genome.fa.s26.2.7.7.80.10.50.1000.125.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Length:  60343961

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  125  of  204  ( 24404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38770022--38770058	19	1.9	19	94	0	65	59	2	10	27	1.44
38774298--38774392	46	2.1	46	93	0	163	27	28	11	32	1.91
38775705--38775874	9	20.2	9	74	16	150	35	0	17	46	1.53
38775718--38775854	16	8.3	16	78	15	145	32	0	17	49	1.47
38775710--38775878	25	7.1	23	76	16	118	34	0	17	47	1.47
38775718--38775840	41	3.0	41	86	4	178	33	0	17	48	1.48
38775953--38776045	34	2.8	32	75	14	89	54	2	5	37	1.35
38776025--38776054	13	2.4	13	94	5	53	60	0	0	40	0.97
38776037--38776090	22	2.6	20	80	11	72	57	0	1	40	1.09
38776039--38776084	22	2.1	22	95	0	83	63	0	0	36	0.95
38776359--38776400	22	1.9	22	95	0	75	38	0	14	47	1.44
38777299--38777338	12	3.3	12	85	0	53	55	12	7	25	1.63
38777299--38777346	24	2.0	24	83	4	60	52	12	8	27	1.67
38777387--38777412	12	2.2	12	100	0	52	57	11	7	23	1.59
38778740--38778802	22	3.0	21	79	4	72	36	47	0	15	1.46
38778768--38778798	7	4.4	7	95	0	53	35	61	0	3	1.12
38778746--38778802	7	8.0	7	80	3	51	35	50	0	14	1.42
38778835--38778867	14	2.3	15	94	5	59	36	33	0	30	1.58
38779246--38779565	41	7.8	41	84	2	347	30	28	23	18	1.97
38779625--38779734	40	2.8	40	74	10	100	18	22	23	35	1.96
38784905--38784956	27	1.9	27	88	0	77	25	15	17	42	1.88
38784914--38785375	27	17.4	27	81	4	465	20	15	20	43	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38785178--38785268	46	2.0	46	86	4	130	20	16	15	47	1.83
38785151--38785294	73	2.0	73	84	2	191	20	15	17	46	1.84
38785111--38785348	127	1.9	126	93	2	415	20	15	19	44	1.87
38785132--38785326	100	2.0	100	84	6	261	21	15	17	44	1.86
38785224--38785378	80	1.9	80	88	5	233	18	15	20	45	1.85
38785232--38785375	53	2.7	54	86	3	193	18	15	20	45	1.86
38789089--38789181	13	7.4	12	74	22	52	76	4	2	17	1.05
38789137--38789175	6	6.5	6	82	11	53	74	0	0	25	0.82
38789133--38789175	15	2.9	14	76	10	50	76	0	0	23	0.78
38789147--38789187	17	2.4	17	91	0	64	70	2	2	24	1.11
38790553--38790665	19	5.8	19	82	4	145	37	9	15	37	1.81
38790554--38790665	59	1.9	59	86	0	161	37	9	15	37	1.80
38791847--38792043	98	2.0	98	94	0	349	28	10	23	37	1.88
38793695--38793785	32	2.8	32	96	0	164	38	14	17	29	1.89
38801026--38801195	27	6.3	27	88	0	214	44	21	18	15	1.86
38804264--38804288	13	1.9	13	100	0	50	56	8	0	36	1.29
38807271--38807535	33	8.0	33	78	7	243	30	18	20	30	1.96
38807271--38807535	99	2.7	99	80	8	297	30	18	20	30	1.96
38811490--38811546	29	2.0	29	96	0	105	22	28	8	40	1.84
38813282--38813310	5	5.8	5	100	0	58	20	58	0	20	1.39
38815700--38815843	27	5.3	26	83	9	155	38	20	19	21	1.93
38815700--38815842	54	2.6	54	82	6	173	39	20	19	20	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38822146--38822594	27	16.7	27	80	8	400	44	20	17	18	1.87
38822146--38822594	81	5.6	80	80	7	453	44	20	17	18	1.87
38822794--38822869	26	2.8	27	76	6	73	17	22	22	38	1.93
38827679--38827732	20	2.7	20	85	5	65	18	18	3	59	1.52
38828462--38828730	138	2.0	137	82	6	330	36	27	16	19	1.93
38829098--38829137	20	2.2	19	86	13	57	37	15	5	42	1.68
38831323--38831390	30	2.2	31	84	2	84	26	19	7	47	1.75
38833864--38833923	27	2.3	27	88	2	86	36	16	23	23	1.94
38833864--38833946	27	3.1	27	81	6	80	36	15	21	26	1.94
38833996--38834057	24	2.6	24	86	0	79	22	8	20	48	1.76
38834191--38834293	26	4.0	26	84	2	127	15	22	24	37	1.93
38840311--38840440	67	1.9	67	88	0	197	20	34	24	20	1.96
38840310--38840459	67	2.2	67	82	2	185	19	36	24	20	1.95
38842011--38842062	21	2.5	20	75	3	50	50	5	3	40	1.45
38843605--38843646	20	2.2	19	87	12	59	16	21	4	57	1.58
38845160--38845201	20	2.2	19	87	12	59	16	21	4	57	1.58
38847212--38847395	39	4.6	39	81	5	201	25	27	22	25	2.00
38847212--38847393	79	2.3	80	81	7	210	24	28	21	25	1.99
38855154--38855338	79	2.3	82	83	7	229	24	27	22	24	2.00
38855135--38855338	40	5.1	40	81	8	229	24	27	22	25	2.00
38856853--38856945	46	2.0	47	97	2	179	25	26	19	27	1.99
38857894--38857931	20	1.9	20	88	0	58	15	21	7	55	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38859543--38859723	27	6.7	26	86	5	209	41	23	15	19	1.89
38859543--38860043	54	9.1	54	72	11	257	42	21	16	19	1.89
38859710--38859737	14	2.0	14	100	0	56	35	42	7	14	1.73
38859684--38859761	41	1.9	41	89	0	120	39	29	16	14	1.88
38859657--38859790	67	2.0	68	86	1	189	40	26	14	17	1.89
38859724--38860043	53	6.0	53	84	4	347	42	20	17	19	1.89
38859630--38859812	94	1.9	95	86	3	262	42	24	14	18	1.88
38859724--38860043	27	12.0	27	81	3	324	42	20	17	19	1.89
38859725--38860044	80	4.0	78	81	4	345	42	20	17	19	1.89
38862245--38862286	12	3.5	12	75	12	50	33	0	42	23	1.55
38862245--38862291	24	1.9	24	91	4	76	34	0	38	27	1.57
38862901--38863363	27	17.2	27	78	3	394	43	21	15	19	1.87
38869613--38869654	20	2.2	19	87	12	59	16	21	4	57	1.58
38875305--38875388	16	5.2	16	75	5	80	47	10	17	23	1.79
38875310--38875372	33	1.9	33	83	0	81	47	9	19	23	1.78
38875306--38875406	49	2.0	49	87	9	143	47	9	18	23	1.79
38877288--38877316	14	2.0	15	93	6	51	10	13	0	75	1.04
38891522--38891627	37	2.9	37	94	0	176	26	31	17	24	1.97
38891837--38892511	47	14.1	47	89	4	990	25	30	13	30	1.93
38891837--38892489	192	3.4	192	94	2	1062	25	30	13	30	1.94
38895626--38895683	18	3.3	18	79	13	57	37	10	15	36	1.82
38901162--38901230	34	2.0	34	100	0	138	42	11	2	43	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38903655--38903684	15	1.9	16	93	6	53	3	10	0	86	0.67
38908839--38908867	14	2.1	14	100	0	58	72	0	0	27	0.85
38911799--38911832	17	2.0	17	94	0	59	52	8	11	26	1.67
38922511--38922554	12	3.8	12	81	6	63	38	15	4	40	1.68
38922665--38922712	24	1.9	26	87	8	73	27	18	6	47	1.72
38923504--38923533	14	2.1	15	93	6	53	23	10	0	66	1.21
38926369--38926607	27	8.9	27	87	0	302	20	17	20	41	1.90
38933257--38934024	389	2.0	389	89	0	1187	27	12	20	39	1.88
38936668--38936754	25	3.5	24	77	12	86	32	20	25	21	1.98
38959397--38959444	25	1.9	25	91	0	78	16	22	22	37	1.94
38959405--38959452	25	1.9	25	83	8	62	18	27	18	35	1.95
38968070--38968116	19	2.4	20	82	3	60	65	6	2	25	1.27
38968327--38968437	19	5.7	18	68	20	64	32	3	4	59	1.35
38968327--38968437	18	5.7	19	73	11	91	32	3	4	59	1.35
38976016--38976077	28	2.2	28	86	8	90	37	4	0	58	1.20
38977024--38977066	15	2.7	16	82	10	52	67	4	0	27	1.10
38978854--38978912	23	2.6	23	97	0	109	23	27	6	42	1.79
38979121--38979163	9	4.8	9	85	0	59	37	27	9	25	1.87
38979162--38979236	37	2.0	37	92	0	123	45	13	4	37	1.62
38979365--38979442	38	2.0	39	90	2	122	17	3	25	52	1.62
38979385--38979499	52	2.2	52	93	4	198	18	1	33	46	1.59
38979475--38979529	13	3.9	13	80	17	65	14	0	45	40	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38979475--38979538	30	2.1	31	94	2	112	17	0	42	40	1.49
38980783--38981156	38	10.2	38	74	7	235	38	14	20	26	1.91
38980819--38981196	35	10.4	35	75	12	232	38	14	19	26	1.91
38980819--38981201	73	5.3	72	73	10	273	38	14	19	27	1.91
38987106--38987152	24	2.0	24	86	0	67	14	21	6	57	1.60
38987120--38987261	40	3.5	40	86	5	180	22	23	4	49	1.69
38990304--38990356	24	2.2	24	86	0	70	16	28	37	16	1.91
38992241--38992269	11	2.6	11	100	0	58	17	0	6	75	1.01
38992486--38992591	52	2.0	52	100	0	212	54	9	9	26	1.63
38995051--38995112	25	2.5	25	81	5	63	27	22	19	30	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204