genome.fa.s26.2.7.7.80.10.50.1000.101.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Length:  60343961

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  101  of  204  ( 24404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31408475--31408527	26	2.0	26	96	0	97	18	18	33	28	1.95
31408504--31408649	42	3.5	42	77	6	143	23	17	24	34	1.95
31410987--31411052	32	2.1	32	97	0	123	40	18	31	9	1.81
31411787--31411846	30	2.0	30	90	0	93	35	8	8	48	1.63
31411908--31411949	16	2.7	15	85	7	57	45	2	0	52	1.13
31412516--31412568	25	2.1	25	82	6	63	37	1	1	58	1.20
31417299--31417383	42	2.0	42	97	0	161	27	16	15	41	1.88
31421109--31421179	35	2.0	35	100	0	142	43	22	11	22	1.85
31424800--31425027	29	7.9	29	70	10	144	21	25	14	38	1.91
31424958--31425042	29	2.9	29	80	1	71	21	25	14	38	1.91
31428061--31428098	20	1.9	20	94	0	67	42	10	7	39	1.69
31438121--31438196	38	2.0	38	100	0	152	26	2	36	34	1.71
31439787--31439864	28	2.8	28	96	0	147	37	24	15	23	1.93
31440228--31440341	27	4.2	27	73	8	106	21	15	21	40	1.91
31454856--31455045	27	7.1	27	84	3	222	41	22	18	17	1.90
31455137--31455218	26	3.2	26	83	0	101	24	20	20	34	1.97
31467325--31467375	5	10.2	5	81	12	52	80	5	0	13	0.89
31467406--31467454	6	8.7	6	79	16	52	67	4	0	28	1.09
31467951--31467985	15	2.3	15	85	0	52	82	0	2	14	0.77
31474739--31475055	158	2.0	158	97	0	598	32	6	21	38	1.80
31485291--31485315	5	5.0	5	100	0	50	60	0	0	40	0.97
31505320--31505368	24	2.0	24	100	0	98	12	24	12	51	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31509064--31509100	17	2.1	19	85	14	53	35	10	8	45	1.69
31509071--31509115	18	2.5	19	86	10	60	37	11	6	44	1.66
31513293--31513324	17	1.9	16	93	6	55	15	12	40	31	1.85
31523922--31524063	66	2.2	66	92	0	239	29	19	21	30	1.97
31523922--31524087	33	5.0	33	85	1	217	27	19	21	31	1.97
31531585--31531640	27	2.2	25	84	12	69	26	19	28	25	1.99
31537496--31537547	27	1.9	27	88	0	77	21	23	28	26	1.99
31537560--31537664	43	2.5	42	88	1	147	22	16	27	33	1.95
31544922--31545124	102	2.0	102	92	1	336	21	18	28	31	1.97
31545103--31545236	33	3.7	34	72	18	119	19	20	28	31	1.97
31545024--31545235	76	2.8	75	91	0	334	21	19	28	30	1.98
31547364--31547428	30	2.3	27	86	7	85	53	0	3	43	1.16
31548929--31548988	23	2.7	23	94	2	104	20	21	21	36	1.95
31549155--31549198	12	3.6	12	90	3	70	36	0	25	38	1.56
31555572--31555613	10	4.3	10	80	17	52	73	0	9	16	1.08
31556639--31556705	23	3.0	23	91	2	100	22	23	20	32	1.98
31556872--31556927	12	4.6	12	88	2	85	37	0	25	37	1.56
31562484--31562514	9	3.4	9	90	0	53	25	12	22	38	1.90
31562568--31562604	18	2.1	18	94	0	65	45	8	10	35	1.69
31571315--31571436	28	4.4	28	91	0	190	32	24	19	22	1.97
31572671--31572756	28	3.1	27	90	5	127	33	25	19	20	1.97
31572684--31572773	28	3.2	28	93	0	144	30	24	21	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31580231--31580329	25	4.0	25	74	9	67	33	19	22	25	1.97
31587643--31587675	16	2.0	17	88	5	50	36	18	3	42	1.66
31587849--31587915	24	2.7	24	81	4	71	25	22	19	32	1.97
31601087--31601273	95	2.1	92	88	8	276	50	11	5	32	1.63
31602832--31602926	37	2.5	38	82	3	111	36	40	12	10	1.78
31624435--31624691	128	2.0	128	95	0	460	29	19	25	25	1.99
31624440--31624762	128	2.5	127	85	5	373	29	19	25	25	1.98
31624563--31625040	172	2.8	172	93	0	821	31	20	23	24	1.98
31624438--31625263	44	19.1	44	66	13	243	31	19	23	25	1.98
31624641--31624905	87	3.1	87	63	12	202	32	20	23	23	1.98
31624911--31625269	131	2.7	131	88	0	522	31	18	22	26	1.98
31628403--31628451	20	2.5	19	83	6	62	36	4	2	57	1.30
31628414--31628451	19	1.9	19	89	5	58	39	5	2	52	1.38
31637499--31637598	33	3.0	33	84	5	139	30	19	21	30	1.97
31639491--31639525	19	1.9	19	88	11	56	34	5	2	57	1.37
31639706--31639872	90	1.9	89	80	6	194	32	15	10	40	1.82
31639863--31640342	79	6.1	79	83	3	495	33	15	12	38	1.86
31639863--31640330	158	3.0	159	82	4	556	32	16	12	38	1.86
31640282--31640481	86	2.3	87	80	2	233	33	11	12	42	1.79
31640395--31640556	74	2.2	76	84	8	208	33	8	12	45	1.72
31645564--31645899	51	6.7	50	76	8	279	28	15	26	29	1.96
31645564--31645847	102	2.8	102	86	5	373	27	15	27	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31652075--31652417	51	6.8	51	75	10	294	27	15	26	29	1.96
31652075--31652416	102	3.4	101	80	8	376	27	15	26	29	1.96
31657467--31657534	27	2.4	27	80	4	82	51	17	4	26	1.64
31658370--31658423	28	1.9	28	92	0	90	29	20	24	25	1.99
31658703--31658780	32	2.5	32	85	2	104	38	19	20	21	1.94
31658785--31658834	26	1.9	26	91	0	82	40	24	20	16	1.91
31658922--31659056	24	5.6	24	80	1	126	46	24	4	24	1.71
31659074--31659136	27	2.3	27	86	0	90	25	19	14	41	1.89
31659075--31659380	54	5.7	54	74	8	210	28	19	17	33	1.95
31659129--31659216	27	3.3	27	79	3	97	36	14	17	31	1.90
31659209--31659380	27	6.4	27	80	1	175	25	22	18	34	1.96
31659232--31659380	81	1.8	81	88	0	226	25	22	18	34	1.96
31660639--31660687	25	2.0	25	95	0	89	44	28	10	16	1.80
31662667--31662978	43	7.4	41	73	8	223	23	15	24	36	1.93
31662664--31662986	85	3.8	85	89	0	468	23	16	24	35	1.94
31665725--31666022	27	11.1	27	81	0	319	19	18	20	41	1.90
31665725--31666015	81	3.6	81	85	1	352	19	18	20	41	1.90
31666195--31666234	20	2.0	21	90	5	64	22	35	22	20	1.96
31674681--31674729	18	2.8	17	81	9	62	20	0	2	77	0.87
31674688--31674727	10	4.1	10	83	6	55	17	0	2	80	0.83
31674804--31674844	17	2.5	17	88	11	59	2	12	4	80	0.97
31674865--31674924	13	4.6	13	75	8	50	20	0	3	76	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31674875--31674924	19	2.6	19	81	12	66	20	0	2	78	0.86
31676588--31676617	10	3.1	10	95	4	53	63	10	0	26	1.26
31677087--31677130	23	2.0	22	86	4	61	75	0	18	6	1.02
31683482--31683520	19	2.1	19	100	0	78	38	5	15	41	1.69
31688060--31688092	12	2.8	12	90	9	50	45	9	9	36	1.68
31690388--31690724	43	7.8	43	86	0	449	31	30	18	18	1.95
31690388--31690724	129	2.6	128	89	2	496	31	30	18	18	1.95
31690686--31690797	41	2.6	42	78	12	122	33	26	12	26	1.92
31694153--31694202	21	2.4	21	83	6	66	26	0	50	24	1.50
31694346--31694613	114	2.4	110	89	4	398	27	12	14	45	1.81
31694517--31694679	76	2.1	78	90	4	260	30	11	15	42	1.81
31695558--31695582	7	3.6	7	100	0	50	44	56	0	0	0.99
31695566--31695734	89	1.9	89	86	2	241	45	28	1	24	1.61
31696051--31696236	41	4.5	41	88	0	282	31	20	21	26	1.98
31705052--31705162	41	2.7	41	81	2	134	21	27	14	36	1.93
31709658--31710285	40	15.7	40	95	0	1103	22	26	20	30	1.98
31717439--31718067	40	15.7	40	94	0	1078	22	26	20	30	1.98
31720873--31720920	19	2.6	17	81	12	51	41	2	8	47	1.45
31726764--31726795	16	2.0	16	93	0	55	31	18	15	34	1.93
31729993--31730039	23	2.0	23	95	0	85	42	12	14	29	1.83
31731719--31731775	27	2.3	23	71	23	62	22	24	28	24	2.00
31731721--31731804	28	3.0	28	84	8	109	28	22	25	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31732164--31732415	27	9.3	27	76	6	190	22	19	16	41	1.90
31732167--31732415	81	3.1	80	80	3	284	22	19	16	41	1.90
31732166--31732407	54	4.5	53	81	2	268	22	19	16	41	1.90
31739493--31739568	26	3.0	26	80	1	91	38	23	22	15	1.93
31739728--31739789	27	2.2	28	82	5	81	22	22	19	35	1.96
31739744--31740021	54	5.1	54	79	5	283	20	17	19	43	1.89
31739744--31740021	27	10.3	27	76	3	236	20	17	19	43	1.89
31739748--31740021	108	2.5	108	82	2	343	20	17	18	43	1.88
31741959--31741987	12	2.3	13	94	5	51	20	6	6	65	1.40
31748532--31748821	50	5.7	50	83	6	327	26	23	27	22	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204