genome.fa.s26.2.7.7.80.10.50.1000.143.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Length:  60343961

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  143  of  204  ( 24404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43928542--43928885	44	7.8	44	73	8	182	29	19	19	31	1.97
43928633--43928743	41	2.7	41	94	2	188	29	16	21	32	1.95
43928748--43929448	143	4.9	143	85	1	867	27	20	20	30	1.98
43928955--43929169	44	4.6	45	66	13	112	26	21	23	29	1.99
43942133--43942183	21	2.4	21	90	0	75	1	45	17	35	1.60
43947592--43948167	9	67.4	9	65	20	168	36	2	18	43	1.62
43947605--43948086	16	30.1	16	64	22	92	36	2	17	44	1.60
43947622--43947687	25	2.6	25	87	0	87	34	0	18	46	1.49
43947681--43947869	25	7.5	25	74	12	97	37	3	16	43	1.64
43947708--43947958	41	6.0	41	77	8	211	37	2	17	43	1.62
43947834--43948158	25	13.4	24	71	15	120	36	1	18	43	1.61
43947714--43947992	41	6.9	41	77	12	177	37	2	16	43	1.60
43947976--43948053	41	1.9	41	94	0	138	39	2	15	42	1.61
43948861--43948933	21	3.3	21	69	23	60	61	5	2	30	1.32
43949355--43949379	10	2.5	10	100	0	50	44	20	8	28	1.79
43949321--43949424	45	2.3	44	85	11	131	42	18	6	32	1.76
43949324--43949404	19	4.9	18	68	28	65	44	18	6	30	1.74
43951438--43951521	7	12.0	7	75	8	73	45	38	0	16	1.48
43951455--43951533	14	5.6	14	71	15	56	48	34	0	17	1.48
43951647--43951694	20	2.3	20	75	3	51	50	31	0	18	1.48
43952044--43952297	114	2.2	113	90	2	402	24	22	18	34	1.96
43953636--43953665	15	2.0	15	93	0	51	60	6	3	30	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43954386--43954415	16	1.9	15	93	6	51	10	6	6	76	1.15
43957479--43957503	13	1.9	13	100	0	50	36	0	8	56	1.29
43962361--43962410	25	2.0	25	100	0	100	32	20	8	40	1.81
43968373--43968411	6	6.2	6	85	8	51	15	2	5	76	1.06
43968838--43968882	24	1.9	23	86	4	63	13	0	26	60	1.34
43972599--43972629	13	2.4	13	94	0	53	22	29	3	45	1.68
43973185--43973252	21	3.2	21	79	4	82	47	5	11	35	1.65
43978434--43978509	29	2.6	29	89	2	107	43	0	38	18	1.50
43978440--43978524	29	2.9	29	84	3	100	42	0	38	18	1.51
43979528--43979611	29	2.8	30	78	7	91	25	15	27	32	1.95
43983727--43983765	15	2.6	15	88	8	53	28	35	15	20	1.93
43988017--43988065	20	2.7	18	77	22	57	51	4	2	42	1.32
43989712--43989743	15	2.1	15	94	0	55	68	9	6	15	1.36
43995642--43995775	71	1.9	71	90	0	214	27	13	18	40	1.88
43996084--43996111	7	4.0	7	100	0	56	14	0	0	85	0.59
43998354--43998413	15	3.8	15	75	12	57	36	0	6	56	1.26
44001325--44001394	36	2.0	35	91	2	113	8	42	10	38	1.69
44001329--44001409	36	2.2	36	82	0	99	11	38	9	40	1.74
44004704--44004738	6	5.7	6	89	3	52	51	2	0	45	1.16
44006910--44006968	25	2.4	25	97	0	109	45	6	20	27	1.76
44014446--44014495	3	16.7	3	80	15	50	32	6	0	62	1.20
44014446--44014491	12	3.9	11	81	13	56	32	6	0	60	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44016478--44016718	130	1.9	130	96	0	446	20	22	17	39	1.92
44016830--44016866	19	1.9	19	94	0	65	8	27	24	40	1.83
44019828--44019867	15	2.6	16	81	18	50	47	0	0	52	1.00
44019886--44020073	61	3.1	61	71	9	204	41	1	7	49	1.40
44019828--44020110	120	2.3	120	94	0	503	42	1	5	50	1.33
44019938--44019989	15	3.6	15	80	12	56	42	0	3	53	1.19
44020067--44020108	15	2.7	16	82	14	52	45	0	2	52	1.13
44020058--44020099	15	2.9	15	82	10	52	47	0	0	52	1.00
44020321--44020358	16	2.4	16	86	0	58	28	34	2	34	1.71
44020896--44020930	18	2.0	17	88	5	52	54	0	0	45	0.99
44020911--44021221	61	5.2	61	69	14	259	47	6	2	43	1.41
44021016--44021050	18	2.0	17	88	5	52	54	0	0	45	0.99
44021134--44021170	16	2.2	17	86	13	51	54	0	2	43	1.14
44021254--44021290	16	2.2	17	86	13	51	54	0	2	43	1.14
44021237--44021290	15	3.4	16	80	19	53	51	0	1	46	1.11
44021212--44021294	28	2.8	29	70	12	71	53	1	2	43	1.21
44020888--44021291	120	3.4	120	97	0	745	48	4	2	44	1.36
44021230--44021512	90	3.0	96	87	8	306	48	3	2	46	1.30
44021332--44021473	44	3.2	44	70	18	139	49	2	1	46	1.25
44021298--44021512	90	2.4	91	92	1	360	46	4	2	46	1.34
44021424--44021472	17	3.1	16	83	13	57	53	2	0	44	1.12
44021354--44021497	47	3.2	46	71	18	147	50	4	1	44	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44030220--44030263	19	2.3	19	81	18	56	20	9	15	54	1.68
44030119--44030413	156	1.9	156	85	1	412	27	13	17	40	1.88
44036173--44036231	30	2.0	30	89	0	91	11	23	35	28	1.91
44045818--44045850	5	6.8	5	93	6	59	81	0	0	18	0.68
44046188--44046213	6	4.3	6	100	0	52	80	0	0	19	0.71
44048184--44048699	89	5.8	88	75	6	423	29	24	16	30	1.96
44048194--44048722	133	4.0	133	89	1	747	29	24	16	29	1.96
44048222--44048723	44	11.3	44	71	10	243	29	23	16	29	1.97
44048913--44048941	3	9.7	3	100	0	58	31	0	0	68	0.89
44065688--44065725	19	2.0	19	85	10	51	78	0	0	21	0.74
44068957--44069001	23	2.0	23	90	0	72	57	4	6	31	1.44
44069050--44069349	24	12.8	24	67	13	133	53	5	6	35	1.48
44069072--44069333	69	3.8	69	75	9	187	52	5	6	35	1.51
44069139--44069225	45	2.0	44	81	6	104	54	3	6	35	1.44
44069139--44069333	70	2.8	68	75	10	171	53	5	6	34	1.49
44069658--44069709	27	2.0	26	81	11	61	65	0	13	21	1.26
44070858--44070917	21	2.9	21	85	9	86	26	0	3	70	1.03
44073659--44073716	24	2.3	25	85	8	82	25	8	15	50	1.73
44074668--44074791	66	1.9	66	94	0	221	33	8	20	36	1.84
44075157--44075260	47	2.2	48	77	11	106	43	0	1	54	1.11
44075055--44075357	120	2.5	120	96	0	554	42	0	3	53	1.21
44076495--44076547	14	3.9	14	87	2	63	28	1	0	69	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44076514--44076562	3	16.3	3	80	16	57	32	0	2	65	1.04
44076928--44076967	7	5.6	7	83	16	55	30	2	0	67	1.04
44088567--44089023	44	10.3	44	79	2	450	31	16	23	29	1.96
44088567--44089023	89	5.1	89	89	1	650	31	16	23	29	1.96
44089031--44089149	44	2.8	42	85	8	145	29	17	25	27	1.98
44089031--44089151	42	2.9	41	82	11	147	30	17	24	27	1.97
44090756--44090781	4	6.5	4	100	0	52	23	0	0	76	0.78
44090908--44091489	114	5.1	114	73	10	490	34	16	20	29	1.94
44090908--44091507	227	2.6	227	89	3	877	34	16	20	28	1.94
44091424--44091563	74	1.9	75	86	4	203	31	17	21	29	1.96
44091289--44091678	188	2.1	188	92	0	645	31	15	22	30	1.95
44091424--44091582	74	2.1	75	82	4	196	34	17	20	27	1.95
44092105--44092148	7	6.6	7	84	10	65	15	0	50	34	1.45
44092098--44092137	21	1.9	21	94	0	71	17	0	47	35	1.48
44092110--44092148	12	3.1	12	92	7	60	15	0	51	33	1.44
44092117--44092169	19	2.7	20	82	5	54	20	0	43	35	1.52
44092110--44092163	26	2.1	26	82	6	65	20	0	46	33	1.51
44092105--44092170	33	2.0	33	84	0	87	19	0	45	34	1.51
44092548--44092574	14	1.9	14	100	0	54	48	0	7	44	1.31
44092611--44092651	18	2.3	18	91	4	66	82	0	4	12	0.81
44093125--44093535	198	2.1	197	89	1	617	28	16	19	34	1.94
44094035--44094059	10	2.5	10	100	0	50	48	12	8	32	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44094858--44094930	7	10.3	7	82	2	92	4	13	12	69	1.32
44094856--44094930	21	3.5	21	83	1	105	5	13	12	69	1.35
44095332--44095739	99	4.1	100	96	0	757	40	7	3	48	1.49
44095809--44095860	13	4.0	13	92	0	77	46	9	1	42	1.47
44095828--44095964	53	2.6	54	84	1	195	37	10	5	46	1.60
44096109--44096306	9	22.8	9	70	11	126	44	21	3	31	1.67
44096140--44096279	25	5.4	25	75	6	111	45	19	3	31	1.67
44096213--44096317	25	4.2	25	76	11	106	45	19	2	32	1.65
44103336--44103373	16	2.4	16	95	0	67	26	34	2	36	1.71
44112134--44112182	23	2.2	22	85	10	64	44	0	18	36	1.50

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204