genome.fa.s26.2.7.7.80.10.50.1000.157.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Length:  60343961

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  157  of  204  ( 24404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47638869--47638909	12	3.8	11	84	15	50	51	12	26	9	1.70
47641336--47641435	40	2.5	40	91	0	164	44	31	16	9	1.78
47642074--47642117	15	2.9	15	100	0	88	52	20	0	27	1.47
47644849--47645003	49	3.3	46	67	24	119	47	13	9	30	1.74
47644876--47645017	46	3.1	46	64	25	111	47	13	8	30	1.72
47644799--47645077	90	3.1	89	90	2	423	46	13	8	31	1.74
47646659--47646713	18	2.9	19	84	10	60	56	3	1	38	1.28
47646672--47646713	20	2.1	20	86	8	59	54	0	2	42	1.13
47648941--47649105	87	1.9	86	87	3	242	24	16	22	35	1.95
47650843--47650904	27	2.3	27	82	0	79	27	22	12	37	1.91
47651961--47651998	18	2.1	18	85	9	51	36	2	0	60	1.11
47659965--47660190	113	2.0	113	96	0	416	31	10	12	45	1.76
47661404--47661455	21	2.5	21	77	0	59	30	30	9	28	1.89
47666433--47666531	52	2.0	52	80	11	118	45	6	2	46	1.39
47666488--47666521	17	2.0	17	94	0	59	44	5	0	50	1.26
47666493--47666540	17	3.0	16	79	17	55	45	6	2	45	1.40
47666537--47666715	54	3.1	54	65	22	137	41	2	7	49	1.43
47666533--47666720	61	3.1	61	68	14	190	41	2	6	49	1.41
47666581--47666615	18	2.0	17	88	5	52	40	0	0	60	0.97
47666530--47666752	120	1.9	120	97	0	419	42	2	6	49	1.40
47666701--47666735	18	2.0	17	88	5	52	45	0	0	54	0.99
47666564--47666749	54	3.2	54	66	21	142	43	1	4	50	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47666689--47666960	144	1.9	147	94	3	487	47	2	3	46	1.34
47666845--47666879	18	2.0	17	88	5	52	45	0	0	54	0.99
47679016--47679058	22	2.0	22	100	0	86	37	9	2	51	1.47
47679116--47679196	27	3.0	28	87	5	114	30	22	28	18	1.97
47679271--47679340	19	3.7	19	82	3	97	37	10	0	52	1.35
47679276--47679346	37	1.9	37	97	0	133	40	9	0	49	1.36
47679603--47679673	37	1.9	37	97	0	133	49	0	9	40	1.36
47679609--47679677	19	3.7	19	82	5	97	52	0	10	37	1.36
47679902--47679970	19	3.7	19	80	5	88	53	0	8	37	1.32
47679896--47679966	37	1.9	37	97	0	133	50	0	9	39	1.36
47679896--47679954	18	3.2	18	80	4	73	50	0	10	38	1.36
47679939--47679980	19	2.2	19	86	4	57	59	0	4	35	1.19
47680046--47680096	27	1.9	27	96	4	95	21	31	21	25	1.98
47680161--47680208	24	2.0	24	95	0	87	52	0	8	39	1.32
47680278--47680311	18	2.0	17	88	11	52	41	0	2	55	1.15
47680287--47680475	59	3.2	58	72	14	195	41	1	4	52	1.30
47680260--47680497	120	2.0	119	97	0	449	42	2	5	50	1.36
47680421--47680527	26	3.9	27	68	14	94	42	0	2	54	1.21
47680397--47680513	18	7.0	17	66	26	54	39	0	3	56	1.22
47680828--47680878	24	2.0	26	85	14	72	54	0	13	31	1.39
47691383--47691451	29	2.3	30	73	7	70	55	5	2	36	1.39
47691628--47691680	21	2.5	21	81	0	70	39	37	1	20	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47696785--47697593	45	18.0	45	85	2	1088	30	17	23	28	1.97
47697562--47697767	89	2.3	88	82	0	250	28	22	23	25	1.99
47697619--47697813	88	2.2	89	81	4	225	27	20	26	26	1.99
47698134--47698342	44	4.7	45	73	3	154	32	20	21	26	1.98
47698134--47698374	133	1.8	134	89	0	385	32	19	19	27	1.96
47698293--47698431	45	3.1	43	75	10	120	34	13	21	30	1.92
47699167--47699200	14	2.4	14	90	9	52	67	5	17	8	1.37
47700306--47700346	18	2.2	20	82	8	50	14	2	17	65	1.37
47701353--47701407	11	5.0	11	76	20	53	40	0	0	60	0.97
47701353--47701390	20	2.0	20	94	5	69	39	0	0	60	0.97
47701383--47701423	15	2.9	14	86	10	57	43	0	0	56	0.99
47701347--47701419	29	2.4	31	76	19	82	41	1	0	57	1.07
47701398--47701423	13	2.0	13	100	0	52	46	0	0	53	1.00
47701730--47701793	30	2.1	29	83	11	76	34	18	1	45	1.59
47701730--47701793	31	2.1	30	82	5	76	34	18	1	45	1.59
47705065--47705198	54	2.5	54	93	2	225	26	20	35	17	1.95
47718262--47718293	3	10.7	3	100	0	64	0	31	0	68	0.90
47721166--47721214	24	2.0	24	84	0	62	12	6	14	67	1.40
47730311--47730395	42	2.0	42	100	0	170	24	23	32	18	1.97
47730689--47730733	20	2.2	20	88	0	63	26	13	15	44	1.83
47746756--47746810	21	2.6	21	91	0	92	21	9	40	29	1.84
47750802--47750840	5	7.4	5	91	8	60	58	0	0	41	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47750803--47750847	16	2.5	19	79	20	60	60	0	0	40	0.97
47753025--47753120	41	2.3	41	92	0	156	27	20	29	22	1.99
47758324--47758404	41	2.0	41	100	0	162	25	22	14	37	1.93
47760749--47760860	41	2.7	41	88	0	170	28	19	27	24	1.99
47765766--47765799	15	2.3	15	94	0	59	23	0	2	73	0.97
47765811--47765856	23	2.0	23	83	8	58	41	10	15	32	1.82
47768607--47768658	22	2.4	21	80	6	59	26	1	3	67	1.18
47768631--47768660	16	1.9	15	93	6	51	33	0	6	60	1.23
47769629--47769668	17	2.5	15	84	11	53	62	5	0	32	1.17
47769600--47769668	8	8.1	8	73	20	52	59	5	2	31	1.36
47771692--47771716	13	1.9	13	100	0	50	36	24	8	32	1.84
47775198--47775224	12	2.2	12	100	0	54	44	0	7	48	1.31
47775921--47776117	10	20.9	9	67	18	55	34	2	4	59	1.29
47775959--47776009	18	2.7	18	76	11	50	25	0	5	68	1.12
47781549--47781603	23	2.4	23	78	3	67	47	0	12	40	1.42
47781826--47781855	3	9.7	3	92	7	51	33	0	0	66	0.92
47782512--47782565	19	2.8	19	77	0	54	72	1	1	24	1.05
47782780--47782901	10	12.6	10	71	16	62	29	4	2	63	1.25
47782783--47782882	29	3.5	28	76	10	96	31	5	2	62	1.28
47782812--47782942	9	13.7	9	70	17	77	29	2	2	65	1.17
47782841--47782955	50	2.3	49	81	12	128	28	0	2	67	1.09
47782932--47782958	6	4.5	6	100	0	54	14	0	0	85	0.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47782927--47782968	22	1.9	22	85	9	59	16	2	0	80	0.81
47783030--47783253	88	2.6	85	78	12	215	31	10	20	38	1.86
47784236--47784299	25	2.7	23	84	15	87	45	0	0	54	0.99
47784319--47784368	20	2.6	19	78	6	57	72	0	4	24	1.02
47790764--47790851	44	2.0	46	84	8	119	32	6	23	36	1.82
47790932--47791059	57	2.2	59	86	8	172	53	1	0	44	1.15
47794222--47794248	14	1.9	14	100	0	54	40	0	14	44	1.46
47795337--47795454	23	5.1	23	80	8	132	43	12	14	29	1.82
47795335--47795454	46	2.6	46	80	5	152	43	12	15	29	1.83
47804085--47804150	20	3.4	19	72	19	57	40	1	4	53	1.31
47804085--47804158	21	3.8	21	77	18	72	37	2	4	55	1.33
47809808--47809880	19	3.6	19	77	15	67	36	2	2	57	1.27
47809868--47809906	16	2.5	15	88	12	53	41	0	0	58	0.98
47810543--47810580	16	2.2	18	86	9	53	28	2	0	68	1.03
47810936--47811028	44	2.1	44	90	6	143	32	4	26	36	1.76
47810936--47811040	44	2.5	41	77	18	110	32	3	26	37	1.75
47811141--47811257	55	2.1	54	81	7	128	50	4	0	44	1.27
47819692--47819738	11	4.3	11	86	0	58	2	8	19	70	1.24
47819692--47819733	22	1.9	22	90	0	66	2	9	16	71	1.23
47822590--47822656	3	22.3	3	73	11	57	29	5	4	59	1.41
47822590--47822642	24	2.2	24	83	6	63	30	7	3	58	1.43
47822988--47823068	29	2.8	29	78	1	90	34	3	2	59	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47823039--47823107	12	6.0	12	70	23	51	37	1	0	60	1.06
47824935--47824981	19	2.3	21	82	13	55	4	21	2	72	1.12
47830404--47830439	12	3.0	12	87	0	54	38	13	16	30	1.88
47830648--47830698	5	10.0	5	75	12	50	62	1	0	35	1.06
47830648--47830698	16	3.3	16	76	15	54	62	1	0	35	1.06
47836330--47836363	2	17.5	2	87	6	52	47	0	0	52	1.00
47836333--47836362	15	2.0	15	93	0	51	50	0	0	50	1.00
47836572--47836747	41	4.3	41	94	0	289	29	19	27	23	1.98
47838466--47838529	28	2.3	27	89	5	101	29	15	9	45	1.78
47840882--47840925	18	2.4	18	92	0	70	36	15	18	29	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204