genome.fa.s26.2.7.7.80.10.50.1000.53.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Length:  60343961

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  53  of  204  ( 24404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15497188--15497236	22	2.1	25	88	11	77	42	2	4	51	1.32
15505960--15506037	40	2.0	40	84	0	102	21	26	29	21	1.99
15506220--15506284	11	5.8	12	81	15	77	24	32	1	41	1.64
15506244--15506343	51	2.0	51	88	4	148	26	27	3	44	1.69
15506346--15506376	16	1.9	16	93	0	53	64	0	0	35	0.94
15507486--15507511	7	3.7	7	100	0	52	26	0	15	57	1.38
15508162--15508201	18	2.2	18	86	0	53	17	30	7	45	1.76
15508443--15508489	21	2.2	21	85	7	60	36	36	21	6	1.79
15508750--15508803	27	2.0	27	92	0	90	40	37	0	22	1.54
15508743--15509253	22	23.3	22	80	6	538	45	27	0	26	1.55
15508743--15509253	43	11.7	43	81	7	496	45	27	0	26	1.55
15508771--15509253	87	5.6	87	83	4	548	46	26	0	26	1.55
15510302--15510869	127	4.5	124	91	2	841	29	23	17	29	1.97
15514926--15514974	7	6.4	8	77	13	50	75	2	0	22	0.90
15516841--15516887	17	2.8	17	79	20	62	55	6	2	36	1.37
15517493--15517523	9	3.4	9	90	0	53	38	22	12	25	1.90
15526349--15526539	28	6.8	28	75	7	163	20	20	21	36	1.95
15526363--15526530	85	2.0	85	82	4	205	22	22	21	33	1.97
15526552--15526616	28	2.3	29	83	2	78	24	18	9	47	1.77
15539184--15539250	34	1.9	35	91	8	111	76	0	13	10	1.03
15539184--15539235	7	7.7	7	83	16	74	76	0	13	9	1.01
15540567--15540944	44	8.1	44	68	20	198	32	19	20	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15540567--15540995	142	3.0	141	95	0	750	33	18	20	27	1.96
15541060--15541736	50	13.5	50	63	12	190	34	22	20	23	1.97
15541042--15541735	100	6.9	97	79	7	606	34	22	19	23	1.97
15541060--15541736	200	3.4	198	80	4	673	34	22	20	23	1.97
15548557--15548587	16	1.9	16	93	0	53	9	9	9	70	1.33
15549739--15549778	19	2.1	19	86	9	55	55	7	5	32	1.50
15550725--15550781	12	4.5	12	83	16	55	15	0	5	78	0.91
15550725--15550769	6	7.7	6	80	14	58	17	0	2	80	0.82
15550723--15550769	17	2.7	17	87	9	60	19	0	4	76	0.95
15550725--15550781	29	2.0	28	86	10	80	15	0	5	78	0.91
15557935--15557981	18	2.6	18	100	0	94	10	14	0	74	1.07
15561514--15561586	37	2.0	37	83	5	94	27	23	15	34	1.94
15564327--15564371	11	4.0	11	82	2	54	8	6	0	84	0.78
15567087--15567124	20	2.0	20	89	5	60	31	18	26	23	1.97
15575800--15575844	22	2.0	22	87	8	65	26	2	20	51	1.59
15578320--15578361	21	1.9	23	85	9	61	50	21	4	23	1.68
15580416--15580513	27	3.5	28	90	2	135	26	13	28	31	1.94
15580444--15580526	27	3.0	27	87	5	96	30	12	25	32	1.92
15580416--15580527	28	4.0	27	83	6	98	28	12	25	33	1.92
15588366--15588463	27	3.5	28	90	2	135	26	13	28	31	1.94
15588394--15588476	27	3.0	27	87	5	96	30	12	25	32	1.92
15588366--15588477	28	4.0	27	83	6	98	28	12	25	33	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15605379--15605423	22	2.0	22	95	0	81	48	13	13	24	1.78
15615909--15615986	37	2.1	37	85	4	104	17	14	30	37	1.90
15635544--15635581	20	1.9	20	100	0	76	31	15	15	36	1.90
15637838--15637954	62	1.9	62	84	5	159	50	4	4	41	1.41
15637933--15637981	20	2.7	18	77	22	57	51	4	2	42	1.32
15638874--15638904	16	1.9	16	93	0	53	70	9	9	9	1.33
15639739--15639785	24	1.9	24	86	4	67	34	0	38	27	1.57
15640883--15640984	28	3.7	28	90	2	161	25	22	23	28	1.99
15648758--15648788	12	2.6	12	100	0	62	12	48	19	19	1.81
15653842--15653873	11	2.6	13	90	9	50	65	0	3	31	1.08
15656043--15656126	15	5.6	15	69	5	53	52	15	25	7	1.68
15656043--15656128	20	4.3	20	70	11	59	52	16	24	6	1.68
15657107--15657268	42	3.9	42	73	3	146	16	35	25	23	1.95
15657297--15657379	42	2.0	42	80	4	96	20	38	20	20	1.94
15668944--15669010	22	3.0	22	82	0	71	43	23	20	11	1.85
15672053--15672294	50	4.7	50	86	3	295	21	28	22	27	1.99
15682240--15682299	30	2.0	30	90	3	95	30	5	10	55	1.54
15682359--15682392	16	2.2	15	89	5	50	44	0	0	55	0.99
15687436--15687464	9	3.2	9	100	0	58	10	0	0	89	0.48
15696829--15696882	21	2.6	20	80	16	65	72	7	5	14	1.26
15698517--15698561	12	4.0	12	85	8	51	73	2	6	17	1.15
15698470--15698550	28	2.9	28	78	12	87	69	3	9	17	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15702276--15702311	17	2.1	18	94	5	65	16	41	25	16	1.89
15716599--15716641	12	3.7	11	78	9	50	62	4	0	32	1.15
15719177--15719223	5	9.2	5	97	2	85	21	19	0	59	1.38
15720661--15720697	18	2.1	18	89	0	56	45	18	0	35	1.50
15721476--15721518	22	2.0	22	90	0	68	34	20	25	18	1.96
15723581--15723639	30	1.9	30	82	3	73	25	20	3	50	1.63
15723764--15723802	20	2.0	19	85	5	51	15	20	0	64	1.30
15724483--15724547	28	2.3	27	76	5	76	32	23	23	21	1.98
15724847--15724890	2	22.0	2	100	0	88	50	0	0	50	1.00
15724928--15725081	27	5.7	27	81	3	175	26	14	17	41	1.88
15733317--15733577	27	9.7	26	85	4	279	26	16	16	39	1.90
15733301--15733577	81	3.4	81	87	3	326	26	17	16	39	1.90
15738498--15738523	6	4.3	6	100	0	52	30	0	0	69	0.89
15747143--15747191	15	3.3	14	77	11	53	79	4	0	16	0.88
15747271--15747322	26	2.0	27	88	3	79	40	40	3	15	1.65
15748685--15748762	28	2.8	28	80	7	95	32	10	1	56	1.41
15750701--15750730	2	15.0	2	92	0	51	46	0	0	53	1.00
15750778--15750812	14	2.5	14	85	0	52	31	2	2	62	1.24
15750858--15750902	18	2.6	18	83	13	58	44	0	4	51	1.21
15759897--15760257	116	3.4	106	79	12	386	32	14	19	33	1.92
15761090--15761131	18	2.3	18	88	8	59	64	2	4	28	1.26
15761869--15761912	21	2.1	21	91	4	72	38	4	0	56	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15761869--15761909	19	2.1	19	90	9	64	36	4	0	58	1.20
15766636--15766946	33	8.8	33	66	22	132	20	20	27	31	1.98
15766631--15766807	75	2.4	75	96	0	327	20	18	28	32	1.96
15766669--15766805	42	3.5	42	76	17	175	21	17	28	32	1.96
15766709--15766906	102	1.9	102	91	0	324	20	21	28	29	1.98
15770365--15770413	23	2.2	22	85	10	64	48	2	10	38	1.48
15770465--15770510	21	2.3	19	82	10	56	45	13	6	34	1.69
15770626--15770667	21	2.0	21	90	0	66	40	16	7	35	1.76
15770913--15770945	17	2.0	17	88	5	50	57	18	9	15	1.63
15776238--15776263	13	2.0	13	100	0	52	15	15	0	69	1.20
15776241--15776371	57	2.3	56	81	7	140	24	17	6	51	1.67
15783382--15783611	89	2.6	89	80	3	237	25	13	26	34	1.93
15789627--15789665	15	2.5	15	84	15	53	0	12	2	84	0.72
15789628--15789660	15	2.3	14	94	5	57	0	15	0	84	0.61
15789619--15789671	16	3.3	15	78	19	54	1	11	5	81	0.94
15790752--15790800	21	2.3	21	82	10	64	48	0	20	30	1.50
15799609--15799953	124	2.8	121	90	3	550	28	16	22	32	1.96
15800911--15800935	7	3.6	7	100	0	50	60	12	0	28	1.32
15802018--15802081	31	2.1	31	91	2	103	67	0	0	32	0.91
15802018--15802082	10	6.5	10	75	7	60	66	0	0	33	0.92
15802093--15802181	40	2.2	40	97	0	169	41	0	26	31	1.56
15802641--15802702	30	2.1	30	88	5	92	53	4	1	40	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15813318--15813369	12	4.1	12	74	13	50	34	5	3	55	1.42
15813321--15813375	27	2.0	27	96	0	101	30	3	5	60	1.37
15813327--15813384	27	2.1	27	81	6	64	34	6	6	51	1.55
15814861--15814932	36	2.0	36	82	15	87	55	2	2	38	1.29
15818338--15818391	22	2.5	22	71	0	54	62	11	9	16	1.52
15821453--15821481	12	2.3	13	94	5	51	58	13	6	20	1.58
15829487--15829590	25	4.3	25	82	8	117	41	19	21	18	1.91
15831014--15831077	13	4.9	13	90	0	101	26	9	25	39	1.86
15835664--15835715	20	2.5	21	80	20	65	23	3	7	65	1.35
15836046--15836070	12	2.1	12	100	0	50	64	0	0	36	0.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204