genome.fa.s26.2.7.7.80.10.50.1000.169.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Length:  60343961

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  169  of  204  ( 24404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50540713--50541077	124	2.9	124	90	2	536	33	18	15	32	1.92
50546838--50546866	3	9.7	3	100	0	58	31	0	0	68	0.89
50554020--50554300	50	5.6	50	82	0	328	25	22	30	21	1.99
50554019--50554300	150	1.9	150	84	0	384	25	21	30	21	1.99
50561235--50561315	3	27.0	3	83	0	99	33	6	1	59	1.30
50561244--50561306	24	2.6	24	97	0	117	34	6	0	58	1.23
50562099--50562127	14	2.1	14	100	0	58	24	27	20	27	1.99
50564552--50564581	11	2.6	11	94	5	51	60	0	3	36	1.14
50571084--50571127	22	2.0	22	82	8	54	34	2	0	63	1.07
50579626--50579663	19	2.0	20	89	5	60	55	5	2	36	1.37
50579873--50579931	26	2.3	26	100	0	118	20	25	32	22	1.98
50579883--50579940	26	2.5	23	86	13	75	24	24	32	18	1.97
50580940--50580977	6	6.2	6	90	3	58	36	44	0	18	1.50
50581568--50581637	7	9.4	7	80	10	50	51	31	0	17	1.45
50581568--50581637	15	4.7	14	82	7	59	51	31	0	17	1.45
50581946--50581975	12	2.5	12	94	0	51	60	3	10	26	1.45
50581969--50582036	12	5.4	12	71	20	50	66	1	1	30	1.10
50583370--50583967	143	4.2	143	90	0	910	28	22	19	29	1.98
50583600--50583860	44	5.7	44	70	11	164	26	24	20	29	1.99
50585864--50585949	45	1.9	45	90	0	136	33	20	16	29	1.95
50585960--50586137	51	3.5	50	75	7	173	32	26	15	24	1.96
50585958--50586142	101	1.8	101	87	5	275	32	27	16	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50587229--50587402	45	3.9	44	82	4	204	26	22	18	31	1.98
50587231--50587402	90	1.9	90	85	2	238	26	22	19	31	1.98
50589617--50589686	14	4.9	14	77	10	61	8	11	0	80	0.92
50589631--50589688	23	2.6	23	88	2	82	10	8	0	81	0.89
50589668--50589730	29	2.2	28	83	11	83	19	1	6	73	1.13
50591203--50591250	25	1.9	25	95	0	87	45	29	8	16	1.76
50593468--50593505	19	2.0	20	89	5	60	55	5	2	36	1.37
50593688--50593726	15	2.7	14	78	21	53	64	0	0	35	0.94
50593706--50593747	21	1.9	22	85	9	59	64	2	0	33	1.07
50594802--50594831	11	2.6	11	94	5	51	0	0	10	90	0.47
50597530--50597656	55	2.3	55	81	0	155	25	23	29	22	1.99
50604228--50604351	55	2.3	55	88	0	176	20	18	33	28	1.96
50604429--50604513	43	2.0	43	88	0	125	21	30	28	20	1.98
50608388--50608435	12	3.9	12	76	15	53	4	20	0	75	0.97
50609134--50609175	21	2.0	21	85	0	57	33	7	28	30	1.84
50615387--50615425	18	2.2	18	85	0	51	25	5	5	64	1.35
50616756--50616808	27	2.0	26	88	3	79	32	30	20	16	1.95
50616690--50616883	102	1.9	98	87	6	282	34	27	17	20	1.95
50617947--50617980	11	2.8	12	91	8	52	35	8	11	44	1.72
50619721--50619772	20	2.5	20	87	6	68	36	1	17	44	1.60
50625111--50625728	75	8.2	75	84	3	699	28	16	18	35	1.93
50625111--50625728	151	4.1	150	84	3	749	28	16	18	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50626035--50626114	30	2.6	31	80	6	99	32	17	5	45	1.70
50626861--50626926	4	18.0	4	75	17	63	74	0	25	0	0.82
50626861--50626926	7	9.0	8	73	17	63	74	0	25	0	0.82
50626854--50626937	11	8.0	10	73	15	53	73	0	25	1	0.90
50626881--50626925	15	3.3	15	74	25	55	75	0	24	0	0.80
50626895--50626937	6	7.0	6	80	15	52	79	0	20	0	0.74
50626863--50626937	31	2.3	31	86	11	96	76	0	24	0	0.80
50626861--50626932	25	2.8	25	93	6	119	75	0	25	0	0.81
50629164--50629195	12	2.6	13	85	14	50	81	0	0	18	0.70
50630835--50631058	45	4.9	43	71	13	135	25	25	16	31	1.97
50630827--50631073	88	2.7	90	78	7	266	25	27	16	31	1.96
50639062--50639099	20	1.9	20	100	0	76	31	13	23	31	1.93
50642882--50642942	28	2.2	27	82	2	68	45	9	11	32	1.73
50648396--50648472	41	1.9	39	86	5	109	22	19	27	31	1.98
50655983--50656084	24	4.2	24	77	7	107	35	22	25	16	1.95
50655984--50656078	49	1.9	49	82	4	120	33	23	27	15	1.95
50661830--50661870	22	2.0	20	90	9	64	63	0	36	0	0.95
50674617--50674676	10	6.2	10	75	7	61	65	1	1	31	1.13
50674613--50674702	29	3.2	28	84	6	110	60	2	3	34	1.26
50674965--50674996	11	3.1	11	82	17	50	21	9	0	68	1.17
50675015--50675073	19	3.2	18	79	9	66	44	1	0	54	1.10
50675003--50675061	26	2.3	26	85	5	75	44	1	0	54	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50676461--50676520	29	2.0	32	83	9	81	18	26	6	48	1.72
50677327--50677369	20	2.2	20	80	8	54	60	0	2	37	1.10
50678319--50678440	58	2.1	58	93	1	210	54	11	6	27	1.61
50678913--50678967	27	2.0	27	100	0	110	49	14	7	29	1.70
50680689--50680950	41	6.4	41	74	10	194	14	22	22	39	1.91
50680688--50680968	83	3.4	83	83	3	311	16	22	22	38	1.93
50681521--50681558	15	2.5	15	86	0	58	21	0	42	36	1.53
50681494--50681561	15	4.9	14	74	13	52	23	0	35	41	1.55
50683284--50683320	10	3.7	10	92	0	65	43	0	13	43	1.44
50685851--50685930	16	5.0	16	74	15	67	48	16	1	33	1.54
50685889--50685929	13	2.8	15	85	14	59	46	19	0	34	1.50
50685993--50686198	34	6.7	32	68	20	111	48	10	0	40	1.45
50686018--50686068	22	2.4	22	90	3	86	49	9	0	41	1.36
50685993--50686122	56	2.3	56	98	1	251	48	10	0	41	1.37
50686042--50686189	68	2.1	70	88	6	219	47	10	1	40	1.46
50686119--50686193	26	2.8	26	90	6	107	46	10	2	40	1.53
50686222--50686276	9	6.3	9	83	8	69	45	16	1	36	1.58
50686214--50686268	25	2.2	25	86	0	74	49	14	1	34	1.54
50686228--50686347	16	7.9	16	66	19	69	45	16	2	35	1.61
50686283--50686331	25	2.0	25	87	0	71	42	18	2	36	1.62
50691771--50691941	66	2.6	65	84	4	209	40	19	27	12	1.88
50691912--50691957	21	2.2	21	92	0	74	36	19	39	4	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50691961--50692018	21	2.8	21	86	0	89	37	13	43	5	1.67
50692321--50692675	43	8.2	43	75	5	277	23	18	29	28	1.98
50692321--50692592	130	2.1	129	81	6	309	20	16	31	31	1.95
50692340--50692592	87	2.9	86	88	2	364	22	16	31	29	1.96
50692824--50692866	22	2.0	22	90	0	68	44	27	18	9	1.80
50697527--50697562	15	2.5	14	86	8	54	44	8	0	47	1.33
50697881--50697924	3	14.7	3	100	0	88	34	31	0	34	1.58
50706280--50706630	44	7.9	43	76	9	204	30	17	21	29	1.97
50708200--50708286	39	2.1	41	85	10	117	29	2	4	63	1.27
50710976--50711019	19	2.3	19	88	0	61	56	27	2	13	1.49
50713076--50713134	29	2.0	29	96	0	109	54	0	8	37	1.31
50713139--50713176	9	4.2	9	100	0	76	31	10	10	47	1.72
50715448--50715490	3	14.3	3	85	9	61	67	0	0	32	0.91
50715448--50715504	12	4.8	12	77	14	55	68	1	0	29	1.00
50715450--50715506	15	3.9	15	81	9	64	68	1	0	29	1.00
50715709--50715747	19	2.0	21	85	10	55	69	5	10	15	1.34
50715949--50716024	21	3.7	21	89	7	129	36	10	10	42	1.74
50719537--50719586	22	2.4	19	83	12	55	54	0	2	44	1.11
50722380--50722478	51	1.9	52	83	6	130	43	8	23	25	1.81
50722612--50722636	7	3.6	7	100	0	50	24	0	28	48	1.52
50726764--50726943	43	4.2	43	80	2	157	28	27	18	25	1.98
50731017--50731193	92	2.0	88	85	10	243	24	10	12	52	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50731107--50731315	104	2.0	104	89	3	325	27	11	13	47	1.77
50732113--50732146	15	2.4	14	95	5	59	35	41	0	23	1.55
50732444--50732470	14	1.9	14	100	0	54	37	37	0	25	1.57
50732444--50732477	14	2.4	14	90	0	50	38	35	0	26	1.57
50732005--50732573	275	2.1	269	86	5	774	42	26	1	29	1.66
50732645--50732799	73	2.1	73	90	0	238	26	25	21	27	1.99
50732813--50732986	73	2.4	73	90	0	267	26	28	18	27	1.98
50732699--50732907	114	1.8	114	92	0	355	26	27	21	25	1.99
50732645--50733100	187	2.4	187	92	0	743	26	26	19	26	1.99
50732888--50733186	114	2.6	114	96	0	535	27	27	19	26	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204