genome.fa.s26.2.7.7.80.10.50.1000.94.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Length:  60343961

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  94  of  204  ( 24404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29420703--29421379	116	5.9	115	81	7	695	33	21	16	28	1.95
29420703--29421223	233	2.2	232	86	3	740	34	21	16	27	1.95
29421856--29421917	7	8.6	7	80	7	70	20	0	29	50	1.49
29421855--29421916	15	4.2	15	81	4	81	19	0	29	51	1.47
29421856--29421916	22	2.8	22	84	0	86	19	0	29	50	1.48
29422734--29422769	19	1.9	18	88	5	54	41	0	19	38	1.52
29422816--29422929	48	2.4	47	84	7	149	26	14	21	37	1.92
29427657--29427690	14	2.4	14	90	5	50	14	50	0	35	1.44
29431797--29432104	155	2.0	155	96	0	571	37	22	17	22	1.94
29433672--29433732	27	2.3	27	82	5	79	31	13	27	27	1.94
29441240--29441364	28	4.6	27	80	7	119	47	16	16	20	1.83
29441249--29441353	28	3.8	27	82	6	122	46	17	16	20	1.84
29441554--29441616	22	2.9	22	75	0	63	11	17	20	50	1.76
29446040--29446125	45	1.9	45	92	0	145	19	22	17	40	1.91
29447626--29447789	34	4.7	34	76	6	150	26	25	25	22	2.00
29448278--29448381	50	2.1	50	100	0	208	32	25	3	37	1.74
29450782--29450830	25	2.0	25	100	0	98	32	8	20	38	1.82
29451215--29451332	25	4.8	24	77	8	85	25	22	23	27	2.00
29453424--29453449	13	2.0	13	100	0	52	38	15	23	23	1.92
29460113--29460173	25	2.4	25	83	5	61	27	21	27	22	1.99
29460137--29460268	24	5.4	25	74	12	103	30	19	28	21	1.98
29460126--29460300	25	7.1	25	74	10	121	32	19	27	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29460340--29460399	24	2.4	25	80	2	68	33	21	25	20	1.97
29462026--29462135	50	2.2	50	88	6	170	24	22	25	27	2.00
29462026--29462136	25	4.4	25	86	3	152	24	22	26	27	2.00
29465563--29465603	19	2.2	19	100	0	82	36	14	0	48	1.44
29468821--29468866	22	2.1	22	84	8	58	65	6	4	23	1.35
29469208--29469247	21	1.9	21	84	0	53	40	5	0	55	1.22
29470252--29470286	17	2.0	18	88	5	54	34	8	0	57	1.29
29476383--29476453	29	2.4	29	88	0	106	30	19	5	43	1.74
29476764--29476821	29	2.0	28	90	3	89	37	18	6	36	1.78
29478505--29478536	6	5.5	6	96	3	57	0	12	0	87	0.54
29482850--29482896	24	2.0	23	84	16	60	31	2	2	63	1.18
29484398--29484441	18	2.4	18	88	0	61	20	22	11	45	1.83
29484833--29484953	62	2.0	60	82	6	145	39	3	7	49	1.47
29488055--29488279	114	2.0	115	90	0	353	28	18	16	35	1.93
29488423--29488508	35	2.6	32	83	7	109	41	20	0	37	1.53
29488552--29488585	17	2.1	17	94	5	61	50	38	0	11	1.39
29489772--29489810	18	2.2	18	90	0	60	51	0	2	46	1.14
29490006--29490072	27	2.7	24	78	17	73	49	1	1	47	1.19
29490094--29490158	20	3.2	21	77	12	66	53	0	1	44	1.09
29490818--29490850	13	2.3	15	90	10	52	63	0	33	3	1.10
29490892--29490929	18	2.1	18	90	9	60	60	0	39	0	0.97
29491786--29491861	38	2.1	37	92	5	127	35	2	13	48	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29499800--29499877	27	2.9	27	73	3	77	26	34	17	20	1.95
29500778--29500955	69	2.6	67	82	6	216	34	17	10	37	1.84
29502090--29502165	29	2.7	29	91	6	120	42	10	0	47	1.38
29502237--29502303	27	2.5	27	92	0	107	26	29	28	14	1.96
29502345--29502476	4	31.2	4	75	18	85	67	0	32	0	0.91
29502344--29502476	14	9.7	14	74	18	79	66	0	33	0	0.92
29502349--29502429	18	4.6	18	85	13	107	66	0	33	0	0.92
29502345--29502477	38	3.5	38	79	17	150	66	0	33	0	0.92
29502372--29502525	44	3.6	44	79	15	157	66	0	33	0	0.92
29502408--29502508	18	5.1	18	68	21	60	69	0	30	0	0.89
29502342--29502539	18	10.7	18	68	20	54	65	0	34	0	0.93
29508806--29508836	12	2.6	12	94	0	53	61	19	0	19	1.35
29508834--29508891	26	2.4	23	76	17	64	50	10	1	37	1.47
29508842--29508894	26	2.0	26	85	7	72	49	7	1	41	1.42
29509074--29509108	3	11.7	3	100	0	70	68	31	0	0	0.90
29509178--29509216	20	2.0	21	85	10	55	66	10	0	23	1.22
29509457--29509526	27	2.6	28	88	4	108	51	1	7	40	1.38
29520139--29520204	25	2.7	25	80	15	68	53	0	37	9	1.33
29521407--29521440	2	17.0	2	93	0	59	50	47	2	0	1.16
29523652--29523704	16	3.2	16	91	2	79	20	7	3	67	1.31
29530525--29530639	35	3.3	35	67	16	101	24	26	22	26	2.00
29530550--29530674	36	3.5	36	72	10	121	25	22	22	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29530490--29530674	71	2.6	71	87	0	262	25	23	22	28	1.99
29535911--29535935	13	1.9	13	100	0	50	72	0	4	24	1.02
29537855--29537928	29	2.6	29	82	2	96	32	8	1	58	1.36
29540056--29540102	20	2.3	20	81	3	58	53	6	25	14	1.65
29542190--29542242	14	3.8	13	79	16	54	79	0	16	3	0.88
29544192--29544222	4	7.8	4	100	0	62	77	0	0	22	0.77
29544490--29545049	264	2.1	264	92	0	931	29	19	22	28	1.98
29544582--29544967	87	4.4	86	70	12	264	31	18	21	29	1.97
29544754--29545419	218	3.1	218	87	1	901	29	19	22	28	1.98
29544413--29545221	44	18.6	43	72	9	309	30	18	22	29	1.97
29545620--29545816	44	4.5	44	69	11	145	31	22	22	22	1.98
29545530--29545912	129	3.0	129	90	0	579	30	21	22	25	1.99
29547844--29547938	29	3.2	28	77	8	91	32	7	2	57	1.38
29552297--29552356	28	2.1	28	93	0	102	30	10	31	28	1.89
29559975--29560017	17	2.4	17	84	7	50	69	6	2	20	1.23
29560309--29560361	19	2.8	19	78	16	56	39	16	1	41	1.60
29561219--29561279	23	2.5	26	82	15	76	32	21	21	24	1.98
29575467--29575500	13	2.5	14	85	9	52	52	17	14	14	1.74
29582947--29583011	18	3.3	18	73	19	67	40	43	1	15	1.56
29582930--29583011	41	2.0	41	95	0	146	37	40	3	18	1.68
29582931--29582998	21	3.3	21	69	19	61	36	39	2	20	1.68
29583834--29583906	12	6.5	12	73	19	52	68	2	19	9	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29583835--29583902	21	3.1	21	74	18	59	67	2	19	10	1.33
29591068--29591687	47	12.9	49	95	2	1052	32	8	29	29	1.86
29591068--29591687	96	6.5	97	94	3	1046	32	8	29	29	1.86
29595288--29595351	21	3.0	21	93	0	101	17	21	18	42	1.89
29597411--29597528	29	4.1	28	77	10	98	41	1	1	55	1.20
29597488--29597520	17	1.9	17	100	0	66	42	0	3	54	1.15
29598303--29598345	20	2.1	21	86	4	61	37	2	0	60	1.10
29610021--29610078	29	2.0	29	83	6	73	27	17	6	48	1.72
29610215--29610248	17	1.9	17	88	5	50	58	5	0	35	1.22
29610321--29610371	25	2.1	24	81	3	57	50	1	1	45	1.24
29618746--29618797	3	17.7	3	96	4	97	65	0	0	34	0.93
29619692--29619747	27	2.0	28	86	10	80	58	1	0	39	1.08
29621067--29621101	7	5.1	7	86	6	54	71	0	0	28	0.86
29621067--29621101	13	2.6	14	86	9	54	71	0	0	28	0.86
29622222--29622288	17	3.6	19	74	20	61	59	0	1	38	1.06
29622220--29622261	20	2.0	20	86	9	57	59	0	0	40	0.97
29630310--29630359	11	4.5	11	77	5	55	4	4	30	62	1.32
29630319--29630370	23	2.3	22	87	6	77	5	7	25	61	1.45
29632722--29632801	27	3.0	27	88	0	124	37	11	25	26	1.89
29636390--29636440	25	2.0	26	81	11	61	49	0	3	47	1.20
29637620--29637713	48	2.0	48	83	8	120	39	26	13	20	1.90
29640136--29640229	48	2.0	48	85	8	129	39	27	13	19	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29643249--29643282	17	1.9	18	94	5	61	32	38	29	0	1.58
29657146--29657258	44	2.6	44	85	0	154	28	23	20	28	1.99
29666344--29666456	55	2.1	55	98	0	217	19	25	14	40	1.89
29673407--29673457	17	3.1	17	78	13	61	47	13	11	27	1.78
29673995--29674045	19	2.7	19	77	16	61	45	3	11	39	1.59
29680727--29680780	27	2.0	28	85	3	74	16	3	35	44	1.66
29687215--29687266	24	2.2	24	89	0	77	59	13	13	13	1.61
29687738--29687762	7	3.6	7	100	0	50	12	0	0	88	0.53
29688431--29688455	7	3.6	7	100	0	50	84	0	0	16	0.63
29693325--29693403	24	3.3	25	73	16	69	17	30	16	35	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204