genome.fa.s26.2.7.7.80.10.50.1000.203.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Length:  60343961

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  203  of  204  ( 24404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59809546--59809577	9	3.6	9	95	0	55	28	0	0	71	0.86
59816372--59816419	23	2.1	22	84	3	60	27	4	2	66	1.21
59824208--59824234	2	13.5	2	100	0	54	51	0	0	48	1.00
59837338--59837404	22	3.0	22	76	8	64	41	19	22	16	1.90
59837385--59837466	25	3.3	25	84	0	110	40	18	20	20	1.92
59838480--59838528	23	2.1	23	96	0	89	44	8	4	42	1.53
59838900--59838956	15	3.5	15	69	17	51	49	0	1	49	1.11
59838995--59839025	16	2.0	16	93	6	55	38	0	0	61	0.96
59839695--59839752	26	2.3	25	93	3	98	34	10	17	37	1.84
59846002--59846044	23	1.9	22	81	13	52	39	0	0	60	0.97
59847367--59847401	10	3.6	10	84	7	54	31	0	0	68	0.90
59853163--59853222	31	1.9	31	82	0	75	36	6	10	46	1.64
59853996--59854087	35	2.7	34	72	12	89	63	1	1	34	1.09
59855536--59855574	20	1.9	21	89	5	62	38	0	0	61	0.96
59863302--59863491	105	1.8	105	83	2	256	28	21	23	26	1.99
59878048--59878094	21	2.3	21	81	3	60	40	0	0	59	0.97
59881635--59881688	24	2.2	25	80	3	65	20	5	5	68	1.30
59885996--59886029	18	1.9	18	94	5	61	14	5	5	73	1.21
59886709--59886752	19	2.5	19	85	10	58	27	9	4	59	1.48
59887165--59887207	19	2.3	19	79	0	50	44	0	0	55	0.99
59887845--59887869	12	2.1	12	100	0	50	28	8	8	56	1.57
59888108--59888195	43	2.0	43	100	0	176	38	15	9	36	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59897819--59897860	20	2.1	20	86	8	59	11	9	7	71	1.31
59897819--59897861	19	2.3	19	84	8	52	13	9	6	69	1.35
59898239--59898308	32	2.2	32	92	0	113	37	10	18	34	1.84
59903464--59903686	115	2.0	111	85	5	304	30	9	16	43	1.80
59904629--59905277	207	3.1	209	80	11	671	28	19	16	34	1.94
59908588--59908613	3	8.7	3	100	0	52	0	30	0	69	0.89
59917097--59917198	39	2.6	39	87	0	150	34	12	13	39	1.83
59918400--59918459	31	1.9	31	86	6	86	50	6	21	21	1.72
59919431--59919460	2	15.0	2	100	0	60	50	0	0	50	1.00
59919460--59919491	2	16.0	2	100	0	64	50	0	50	0	1.00
59921177--59921212	3	12.3	3	94	5	65	69	30	0	0	0.89
59924664--59924706	21	2.0	22	86	9	61	30	0	4	65	1.13
59926837--59926891	22	2.5	22	78	21	62	49	3	0	47	1.19
59930066--59930114	25	2.0	24	84	11	64	59	0	4	36	1.17
59930769--59930819	14	3.0	18	70	24	56	47	5	5	41	1.52
59933670--59933697	14	2.0	14	100	0	56	57	7	7	28	1.52
59934018--59934055	18	2.0	19	90	10	60	52	0	0	47	1.00
59936137--59936200	21	3.1	21	80	12	80	57	0	1	40	1.08
59936137--59936199	28	2.1	31	80	13	71	58	0	1	39	1.07
59938793--59938834	3	14.0	3	100	0	84	33	0	0	66	0.92
59944335--59944407	21	3.5	20	77	18	69	61	1	6	30	1.30
59944350--59944392	15	2.9	15	78	21	54	65	0	4	30	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59946373--59946719	46	7.6	45	83	12	374	28	22	14	34	1.94
59946462--59946580	36	3.0	36	75	21	130	29	21	13	36	1.91
59946416--59946580	82	2.0	82	95	0	294	29	21	13	35	1.92
59946544--59946705	52	3.1	51	92	2	252	27	24	13	34	1.93
59951654--59951763	3	36.7	3	74	17	86	63	3	3	29	1.28
59953309--59953802	44	11.6	43	68	13	209	29	21	18	30	1.97
59953263--59953460	85	2.3	85	92	0	324	30	22	18	28	1.97
59953353--59953636	129	2.2	129	99	0	559	29	21	19	29	1.98
59953493--59953803	167	1.9	167	95	0	559	29	20	19	30	1.97
59966489--59966597	3	36.7	3	73	15	84	63	3	3	29	1.29
59968043--59968431	30	12.3	31	79	15	397	11	11	51	24	1.72
59968069--59968459	66	6.2	64	83	9	441	12	11	51	24	1.71
59968419--59968510	27	3.5	27	92	4	145	13	8	51	27	1.70
59968106--59968516	30	13.6	30	82	10	398	11	10	52	25	1.70
59969410--59969452	20	2.1	22	83	12	56	48	0	16	34	1.46
59970933--59970974	3	14.0	3	100	0	84	33	0	0	66	0.92
59972717--59972757	5	8.2	5	80	20	50	21	0	0	78	0.76
59972730--59972756	9	3.0	9	100	0	54	22	0	0	77	0.76
59973861--59974171	169	1.8	169	90	1	507	23	16	18	41	1.90
59974000--59974603	188	3.1	187	82	11	757	22	17	16	43	1.87
59979631--59979668	4	9.5	4	100	0	76	50	23	0	26	1.50
59980779--59980813	14	2.6	13	90	4	52	54	5	0	40	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59995809--59995856	25	2.0	25	87	4	71	35	14	22	27	1.93
59995892--59996014	64	1.9	63	86	6	176	34	23	20	21	1.96
60000133--60000417	36	7.9	36	79	4	306	28	44	4	22	1.71
60000133--60000408	72	3.8	72	88	1	376	28	44	3	22	1.71
60000132--60000402	108	2.5	107	83	2	337	28	45	4	22	1.70
60000413--60000550	45	3.1	45	92	0	222	28	47	10	13	1.75
60001673--60001715	21	2.0	21	82	8	52	23	9	6	60	1.51
60002103--60002128	3	8.7	3	100	0	52	69	0	30	0	0.89
60012325--60012498	32	5.2	33	83	8	208	42	17	22	17	1.89
60012328--60012498	67	2.6	67	92	0	270	42	17	22	18	1.89
60012437--60012493	18	3.2	18	69	14	55	40	19	21	19	1.92
60015580--60016696	370	3.0	370	98	0	2175	36	12	14	36	1.84
60016686--60016846	32	4.8	33	84	7	200	18	23	18	40	1.91
60016686--60016856	67	2.6	67	93	0	279	18	22	17	42	1.89
60019654--60019697	20	2.1	22	84	16	58	13	9	9	68	1.40
60026395--60026605	105	2.0	105	100	0	422	25	28	18	26	1.98
60027693--60027737	22	2.0	22	100	0	90	8	22	13	55	1.65
60030561--60031249	231	3.0	230	82	6	825	17	26	11	44	1.83
60039057--60039103	17	2.6	17	83	6	58	51	4	6	38	1.47
60047186--60047216	15	2.1	15	93	0	53	90	0	9	0	0.46
60056793--60056839	22	2.1	22	81	14	53	25	6	4	63	1.36
60063587--60063826	125	1.9	125	88	3	358	34	16	15	33	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60073835--60073873	21	1.9	20	89	5	60	20	0	35	43	1.52
60076532--60076568	13	2.9	13	88	4	58	54	2	8	35	1.44
60077145--60077234	9	10.0	9	73	13	69	54	6	4	34	1.47
60077145--60077530	27	14.0	27	85	6	370	48	11	2	36	1.53
60077187--60077519	117	2.8	117	95	0	585	48	12	2	36	1.54
60077563--60077616	7	7.1	7	87	8	63	53	16	1	27	1.53
60082714--60082801	39	2.2	40	84	9	110	36	7	18	37	1.80
60082976--60083058	39	2.2	39	84	6	107	20	20	20	38	1.94
60082976--60083151	45	4.2	40	79	15	164	20	19	20	39	1.92
60083003--60083153	45	3.3	45	88	0	221	20	18	19	41	1.91
60085825--60085873	21	2.3	21	89	0	71	38	20	38	2	1.64
60085838--60085897	12	5.2	12	76	11	63	43	20	35	1	1.62
60086315--60086708	42	9.4	42	81	8	387	24	20	21	34	1.97
60086315--60086708	85	4.7	84	78	11	378	24	20	21	34	1.97
60086381--60086708	125	2.6	121	82	9	381	22	19	22	35	1.96
60086759--60086801	22	2.0	22	90	0	68	48	27	13	9	1.73
60125908--60126007	30	3.2	31	80	14	107	40	6	5	49	1.49
60144653--60144683	3	10.3	3	100	0	62	32	0	0	67	0.91
60146771--60146796	11	2.4	11	100	0	52	50	7	7	34	1.60
60159454--60159489	7	5.1	7	100	0	72	58	0	13	27	1.36
60159743--60159771	13	2.1	14	93	6	51	68	3	0	27	1.05
60165810--60165889	39	2.0	40	95	2	144	21	5	23	50	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60166464--60166514	25	2.0	25	84	7	66	33	3	1	60	1.26
60176610--60176669	30	2.0	30	96	0	111	28	21	16	33	1.95
60179866--60179920	24	2.5	22	80	14	69	67	0	0	32	0.91
60199212--60199252	21	2.0	21	90	0	64	29	21	29	19	1.98
60213334--60213384	26	1.9	27	96	4	95	27	31	25	15	1.96
60213198--60213562	102	3.6	102	87	4	504	31	29	20	18	1.96
60213436--60213485	26	1.9	26	95	0	91	30	34	22	14	1.93
60213896--60213953	30	1.9	30	82	0	71	31	22	6	39	1.80
60216774--60216912	42	3.5	40	75	16	146	30	28	19	20	1.97
60216772--60216947	76	2.3	76	92	1	282	31	28	20	19	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204