genome.fa.s26.2.7.7.80.10.50.1000.148.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Length:  60343961

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  148  of  204  ( 24404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45078250--45078323	35	2.1	35	87	0	103	24	6	20	48	1.73
45082032--45082089	30	1.9	30	85	3	80	25	6	17	50	1.71
45087129--45087200	21	3.5	21	75	9	85	51	1	1	45	1.18
45087302--45087362	32	1.9	32	89	0	95	50	1	8	39	1.42
45096089--45096129	21	2.0	21	85	4	57	31	9	17	41	1.82
45098269--45098333	3	21.0	3	72	12	51	60	1	9	29	1.37
45098415--45098561	79	1.9	78	81	7	181	59	3	7	29	1.41
45099824--45100021	44	4.5	44	77	6	161	28	21	20	29	1.98
45099870--45100056	88	2.1	88	79	5	200	27	20	20	31	1.98
45100129--45100259	46	2.8	47	74	4	122	31	22	13	32	1.93
45100178--45100747	44	12.8	43	73	8	311	29	23	16	30	1.96
45100178--45100749	89	6.4	89	74	8	380	29	23	16	30	1.96
45100225--45100752	133	4.0	131	76	6	440	29	23	16	30	1.97
45112500--45112655	50	3.1	50	84	0	204	22	30	21	25	1.99
45112616--45112692	37	2.1	37	92	0	127	22	29	20	27	1.98
45112653--45112783	48	2.6	48	83	9	145	23	30	20	25	1.99
45115180--45115244	3	21.0	3	72	12	51	61	1	7	29	1.33
45115326--45115472	79	1.9	78	81	7	181	59	3	7	29	1.41
45123674--45123740	33	2.0	33	94	0	116	47	2	26	22	1.65
45124190--45124250	28	2.2	28	100	0	122	27	13	26	32	1.93
45128194--45128392	103	1.9	103	91	0	326	31	9	12	46	1.74
45140104--45140156	25	2.1	27	89	10	85	56	24	0	18	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45144116--45144424	157	2.0	157	93	0	530	47	4	3	44	1.41
45144554--45144621	16	4.2	16	92	0	109	38	32	1	27	1.66
45158243--45158646	46	8.6	46	81	13	302	34	14	22	28	1.93
45158243--45158592	46	7.2	48	86	8	437	34	14	22	29	1.93
45158243--45158592	98	3.6	97	85	9	494	34	14	22	29	1.93
45161229--45161312	43	1.9	45	83	9	111	45	1	2	51	1.22
45161468--45161521	16	3.4	16	82	10	65	27	22	3	46	1.69
45161476--45161529	16	3.4	16	85	10	74	25	24	1	48	1.61
45179175--45179219	22	2.0	23	82	4	56	24	31	26	17	1.97
45181171--45181234	21	3.0	22	73	17	71	37	25	17	20	1.93
45181332--45181375	6	7.3	6	80	10	54	31	18	2	47	1.61
45182349--45182386	14	2.4	17	87	12	55	52	0	0	47	1.00
45182366--45182404	12	3.4	11	80	13	51	46	2	0	51	1.14
45185053--45185195	51	2.8	51	82	6	191	33	27	16	22	1.95
45185049--45185225	51	3.5	49	75	9	151	33	27	14	24	1.94
45188814--45189134	25	12.8	25	70	3	171	35	15	27	21	1.94
45188839--45189078	100	2.4	100	92	0	390	37	14	26	21	1.92
45188818--45189078	50	5.2	50	85	0	344	36	15	26	21	1.93
45190672--45190729	3	19.0	3	78	3	62	29	5	3	62	1.33
45190796--45190825	14	2.1	14	93	0	51	46	13	0	40	1.43
45191501--45191644	74	1.9	75	85	2	202	25	18	16	39	1.91
45197456--45197495	19	2.1	19	86	9	55	52	0	15	32	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45197908--45198020	37	2.9	39	83	11	151	25	16	22	35	1.95
45198771--45198990	110	2.0	110	90	0	341	25	20	33	20	1.97
45203510--45203548	17	2.4	17	91	4	62	51	0	0	48	1.00
45203989--45204023	12	2.8	13	87	12	56	71	0	0	28	0.86
45204466--45204512	19	2.4	21	83	13	57	48	10	6	34	1.63
45207867--45207908	19	2.3	18	84	8	50	35	11	14	38	1.83
45208346--45208721	132	2.9	132	85	5	502	25	25	19	29	1.99
45208715--45208984	89	3.0	89	85	2	364	24	24	23	28	2.00
45209061--45209180	44	2.7	44	85	0	150	29	23	20	27	1.98
45209513--45209786	44	6.2	43	72	11	171	28	21	17	32	1.96
45209626--45209744	45	2.6	45	79	10	127	26	26	17	29	1.98
45219131--45219169	17	2.4	17	91	4	62	51	0	0	48	1.00
45220087--45220133	19	2.4	21	83	13	57	48	10	6	34	1.63
45224218--45224256	14	2.8	14	84	0	51	30	20	10	38	1.86
45227818--45228213	73	5.4	73	84	0	513	29	18	25	26	1.98
45227818--45228213	219	1.8	219	88	0	612	29	18	25	26	1.98
45228110--45228320	114	1.9	114	84	0	287	27	18	26	27	1.98
45228037--45228436	187	2.1	187	89	0	602	27	19	26	27	1.99
45228224--45228698	73	6.4	73	72	10	372	26	19	27	26	1.99
45228370--45228477	41	2.6	41	94	2	182	21	19	29	29	1.97
45228183--45228605	228	1.9	228	88	1	641	26	19	27	26	1.99
45228926--45228973	22	2.2	21	81	3	60	20	0	31	47	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45228934--45229055	21	5.9	21	69	8	61	18	2	35	43	1.64
45229012--45229055	7	6.3	7	82	10	54	15	0	36	47	1.46
45229012--45229055	13	3.2	13	83	9	52	15	0	36	47	1.46
45234124--45234277	43	3.6	42	86	7	181	21	15	28	34	1.94
45234157--45234277	43	2.8	42	92	3	197	21	18	28	31	1.97
45234977--45235096	61	2.0	60	86	1	168	26	24	16	32	1.96
45238066--45238110	21	2.1	21	84	15	58	64	15	15	4	1.44
45238916--45238977	28	2.2	27	78	16	63	40	1	4	53	1.32
45241035--45241096	24	2.5	24	92	2	97	46	17	14	20	1.83
45245764--45245812	11	3.9	12	78	17	55	46	0	0	53	1.00
45245774--45245812	13	2.9	14	81	18	55	46	0	0	53	1.00
45249205--45249313	25	4.4	25	76	10	107	30	22	25	21	1.99
45249197--45249313	50	2.3	50	81	5	130	30	22	24	22	1.99
45250329--45250367	19	1.9	19	90	10	60	69	17	0	12	1.19
45251571--45251837	26	10.2	26	72	12	165	31	6	3	58	1.42
45251832--45251936	26	4.1	26	78	11	92	22	4	9	62	1.44
45251832--45251936	52	2.1	50	80	10	115	22	4	9	62	1.44
45252309--45252353	9	4.9	9	89	5	63	22	22	26	28	1.99
45252305--45252353	18	2.6	19	90	3	73	24	20	26	28	1.99
45254534--45254570	17	2.1	18	85	14	51	32	0	13	54	1.40
45255141--45255197	29	1.9	29	85	3	78	19	40	1	38	1.62
45255222--45255281	30	2.0	29	81	9	68	26	30	0	43	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45255301--45255360	30	2.0	31	86	3	86	20	36	0	43	1.52
45256100--45256130	15	2.1	15	93	0	53	19	9	19	51	1.74
45271281--45271349	36	1.9	36	90	0	111	26	2	39	31	1.71
45271257--45271333	21	3.6	22	74	8	61	25	2	38	32	1.70
45271522--45271570	14	3.4	14	83	5	62	26	0	34	38	1.57
45271167--45271739	287	2.0	290	87	5	836	28	2	26	41	1.70
45293977--45294039	3	22.0	3	75	15	62	66	0	28	4	1.12
45293977--45294045	17	4.0	17	77	9	77	66	0	27	5	1.14
45293977--45294031	20	2.8	20	81	10	60	67	0	29	3	1.08
45311197--45311227	16	1.9	16	93	0	53	38	3	25	32	1.72
45314426--45314594	84	2.0	84	95	0	302	31	28	15	24	1.95
45316523--45316578	27	2.1	27	96	0	103	39	23	7	30	1.81
45317534--45317575	10	4.2	10	81	9	50	40	0	2	57	1.12
45317534--45317575	20	2.1	20	86	8	59	40	0	2	57	1.12
45317529--45317580	14	3.4	14	72	23	50	40	0	1	57	1.10
45318179--45318545	184	2.0	183	97	0	689	35	13	15	35	1.87
45320893--45321321	28	15.1	28	76	5	306	30	20	20	29	1.97
45320987--45321223	118	2.0	118	83	0	294	31	20	18	30	1.96
45320899--45321319	84	4.9	84	74	6	344	30	19	20	29	1.97
45321337--45321379	20	2.2	20	95	0	77	30	11	20	37	1.89
45321357--45321533	29	6.1	29	87	0	264	32	22	16	27	1.96
45326638--45326825	68	2.8	69	87	1	245	28	22	14	34	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45333003--45333049	23	1.9	24	87	12	69	31	0	8	59	1.27
45334654--45334693	19	2.1	19	86	9	55	60	32	0	7	1.25
45335054--45335083	12	2.5	12	94	0	51	10	6	6	76	1.15
45336111--45336135	4	6.2	4	100	0	50	28	0	0	72	0.86
45337709--45337760	23	2.2	24	82	3	61	71	3	1	23	1.13
45338699--45338744	20	2.3	20	84	0	56	45	4	13	36	1.63
45340261--45340286	13	2.0	13	100	0	52	61	30	0	7	1.24
45348518--45348572	24	2.2	24	84	9	67	65	0	1	32	1.03
45352500--45352531	3	10.7	3	100	0	64	68	0	0	31	0.90
45354165--45354207	19	2.3	18	84	4	50	20	0	6	72	1.08

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204