genome.fa.s26.2.7.7.80.10.50.1000.165.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Length:  60343961

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  165  of  204  ( 24404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49769651--49769707	10	5.3	10	77	22	62	77	0	21	1	0.86
49769655--49769710	20	2.8	20	86	5	78	76	0	21	1	0.87
49770973--49771192	44	5.0	44	69	10	151	30	25	20	23	1.99
49770928--49771192	89	3.0	89	80	4	309	29	24	21	24	1.99
49770921--49771187	45	6.0	44	68	10	150	29	23	21	25	1.99
49771398--49771801	44	9.4	44	72	8	292	26	20	20	31	1.97
49771396--49771801	85	4.7	86	74	7	349	27	20	20	31	1.97
49771445--49771801	129	2.8	129	93	0	624	26	20	20	31	1.97
49773203--49773250	20	2.4	20	96	0	87	33	0	27	39	1.57
49773257--49773500	35	7.1	35	69	8	185	22	23	22	31	1.99
49773257--49773520	69	3.8	69	88	0	366	23	23	23	30	1.99
49773417--49773525	35	3.1	35	69	10	98	24	22	21	31	1.98
49772693--49774322	828	2.0	832	91	1	2662	32	11	18	37	1.87
49774031--49774078	20	2.4	20	92	0	78	35	0	25	39	1.56
49774087--49774341	35	7.4	35	69	9	157	21	21	24	33	1.97
49774099--49774341	69	3.6	69	78	5	233	21	20	23	33	1.97
49775399--49775456	23	2.5	23	77	5	55	41	6	17	34	1.76
49777448--49777500	3	17.3	3	96	3	97	66	1	0	32	1.03
49779032--49779195	44	3.8	44	76	4	161	21	23	24	30	1.99
49779181--49779912	134	5.4	133	73	9	527	27	21	20	30	1.98
49779181--49780092	180	5.1	180	97	0	1725	27	22	20	30	1.98
49779934--49780135	44	4.5	44	67	11	124	28	22	19	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49779305--49780135	134	6.2	133	76	8	625	27	22	19	30	1.98
49781540--49781593	7	8.0	7	79	8	58	16	16	0	66	1.25
49781535--49781592	20	2.9	20	84	5	82	15	18	0	65	1.27
49782526--49782554	6	4.8	6	100	0	58	17	0	13	68	1.20
49786988--49787037	16	3.1	16	82	0	64	48	0	8	44	1.32
49787014--49787176	64	2.6	64	94	1	274	49	2	11	36	1.53
49787404--49787453	3	16.3	3	95	4	91	66	2	0	32	1.03
49789678--49789721	18	2.4	19	85	11	65	25	9	0	65	1.21
49789744--49789796	3	17.7	3	82	0	52	33	5	1	58	1.32
49796393--49796438	20	2.3	20	100	0	92	52	4	30	13	1.59
49807628--49807886	128	2.0	129	91	1	421	32	12	24	30	1.92
49811718--49811744	6	4.5	6	100	0	54	48	0	33	18	1.49
49812560--49812597	16	2.2	18	86	9	53	65	0	10	23	1.23
49813598--49813643	24	1.9	24	86	8	67	52	0	0	47	1.00
49816031--49816112	42	2.0	42	92	0	137	30	12	8	48	1.70
49817983--49818009	12	2.2	12	100	0	54	33	29	14	22	1.94
49822481--49822573	46	2.0	46	95	0	168	29	21	11	37	1.89
49826266--49826295	6	5.2	6	92	8	53	16	0	0	83	0.65
49840123--49840178	20	2.7	22	83	10	73	26	17	16	39	1.91
49841004--49841645	320	2.0	320	100	0	1284	30	23	13	33	1.93
49842698--49842920	67	3.3	67	84	4	272	21	22	19	35	1.96
49843434--49843575	69	2.0	73	84	5	193	35	18	20	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49843713--49843760	19	2.4	21	83	16	66	62	8	10	18	1.52
49844258--49844311	8	7.1	8	71	12	51	57	3	0	38	1.17
49844258--49844315	14	3.9	15	76	10	57	56	3	0	39	1.16
49844527--49844597	3	23.7	3	88	0	88	60	2	4	32	1.30
49845997--49846443	132	3.4	131	82	4	526	28	24	17	29	1.98
49846017--49846183	88	1.9	87	81	3	201	28	25	18	27	1.98
49846138--49846226	44	2.0	43	84	2	115	25	26	20	26	1.99
49846321--49846529	88	2.4	88	88	0	310	28	22	16	32	1.96
49846333--49846886	132	4.2	129	82	7	562	28	22	17	31	1.96
49846199--49846661	220	2.1	220	91	0	739	28	23	17	31	1.97
49846129--49847063	352	2.7	351	84	4	1167	27	23	17	31	1.97
49846319--49846766	88	5.1	88	69	13	303	29	23	16	31	1.96
49846422--49846925	132	3.8	132	89	1	778	27	23	17	31	1.97
49846818--49847013	88	2.2	88	100	0	392	23	21	20	33	1.97
49853735--49853788	8	7.1	8	71	12	51	57	3	0	38	1.17
49854007--49854077	3	23.7	3	85	0	97	61	2	2	32	1.24
49855331--49855456	45	2.8	45	81	0	144	21	19	14	45	1.85
49856770--49856820	3	17.0	3	100	0	102	66	0	0	33	0.92
49861056--49861094	21	1.9	20	89	5	60	38	5	7	48	1.54
49861549--49861807	109	2.4	109	89	0	383	35	18	15	30	1.92
49862160--49862201	16	2.8	16	82	10	54	38	7	11	42	1.69
49862216--49862375	45	3.9	41	76	14	145	48	1	8	41	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49862326--49862368	15	2.9	14	80	10	50	55	2	2	39	1.25
49862324--49862373	13	3.5	15	75	24	54	54	2	2	42	1.23
49862210--49862384	14	12.5	14	69	15	67	49	1	8	40	1.42
49862221--49862366	2	75.0	2	69	10	61	48	2	7	41	1.43
49862466--49862547	29	2.7	29	77	21	78	58	1	10	29	1.40
49862464--49862523	3	20.3	3	75	3	50	61	1	8	28	1.34
49868213--49868255	17	2.5	17	88	3	59	27	30	25	16	1.97
49868212--49868278	18	3.8	17	76	5	62	29	26	23	19	1.98
49874581--49874655	23	3.3	23	92	3	134	32	26	20	21	1.97
49876124--49876191	34	2.0	34	100	0	136	38	11	8	41	1.73
49879230--49879322	36	2.6	36	84	0	114	19	11	24	44	1.84
49882149--49882177	13	2.2	13	100	0	58	6	13	41	37	1.72
49909198--49909356	43	3.7	42	77	5	142	27	20	23	28	1.99
49909108--49909391	44	6.6	43	72	13	183	29	20	22	28	1.98
49913866--49913966	20	5.3	20	65	13	79	44	17	5	31	1.73
49913849--49913986	20	7.5	18	65	13	75	47	15	5	31	1.67
49913840--49913989	37	4.0	37	96	0	273	46	16	5	32	1.69
49916636--49916705	22	3.2	22	83	0	95	30	27	0	42	1.56
49916707--49916748	22	1.9	22	85	0	57	35	30	0	33	1.58
49916791--49916852	30	2.1	29	82	8	72	33	0	1	64	1.03
49916943--49916976	15	2.3	15	90	5	52	26	0	5	67	1.13
49918780--49918828	24	2.0	24	88	0	71	44	32	18	4	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49919025--49919908	97	8.9	98	80	12	975	47	23	0	28	1.54
49919025--49919775	23	30.9	23	81	13	810	48	22	0	28	1.52
49919008--49919930	51	18.2	57	73	20	490	47	23	0	28	1.55
49923568--49923620	28	2.0	27	82	14	65	39	13	9	37	1.77
49924530--49924752	115	1.9	115	85	1	304	23	22	18	35	1.96
49924840--49924951	44	2.5	44	78	2	100	32	25	16	25	1.97
49925076--49925828	89	8.5	89	84	2	598	22	20	25	30	1.98
49925126--49925828	221	3.2	222	81	3	720	22	20	25	30	1.98
49925095--49925828	310	2.4	311	85	1	1006	23	20	25	30	1.99
49925077--49925872	399	2.0	399	89	0	1216	22	20	25	30	1.98
49925184--49925886	89	7.9	89	85	2	672	22	20	25	30	1.99
49927126--49927238	8	15.7	7	76	18	76	4	14	0	81	0.84
49927128--49927230	11	9.2	11	80	13	86	3	14	0	81	0.83
49927126--49927227	6	17.7	6	76	15	92	3	13	0	82	0.81
49927154--49927241	23	3.9	22	76	14	81	5	10	0	84	0.78
49927132--49927241	34	3.1	35	82	8	125	4	13	0	81	0.83
49927154--49927241	1	88.0	1	67	0	50	5	10	0	84	0.78
49928617--49928756	72	1.9	71	81	5	165	36	13	18	31	1.90
49929107--49929145	20	2.0	21	85	10	55	66	0	15	17	1.25
49931353--49931378	3	8.7	3	100	0	52	0	0	30	69	0.89
49931707--49931756	3	17.0	3	81	4	57	36	4	2	58	1.29
49931707--49931757	18	2.9	17	88	8	75	35	5	1	56	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49932082--49932215	71	1.9	71	93	0	232	29	17	19	33	1.94
49933758--49933789	14	2.1	16	88	11	50	25	18	12	43	1.85
49936054--49936101	9	5.4	9	80	9	55	77	0	22	0	0.78
49936040--49936116	23	3.2	24	82	8	95	79	0	20	0	0.74
49936074--49936117	6	7.7	6	87	7	56	81	0	18	0	0.68
49936040--49936110	17	4.5	17	75	20	66	77	0	22	0	0.77
49936040--49936117	32	2.6	29	77	22	88	79	0	20	0	0.73
49937370--49938652	132	9.8	131	82	8	889	30	17	24	28	1.97
49937641--49937793	44	3.5	39	98	0	162	26	16	28	28	1.97
49937377--49938057	352	1.9	352	93	0	1175	29	17	24	28	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204