genome.fa.s26.2.7.7.80.10.50.1000.161.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Length:  60343961

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  161  of  204  ( 24404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48726013--48726262	100	2.4	103	88	6	364	26	24	29	20	1.99
48733208--48733265	30	1.9	30	89	0	89	41	3	24	31	1.71
48733477--48733508	13	2.5	13	94	0	55	31	0	12	56	1.37
48733603--48733844	50	4.7	50	86	4	297	26	24	29	19	1.99
48733603--48733852	100	2.4	103	88	6	364	26	24	29	20	1.99
48749048--48749235	61	3.1	60	70	14	188	48	5	2	43	1.39
48749016--48749308	120	2.4	120	91	1	471	50	4	2	43	1.34
48749132--48749183	15	3.6	15	80	12	56	53	1	0	44	1.11
48749051--48749234	59	3.1	59	67	20	155	48	5	2	42	1.39
48749122--48749312	59	3.2	58	67	19	131	52	3	2	42	1.29
48749315--48749528	88	2.4	88	85	7	279	46	3	3	47	1.35
48749400--48749528	44	2.8	44	73	13	118	45	2	3	48	1.33
48752496--48752551	12	4.8	12	78	14	55	48	1	8	41	1.45
48753499--48753537	8	5.1	8	81	12	55	64	25	0	10	1.25
48755580--48755645	24	2.5	26	80	11	73	37	7	1	53	1.39
48755822--48755861	11	3.7	11	86	6	64	75	0	25	0	0.81
48755987--48756030	3	14.7	3	100	0	88	0	0	31	68	0.90
48759149--48759175	11	2.5	11	100	0	54	40	14	7	37	1.74
48762172--48762270	49	2.0	48	96	1	180	49	16	6	28	1.69
48762188--48762323	24	5.4	25	66	24	90	52	12	5	29	1.60
48762172--48762320	49	3.0	49	86	7	169	51	13	5	30	1.63
48762374--48762467	37	2.6	36	79	11	95	0	34	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48762357--48762464	18	5.5	18	71	22	67	0	32	0	67	0.91
48762353--48762440	31	3.0	30	71	21	78	0	29	0	70	0.88
48762353--48762469	23	5.2	23	72	17	77	0	32	0	67	0.91
48762598--48762663	27	2.6	25	88	9	89	48	0	13	37	1.43
48767398--48767491	44	2.1	44	96	0	170	36	12	7	43	1.71
48767416--48767486	22	3.2	22	63	21	58	42	12	7	38	1.70
48767470--48767513	22	2.0	22	86	4	63	43	11	4	40	1.61
48768103--48768127	13	1.9	13	100	0	50	40	28	8	24	1.83
48770764--48770820	20	2.9	20	69	10	55	40	0	0	59	0.97
48773862--48773957	48	2.0	48	93	0	165	37	9	21	31	1.85
48777532--48777571	21	1.9	21	89	0	62	55	0	7	37	1.29
48778229--48778265	18	2.0	19	89	5	58	32	10	13	43	1.79
48799368--48799497	65	2.0	65	98	0	251	36	20	4	37	1.74
48800592--48800724	38	3.5	36	79	12	124	30	27	20	21	1.98
48800653--48800737	38	2.2	38	100	0	170	34	25	18	21	1.96
48802003--48802043	8	5.0	8	94	5	73	60	0	0	39	0.96
48804929--48804980	26	2.0	26	100	0	104	23	19	11	46	1.82
48805309--48805357	25	2.0	26	84	11	68	36	10	8	44	1.68
48810811--48810893	42	2.0	42	97	0	157	30	14	14	40	1.86
48811721--48811798	26	3.1	26	76	12	65	19	20	21	38	1.94
48811899--48811976	25	3.0	27	78	10	65	20	23	21	34	1.97
48814569--48814659	25	3.5	25	66	21	69	48	14	1	36	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48818567--48818633	30	2.2	29	82	12	82	38	10	8	41	1.71
48818567--48818645	31	2.6	29	82	11	88	36	10	8	44	1.70
48822515--48822741	125	1.8	125	95	0	409	28	16	22	32	1.96
48825772--48826010	115	2.1	116	94	0	417	44	9	8	37	1.68
48826004--48826358	29	14.9	22	73	24	116	28	0	26	44	1.57
48826036--48826315	21	13.0	21	71	20	111	27	0	27	44	1.55
48826078--48826263	29	6.2	29	71	23	143	27	0	27	44	1.55
48826015--48826235	95	2.3	94	92	2	370	28	0	28	43	1.55
48826176--48826263	29	3.1	29	96	1	160	28	0	26	45	1.54
48826079--48826359	123	2.3	123	96	2	519	28	0	26	44	1.54
48826080--48826378	95	3.1	97	79	12	286	28	0	26	45	1.54
48826341--48826374	16	2.1	16	100	0	68	29	0	29	41	1.57
48826374--48826511	25	5.7	25	79	14	173	43	14	0	41	1.50
48826384--48826565	44	4.0	44	79	12	213	46	13	0	39	1.48
48826988--48827022	18	1.9	18	94	0	61	34	8	31	25	1.86
48827672--48827703	7	4.6	7	100	0	64	59	12	0	28	1.34
48827874--48827911	20	1.9	20	84	10	51	55	7	2	34	1.43
48828805--48828847	11	3.8	12	81	6	54	58	0	0	41	0.98
48828853--48828883	11	2.8	11	90	0	53	51	6	22	19	1.69
48829509--48829627	10	12.7	9	69	16	64	66	3	1	28	1.17
48829509--48829627	29	4.2	28	78	10	109	66	3	1	28	1.17
48829553--48829637	29	2.9	29	82	8	75	65	5	3	24	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48831183--48831230	3	16.0	3	100	0	96	66	0	0	33	0.92
48835584--48835721	68	2.0	68	100	0	276	33	13	23	29	1.93
48839633--48839696	19	3.4	19	86	0	92	37	9	12	40	1.75
48842519--48842564	24	1.9	24	86	0	65	47	15	26	10	1.78
48846568--48846780	44	4.8	44	68	11	112	28	17	24	29	1.97
48846487--48847511	132	7.8	132	93	0	1730	28	18	23	28	1.98
48846832--48847027	44	4.4	45	63	13	102	29	16	25	29	1.96
48847839--48847945	19	5.6	19	88	0	169	39	9	13	38	1.76
48847846--48847945	38	2.6	38	98	0	191	40	9	12	39	1.74
48849719--48849757	20	1.9	20	84	5	51	69	0	7	23	1.14
48849929--48849965	20	1.9	20	88	5	58	67	5	0	27	1.12
48853060--48853088	7	4.1	7	100	0	58	27	13	13	44	1.82
48855253--48855284	16	2.0	16	100	0	64	31	12	31	25	1.92
48855476--48855521	22	2.1	22	95	0	83	17	6	39	36	1.76
48857723--48857752	14	2.1	14	93	0	51	30	10	0	60	1.30
48883127--48883170	21	2.1	21	100	0	88	27	29	11	31	1.91
48885280--48885322	18	2.4	18	92	0	68	27	25	20	25	1.99
48889674--48889701	6	4.7	6	100	0	56	85	0	14	0	0.59
48893452--48893503	27	1.9	27	84	0	68	32	25	11	30	1.91
48894196--48894252	25	2.2	25	96	3	105	29	21	3	45	1.68
48898812--48898887	7	10.9	7	100	0	152	57	0	14	27	1.37
48900617--48900746	64	2.0	63	94	1	224	43	5	8	42	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48906789--48906851	25	2.5	25	86	0	81	31	20	23	23	1.98
48906793--48906875	25	3.3	24	81	9	78	31	22	21	24	1.98
48907029--48907090	31	2.0	32	84	9	83	45	6	14	33	1.71
48909270--48909314	7	6.4	7	80	10	56	55	13	4	26	1.57
48910288--48910336	24	2.0	24	100	0	98	34	16	28	20	1.94
48911051--48911095	19	2.4	19	85	7	56	57	6	6	28	1.50
48911083--48911124	18	2.4	18	80	15	52	66	0	4	28	1.12
48911027--48911154	56	2.3	55	80	13	143	60	3	6	29	1.39
48911062--48911144	28	3.0	28	72	12	80	59	3	7	30	1.42
48911119--48911193	21	3.7	21	71	16	59	57	4	8	30	1.46
48911358--48911395	19	2.0	20	89	5	60	42	2	0	55	1.14
48911440--48911631	91	2.1	89	84	8	239	32	9	22	35	1.86
48913715--48913842	55	2.3	55	75	2	130	23	13	21	42	1.88
48919947--48920100	70	2.2	70	96	0	281	31	8	25	35	1.86
48925481--48925505	7	3.6	7	100	0	50	76	0	12	12	1.04
48926971--48927016	20	2.2	20	84	3	56	8	28	13	50	1.70
48929249--48929285	3	12.3	3	94	0	65	64	0	2	32	1.07
48935627--48935679	26	2.0	26	100	0	106	33	15	15	35	1.88
48937661--48937690	3	10.0	3	100	0	60	0	33	33	33	1.58
48945437--48945461	2	12.5	2	100	0	50	52	0	0	48	1.00
48949934--48949989	21	2.5	22	83	13	71	69	1	7	21	1.22
48950889--48950939	9	5.9	9	77	9	52	74	5	11	7	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48950888--48950941	25	2.2	26	86	10	85	75	5	11	7	1.16
48950895--48950950	25	2.3	25	93	3	96	75	5	10	8	1.19
48950932--48950964	17	2.0	17	88	5	50	75	6	15	3	1.11
48951635--48952436	44	17.8	47	67	19	200	30	20	17	31	1.96
48951633--48951990	137	2.6	137	87	1	495	29	19	17	32	1.95
48951830--48952127	92	3.3	92	73	12	308	31	18	17	31	1.95
48952145--48952525	44	8.6	44	72	7	243	29	22	18	29	1.97
48951772--48952214	181	2.4	180	85	4	613	30	21	17	30	1.96
48951963--48952478	223	2.3	224	84	2	662	30	21	18	30	1.96
48953397--48953438	19	2.2	19	86	0	57	7	11	0	80	0.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204