genome.fa.s26.2.7.7.80.10.50.1000.168.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Length:  60343961

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  168  of  204  ( 24404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50399549--50399735	44	4.2	45	66	14	111	29	19	22	27	1.98
50399190--50399795	132	4.6	131	94	1	1043	29	18	23	28	1.98
50399797--50400292	44	11.6	44	72	11	300	27	20	24	27	1.99
50399797--50400114	127	2.5	127	90	2	478	27	20	24	27	1.99
50399913--50400383	217	2.2	216	90	1	721	28	19	23	27	1.99
50399913--50400372	44	10.6	43	73	13	268	28	20	23	27	1.99
50400257--50400369	45	2.5	45	82	12	144	30	21	21	26	1.98
50399797--50400405	173	3.5	173	75	11	421	28	20	23	27	1.99
50402071--50402095	9	2.8	9	100	0	50	24	0	8	68	1.16
50402371--50402567	98	2.0	98	97	0	376	28	9	23	38	1.85
50408930--50408976	24	1.9	24	86	4	67	78	4	12	4	1.04
50418545--50418691	43	3.5	43	81	9	151	29	25	14	29	1.95
50422445--50422476	17	1.9	16	93	6	55	25	18	0	56	1.42
50422445--50422509	20	3.4	19	76	14	62	24	16	0	58	1.38
50422457--50422513	21	2.8	21	71	23	59	24	14	0	61	1.33
50422464--50422548	38	2.4	36	81	14	97	20	10	2	67	1.32
50422570--50422656	5	16.4	5	74	19	61	29	19	0	50	1.48
50422572--50422610	19	2.1	19	90	0	60	28	23	0	48	1.51
50422597--50422657	23	2.7	22	80	12	70	32	18	0	49	1.48
50422592--50422656	28	2.3	28	89	5	96	30	18	0	50	1.47
50422591--50422656	11	6.0	11	74	19	50	30	18	0	51	1.46
50422985--50423051	29	2.3	29	81	0	80	17	32	23	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50423078--50423197	5	22.6	5	77	9	98	17	21	1	59	1.46
50423068--50423197	16	8.2	15	78	8	82	16	20	1	61	1.42
50423097--50423191	22	4.5	22	77	16	103	17	24	2	55	1.53
50423082--50423181	38	2.7	38	93	4	170	18	23	2	57	1.51
50423194--50423330	21	6.2	21	71	18	100	24	12	0	63	1.28
50423211--50423430	26	9.0	26	66	21	129	22	14	0	62	1.36
50423187--50423387	47	4.3	46	87	5	262	22	12	0	63	1.35
50423187--50423387	93	2.2	92	89	2	296	22	12	0	63	1.35
50423310--50423414	27	4.2	26	65	16	60	21	12	1	63	1.38
50423386--50423434	21	2.3	23	79	13	59	22	14	0	63	1.30
50423296--50423437	74	1.9	74	85	2	196	20	14	1	64	1.36
50423543--50423583	15	2.8	16	88	7	52	24	14	0	60	1.34
50423555--50423585	15	2.1	15	100	0	62	19	12	0	67	1.22
50423869--50423940	5	13.6	5	73	13	56	16	23	2	56	1.53
50423869--50423940	12	6.7	11	80	13	80	16	23	2	56	1.53
50423883--50423940	6	10.3	6	73	12	52	17	24	3	55	1.57
50423883--50423940	23	2.6	23	86	8	52	17	24	3	55	1.57
50423931--50424139	26	8.4	27	65	24	88	22	12	0	64	1.33
50423949--50423983	16	2.2	16	89	0	52	14	11	0	74	1.08
50423933--50424085	22	6.7	21	70	20	85	22	12	0	64	1.27
50423979--50424159	47	3.7	48	85	10	242	22	12	1	64	1.34
50424074--50424132	29	2.0	28	87	9	82	22	11	1	64	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50424120--50424159	20	2.0	20	85	9	55	17	12	2	67	1.33
50427600--50427660	3	20.0	3	93	3	104	63	0	1	34	1.04
50428316--50428362	19	2.6	18	76	6	51	76	0	14	8	1.01
50430042--50430430	97	4.0	97	76	12	329	36	17	16	29	1.92
50430057--50430418	201	1.8	192	84	9	489	36	17	15	29	1.91
50433570--50433632	30	2.1	30	93	0	108	25	3	14	57	1.52
50433742--50433789	23	2.0	25	84	8	64	62	0	0	37	0.95
50439971--50440305	50	6.7	51	73	9	221	33	23	18	24	1.97
50439901--50440304	100	4.0	100	87	6	518	32	23	19	24	1.97
50439920--50440300	50	7.6	50	71	11	187	33	23	18	25	1.97
50447021--50447053	6	5.7	6	92	3	50	72	9	0	18	1.10
50447033--50447073	19	2.2	19	86	0	55	80	4	2	12	0.97
50447016--50447091	24	3.1	24	72	10	73	76	7	3	11	1.14
50447106--50447137	13	2.5	13	100	0	64	68	0	15	15	1.21
50447102--50447135	7	5.0	7	92	7	61	70	0	14	14	1.17
50448566--50448900	50	6.7	51	74	9	230	33	23	18	24	1.97
50448496--50448899	100	4.0	100	87	6	527	32	23	19	24	1.98
50448515--50448895	50	7.6	50	72	11	196	32	23	18	25	1.97
50455370--50455400	16	1.9	16	93	0	53	64	6	0	29	1.18
50458095--50458150	20	2.8	20	86	0	76	41	8	7	42	1.63
50458350--50458463	20	5.7	20	71	8	97	40	8	14	36	1.76
50458350--50458463	60	1.9	60	83	3	149	40	8	14	36	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50458572--50458665	20	4.6	21	74	12	56	35	5	17	42	1.71
50458870--50458972	20	5.2	20	69	13	61	41	5	8	43	1.59
50458870--50458975	40	2.7	40	82	5	108	41	5	8	44	1.58
50464085--50464119	12	2.7	13	91	8	54	0	14	0	85	0.59
50465143--50465185	17	2.5	17	80	0	59	76	2	6	13	1.08
50470390--50470434	24	2.0	23	86	8	65	51	2	0	46	1.13
50474732--50474778	25	1.9	24	91	4	76	31	6	17	44	1.73
50477057--50477091	16	2.1	17	94	5	63	20	5	5	68	1.31
50477414--50477457	23	1.9	23	81	9	54	18	9	22	50	1.75
50482818--50482860	19	2.2	20	84	12	54	55	6	6	30	1.53
50482817--50482861	20	2.2	21	77	18	51	57	6	6	28	1.50
50492538--50492567	12	2.5	12	94	0	51	63	0	0	36	0.95
50496774--50496850	27	2.8	27	84	2	100	53	6	2	37	1.41
50496774--50496870	28	3.5	28	80	4	99	50	7	4	38	1.49
50499887--50499919	12	2.8	12	86	4	50	30	3	0	66	1.06
50501344--50502697	674	2.0	674	97	0	2537	31	16	20	31	1.95
50502680--50502732	24	2.2	25	86	3	72	26	22	7	43	1.80
50505469--50505536	9	7.8	9	79	12	61	82	13	2	1	0.86
50505467--50505535	26	2.6	26	86	13	88	84	11	2	1	0.81
50505467--50505535	28	2.5	28	88	4	97	84	11	2	1	0.81
50505464--50505535	17	4.2	17	78	5	74	84	11	2	1	0.78
50505965--50506028	11	6.1	10	77	12	58	81	3	15	0	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50505966--50506014	13	4.2	13	78	19	54	83	2	14	0	0.73
50505964--50506014	5	10.6	5	80	16	63	82	1	15	0	0.76
50505978--50506023	23	1.9	25	91	8	78	80	2	17	0	0.81
50506361--50506556	108	1.8	108	84	2	268	26	16	9	47	1.77
50507408--50508049	50	12.9	50	70	4	436	31	22	21	25	1.98
50507385--50508049	100	6.7	100	83	0	821	31	22	21	24	1.98
50507396--50508049	200	3.3	200	90	0	1031	31	22	21	24	1.98
50508114--50508686	40	13.8	40	68	13	210	32	22	19	25	1.98
50508060--50508695	127	5.0	127	85	5	835	33	22	19	24	1.97
50508068--50508695	250	2.5	250	88	2	913	32	22	19	25	1.97
50510375--50510405	12	2.7	11	90	9	53	32	3	0	64	1.09
50521404--50521468	3	21.0	3	72	12	51	29	7	1	61	1.33
50523903--50523946	21	2.2	20	87	4	61	38	0	27	34	1.57
50525719--50525802	25	3.4	25	88	4	118	30	20	26	22	1.98
50525734--50525828	48	1.9	51	83	10	126	34	18	25	21	1.96
50528803--50528842	11	3.7	11	86	3	55	72	0	27	0	0.85
50533137--50533232	42	2.3	42	92	0	156	37	11	26	25	1.89
50535292--50535316	7	3.6	7	100	0	50	28	0	12	60	1.32
50535968--50536004	18	2.1	18	94	0	65	24	29	8	37	1.84
50536262--50536310	21	2.3	21	79	6	55	32	36	28	2	1.69
50536431--50536554	25	5.1	25	72	14	125	42	0	16	41	1.48
50536599--50536783	23	7.6	24	81	12	209	50	20	3	25	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50536611--50536837	23	10.0	23	76	15	199	49	22	3	24	1.65
50536621--50536837	46	4.8	46	78	13	250	49	23	2	24	1.63
50536599--50536791	97	2.0	97	95	0	350	49	21	3	24	1.65
50536621--50536783	74	2.3	74	86	5	228	50	21	3	25	1.63
50536765--50536798	16	2.1	16	88	0	50	50	23	0	26	1.50
50536719--50536837	62	1.9	62	94	0	211	48	24	1	25	1.60
50536805--50536868	29	2.2	29	83	10	78	43	35	0	20	1.52
50536823--50536871	16	3.2	16	73	26	61	42	36	0	20	1.52
50536871--50537088	115	1.9	115	90	4	350	40	10	7	41	1.67
50538227--50539434	604	2.0	604	98	0	2344	27	24	20	26	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204