genome.fa.s26.2.7.7.80.10.50.1000.46.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Length:  60343961

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  46  of  204  ( 24404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13471597--13471784	95	2.0	95	87	2	270	52	10	9	27	1.66
13473232--13473269	15	2.4	17	86	8	53	28	0	2	68	1.03
13476097--13476367	43	6.3	43	86	1	330	22	16	31	29	1.96
13476097--13476367	129	2.1	129	86	1	364	22	16	31	29	1.96
13483143--13483219	33	2.3	33	84	2	91	14	9	35	41	1.77
13488338--13488377	20	2.0	20	90	0	62	25	12	12	50	1.75
13489361--13489417	28	2.0	28	93	0	96	47	17	12	22	1.81
13493030--13493073	21	2.1	21	83	8	54	65	6	2	25	1.28
13497085--13497127	20	2.2	20	100	0	86	23	16	13	46	1.83
13498027--13498349	27	12.3	27	77	13	172	22	16	17	43	1.88
13498027--13498349	54	6.2	53	78	11	344	22	16	17	43	1.88
13498106--13498349	81	3.0	81	88	0	371	21	16	18	43	1.88
13499236--13499294	23	2.9	20	76	18	59	62	6	27	3	1.36
13499262--13499301	18	2.2	19	86	8	57	70	2	25	2	1.13
13504662--13504697	17	2.1	17	89	0	54	13	27	11	47	1.77
13505003--13505041	20	2.0	20	94	0	69	28	15	10	46	1.78
13505733--13505810	32	2.4	32	89	0	129	32	14	16	37	1.89
13505889--13506058	27	6.3	27	82	5	200	24	16	14	44	1.85
13505889--13506058	81	2.1	81	87	2	243	24	16	14	44	1.85
13507733--13507798	31	2.2	29	89	5	96	46	30	3	19	1.65
13514341--13514399	24	2.5	24	88	0	91	18	32	16	32	1.94
13514320--13514408	24	3.7	25	75	13	87	16	30	19	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13516925--13516952	9	3.1	9	100	0	56	64	10	10	14	1.50
13529067--13529114	13	3.8	12	86	8	60	43	14	0	41	1.45
13532499--13532559	28	2.2	28	85	5	81	45	0	3	50	1.17
13532734--13532775	15	2.7	16	82	14	52	45	0	2	52	1.13
13532725--13532766	15	2.9	15	82	10	52	47	0	0	52	1.00
13532709--13533025	157	2.0	157	96	0	589	47	4	3	44	1.40
13532878--13532912	18	2.0	17	88	5	52	45	0	0	54	0.99
13532710--13532948	75	3.1	75	64	18	191	46	3	3	46	1.35
13537940--13538055	9	12.7	9	69	13	67	47	0	4	48	1.21
13537951--13538041	35	2.5	36	89	3	139	48	0	5	46	1.25
13546054--13546083	12	2.5	12	94	0	51	46	0	6	46	1.29
13546427--13546511	3	28.3	3	73	17	63	65	1	3	29	1.16
13546427--13546511	11	7.4	11	71	19	66	65	1	3	29	1.16
13546427--13546508	24	3.4	23	74	14	76	65	1	3	29	1.17
13546427--13546511	35	2.3	36	78	8	91	65	1	3	29	1.16
13546843--13546884	21	2.0	21	95	0	75	69	26	0	4	1.08
13546842--13546891	24	2.1	23	85	3	64	68	26	0	6	1.13
13546845--13546914	21	3.2	22	83	4	70	60	28	1	10	1.38
13547381--13547532	40	3.8	40	79	3	187	26	19	21	31	1.98
13547365--13547533	40	4.1	42	75	6	157	26	17	21	34	1.96
13547365--13547533	82	2.0	83	88	1	250	26	17	21	34	1.96
13547700--13547883	46	4.0	46	64	13	110	28	22	21	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13547695--13547999	136	2.3	135	92	1	504	29	21	21	27	1.99
13547995--13548649	132	5.0	132	95	0	1166	30	25	16	27	1.97
13561202--13561284	3	28.3	3	73	20	54	66	1	3	28	1.16
13561200--13561281	12	6.5	12	73	17	60	65	1	3	29	1.17
13561616--13561657	21	2.0	21	95	0	75	69	26	0	4	1.08
13561615--13561664	24	2.1	23	85	3	64	68	26	0	6	1.13
13561618--13561687	21	3.2	22	83	4	70	60	28	1	10	1.38
13571371--13571399	14	2.1	14	100	0	58	27	6	13	51	1.66
13578752--13578791	22	2.0	22	85	14	59	70	7	5	17	1.30
13582883--13583015	25	5.6	25	67	13	91	45	25	15	12	1.82
13582875--13583015	47	3.0	47	89	0	210	46	24	15	13	1.82
13582908--13582990	22	3.6	22	71	15	78	40	27	18	13	1.87
13588819--13588900	26	3.0	25	79	12	83	39	0	2	58	1.11
13588817--13588902	29	3.0	29	80	15	97	39	0	2	58	1.11
13588997--13589063	26	2.6	25	76	9	73	19	8	1	70	1.22
13589006--13589052	24	1.9	25	86	4	69	17	6	2	74	1.12
13594199--13594265	23	2.9	24	82	4	84	37	22	19	20	1.95
13615603--13615684	41	2.0	41	90	0	128	28	10	14	46	1.78
13615739--13615784	17	2.4	20	75	24	62	56	8	2	32	1.42
13615743--13615782	17	2.3	18	95	4	73	52	10	2	35	1.48
13628344--13628380	18	2.1	18	89	0	56	43	2	0	54	1.14
13632109--13632313	27	7.6	27	86	3	259	30	27	15	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13639775--13639979	27	7.6	27	86	3	259	30	27	15	26	1.96
13646420--13646569	40	3.8	39	91	4	228	34	3	0	62	1.12
13646470--13646536	11	6.4	11	72	20	54	35	2	0	61	1.12
13646521--13646575	27	2.0	28	89	3	85	32	3	0	63	1.12
13655854--13655920	21	3.5	21	63	23	56	34	16	22	26	1.95
13655851--13655924	36	2.1	36	100	0	148	37	16	21	24	1.93
13656208--13656419	105	2.0	105	94	0	370	35	21	20	22	1.96
13662379--13662434	22	2.5	22	82	5	69	62	3	17	16	1.46
13662380--13662446	22	3.0	22	72	12	57	62	4	16	16	1.48
13668292--13668458	21	7.7	20	70	16	64	56	12	9	21	1.64
13668292--13668365	21	3.4	21	77	17	78	50	13	13	22	1.77
13668274--13668464	45	4.3	44	78	5	181	58	12	8	20	1.60
13668292--13668464	90	1.9	88	81	4	204	56	13	9	20	1.64
13672111--13672148	19	2.1	19	95	5	69	2	5	5	86	0.76
13672094--13672148	18	3.1	17	84	10	65	1	10	5	81	0.92
13672208--13672237	2	15.0	2	92	0	51	0	46	0	53	1.00
13676127--13676358	27	8.6	27	87	2	313	26	15	27	30	1.96
13691870--13692022	61	2.5	61	98	0	297	32	9	13	44	1.76
13692607--13692637	16	1.9	16	93	0	53	54	12	6	25	1.62
13695794--13696026	47	5.1	47	70	17	184	44	2	4	48	1.36
13695775--13696073	91	3.3	91	95	0	508	45	3	4	46	1.38
13696090--13696124	18	2.0	17	88	5	52	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13696089--13696506	120	3.5	120	97	0	791	43	1	5	49	1.37
13696162--13696469	61	5.1	61	67	17	248	42	1	7	48	1.41
13696223--13696268	16	2.9	16	78	12	51	45	0	2	52	1.13
13696463--13696504	15	2.7	16	82	14	52	45	0	2	52	1.13
13696454--13696495	15	2.9	15	82	10	52	47	0	0	52	1.00
13696718--13696750	16	2.1	16	100	0	66	21	36	6	36	1.78
13705129--13705352	113	2.0	112	95	1	405	39	15	15	29	1.88
13706012--13706173	81	2.0	81	98	0	315	29	19	10	40	1.85
13721352--13721406	24	2.3	23	82	11	67	74	3	3	18	1.11
13722912--13723043	67	2.0	67	92	0	219	27	31	18	22	1.98
13723198--13723313	57	2.0	59	88	10	175	22	23	23	31	1.99
13724261--13724513	46	5.6	46	94	3	435	28	22	16	33	1.95
13724261--13724513	91	2.8	91	95	3	449	28	22	16	33	1.95
13732996--13733034	15	2.5	15	83	4	51	43	0	10	46	1.37
13733139--13733203	3	21.7	3	85	6	87	66	1	3	29	1.16
13733087--13733199	39	2.8	42	77	13	119	62	3	5	28	1.33
13734804--13734979	44	4.0	44	87	2	228	26	24	17	31	1.97
13744515--13744552	20	1.9	19	85	15	51	26	26	5	42	1.76
13748046--13748117	3	23.7	3	78	13	76	68	1	2	27	1.12
13752482--13752561	29	2.7	29	80	9	81	50	12	6	31	1.65
13752930--13752991	20	3.0	20	81	13	65	69	1	1	27	1.07
13752945--13752991	21	2.3	20	85	10	60	70	2	0	27	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13753253--13753309	26	2.1	28	81	18	68	49	3	1	45	1.29
13766303--13766327	13	1.9	13	100	0	50	8	0	24	68	1.16
13767965--13768138	41	4.2	42	88	2	212	29	20	26	22	1.99
13767984--13768144	41	3.9	41	92	1	243	29	21	27	22	1.99
13767984--13768179	41	4.8	41	88	1	232	30	20	26	22	1.98
13771163--13771223	31	2.0	31	93	0	104	29	22	6	40	1.79
13779543--13779580	20	1.9	20	89	10	60	28	5	15	50	1.66
13779543--13779583	22	1.9	22	85	14	59	29	4	14	51	1.63
13780410--13780455	23	2.0	23	91	0	74	50	8	21	19	1.75
13783761--13783785	9	2.8	9	100	0	50	24	8	0	68	1.16

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204