183716--47184568	23	35.7	23	71	22	465	45	24	0	29	1.57
47184403--47184493	18	4.7	18	74	16	83	45	24	1	29	1.61
47184412--47184533	18	6.9	18	67	22	71	45	23	0	29	1.58
47184344--47184533	89	2.1	90	85	8	253	45	24	0	30	1.57
47184508--47184571	31	2.1	31	82	5	76	46	26	0	26	1.53
47184574--47184791	116	1.9	116	94	0	382	38	9	10	42	1.71
47186657--47187006	126	2.8	125	87	5	512	32	22	14	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47189977--47190001	12	2.1	12	100	0	50	72	0	8	20	1.10
47190378--47190566	44	4.3	44	67	12	127	26	22	20	31	1.98
47190353--47190655	132	2.3	132	94	0	525	27	22	19	30	1.98
47190749--47191160	128	3.3	124	86	5	361	29	20	19	31	1.97
47190875--47191078	43	4.8	42	73	9	155	28	21	20	29	1.98
47190801--47191180	128	3.0	128	90	1	575	29	20	19	30	1.97
47191195--47191308	44	2.6	45	79	9	119	28	20	18	32	1.96
47191087--47191278	98	2.0	98	84	6	255	30	18	17	33	1.94
47193442--47193505	19	3.3	20	81	14	73	10	21	1	65	1.32
47193516--47193569	18	3.1	17	84	10	56	7	7	0	85	0.75
47193531--47193606	6	12.8	6	84	6	57	11	6	3	77	1.09
47193518--47193569	24	2.2	24	85	0	68	7	7	0	84	0.77
47193531--47193563	13	2.7	12	90	9	57	9	0	0	90	0.44
47193479--47193593	36	3.0	41	75	17	129	10	11	3	74	1.18
47197708--47197732	12	2.1	12	100	0	50	72	0	8	20	1.10
47197987--47198038	22	2.4	22	78	9	54	51	3	7	36	1.49
47202125--47202217	39	2.3	40	83	7	118	52	5	3	38	1.40
47211113--47211176	3	21.3	3	78	0	65	37	1	3	57	1.24
47211300--47211334	18	1.9	18	88	0	52	34	0	0	65	0.93
47216739--47216816	38	2.1	38	100	0	156	52	12	2	32	1.53
47217619--47217684	28	2.2	29	79	15	73	50	3	1	45	1.26
47220187--47220229	18	2.4	18	84	0	59	16	51	6	25	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47223461--47223510	20	2.5	20	80	3	57	44	2	2	52	1.24
47226198--47226226	14	2.0	15	93	6	51	41	3	20	34	1.69
47229671--47229695	13	1.9	13	100	0	50	88	0	12	0	0.53
47238920--47238986	25	2.7	25	73	17	66	29	19	20	29	1.97
47246325--47246358	12	2.7	13	90	4	52	8	14	2	73	1.19
47251395--47251794	67	6.0	67	81	5	434	35	16	24	24	1.95
47251395--47251777	200	1.9	200	80	5	452	35	15	24	24	1.95
47251785--47251857	27	2.7	27	80	0	83	27	12	30	30	1.93
47254308--47254333	13	2.0	13	100	0	52	53	0	0	46	1.00
47255001--47255040	15	2.5	17	80	19	50	52	2	30	15	1.55
47259181--47259233	22	2.3	24	81	18	60	71	3	5	18	1.21
47259622--47259663	3	14.0	3	100	0	84	33	0	0	66	0.92
47263340--47263400	15	4.1	15	78	0	59	29	11	3	55	1.51
47269783--47269831	10	4.9	10	77	7	55	2	12	2	83	0.82
47271654--47271742	44	2.0	43	89	2	133	50	3	8	37	1.51
47272721--47272765	23	2.0	23	100	0	90	17	31	0	51	1.46
47290395--47290438	9	4.9	9	97	0	79	43	11	13	31	1.80
47290524--47290580	30	1.9	29	92	3	96	36	7	0	56	1.27
47297292--47297361	35	2.0	35	100	0	140	51	5	17	25	1.67
47320356--47320777	210	2.0	209	99	0	826	26	21	13	39	1.89
47322114--47322152	18	2.2	18	85	0	51	71	5	10	12	1.28
47323873--47323977	42	2.5	43	84	1	131	26	18	23	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47323873--47323977	43	2.5	41	80	7	111	26	18	23	31	1.97
47330846--47330898	17	3.1	18	83	10	65	20	1	5	71	1.16
47332299--47332357	22	2.7	22	84	7	68	16	20	16	45	1.85
47337444--47337475	15	2.1	15	100	0	64	6	6	12	75	1.19
47338980--47339072	44	2.1	44	97	0	177	37	15	6	40	1.72
47339051--47339094	22	2.0	22	91	4	72	40	13	4	40	1.65
47339826--47339858	13	2.8	12	90	9	50	57	3	0	39	1.14
47345198--47345233	19	1.9	18	88	5	54	86	5	0	8	0.72
47350006--47350237	40	5.8	40	85	3	297	25	28	21	24	1.99
47350006--47350233	120	1.9	120	92	0	384	25	28	21	23	1.99
47349986--47350237	80	3.2	79	88	3	346	26	28	21	23	1.99
47357152--47357193	5	8.4	5	84	10	50	7	14	0	78	0.95
47357152--47357198	15	3.1	15	81	6	51	8	14	0	76	1.01
47357195--47357249	19	3.0	19	81	5	51	45	3	0	50	1.19
47363486--47363557	22	3.3	22	74	0	72	40	11	26	22	1.87
47364473--47364529	30	1.9	29	82	10	71	33	22	15	28	1.95
47367780--47367820	16	2.5	17	88	7	59	24	0	2	73	0.96
47368822--47368896	22	3.1	22	82	14	71	73	0	5	21	1.03
47368830--47368895	4	16.5	4	76	20	59	74	0	4	21	1.00
47368822--47368898	26	3.0	26	76	17	88	72	0	5	22	1.04
47375344--47375379	15	2.5	14	86	8	54	44	8	0	47	1.33
47407751--47407797	22	2.1	22	96	0	85	25	31	10	31	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47414560--47414622	13	4.9	13	77	11	58	36	20	6	36	1.78
47415197--47415245	24	2.1	23	85	11	64	55	0	6	38	1.25
47415532--47415584	27	2.0	27	85	7	72	73	3	0	22	0.99
47416322--47416352	15	2.1	15	93	0	53	48	0	0	51	1.00
47416593--47416628	2	18.0	2	100	0	72	50	0	0	50	1.00
47416678--47416720	14	2.8	16	82	10	54	34	6	9	48	1.62
47418478--47418577	9	11.1	9	80	4	103	15	6	40	39	1.71
47418474--47418567	36	2.6	36	90	6	138	15	5	39	39	1.71
47420897--47420944	13	3.6	14	83	16	50	25	2	0	72	0.95
47420897--47420944	19	2.6	19	86	3	62	25	2	0	72	0.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204